Wall clock time and date at job start Sat Apr 11 2020 02:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50700 * 109.47053 * 2 1 4 4 N 1.30290 * 126.34707 * 270.15515 * 3 2 1 5 5 N 1.28533 * 110.05059 * 180.31346 * 4 3 2 6 6 C 1.31212 * 109.85840 * 359.72114 * 5 4 3 7 7 N 1.38588 * 126.47094 * 180.02562 * 6 5 4 8 8 C 1.46900 * 111.00051 * 292.90730 * 7 6 5 9 9 C 1.46895 * 110.99922 * 56.85793 * 7 6 5 10 10 H 1.08995 * 109.47536 * 300.00114 * 9 7 6 11 11 C 1.53001 * 109.47228 * 60.00148 * 9 7 6 12 12 C 1.50700 * 109.47252 * 179.97438 * 9 7 6 13 13 H 1.08005 * 120.00098 * 0.02562 * 12 9 7 14 14 C 1.37877 * 120.00457 * 180.02562 * 12 9 7 15 15 N 1.31513 * 120.00145 * 180.02562 * 14 12 9 16 16 Si 1.86802 * 119.99685 * 359.97438 * 14 12 9 17 17 H 1.48504 * 109.46616 * 90.00618 * 16 14 12 18 18 H 1.48499 * 109.47253 * 210.00139 * 16 14 12 19 19 H 1.48502 * 109.47337 * 330.00459 * 16 14 12 20 20 N 1.36445 * 107.05787 * 359.97438 * 6 5 4 21 21 C 1.46498 * 127.14006 * 180.02562 * 20 6 5 22 22 C 1.53000 * 109.47371 * 90.52021 * 21 20 6 23 23 S 1.81404 * 109.47257 * 180.02562 * 22 21 20 24 24 C 1.81400 * 101.92097 * 180.02562 * 23 22 21 25 25 O 1.42104 * 108.57561 * 294.48931 * 23 22 21 26 26 O 1.42096 * 108.57594 * 65.51232 * 23 22 21 27 27 H 1.09008 * 109.47498 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47280 * 299.99426 * 1 2 3 29 29 H 1.08997 * 109.47553 * 59.99825 * 1 2 3 30 30 H 1.09006 * 109.46876 * 240.00027 * 2 1 3 31 31 H 1.09005 * 109.47503 * 120.00518 * 2 1 3 32 32 H 1.08997 * 109.47508 * 66.34613 * 8 7 6 33 33 H 1.08998 * 109.47406 * 186.35107 * 8 7 6 34 34 H 1.09003 * 109.46809 * 306.34793 * 8 7 6 35 35 H 1.09005 * 109.47572 * 179.97438 * 11 9 7 36 36 H 1.08997 * 109.47046 * 300.00024 * 11 9 7 37 37 H 1.09002 * 109.47199 * 59.99776 * 11 9 7 38 38 H 0.97004 * 119.99666 * 179.97438 * 15 14 12 39 39 H 1.09005 * 109.47094 * 330.52066 * 21 20 6 40 40 H 1.09000 * 109.47441 * 210.52579 * 21 20 6 41 41 H 1.09006 * 109.46812 * 60.00496 * 22 21 20 42 42 H 1.09000 * 109.47293 * 300.00648 * 22 21 20 43 43 H 1.08999 * 109.46995 * 59.99984 * 24 23 22 44 44 H 1.08998 * 109.46824 * 180.02562 * 24 23 22 45 45 H 1.09006 * 109.46754 * 300.00123 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.2869 2.1498 -1.0494 5 7 2.7053 3.3104 -0.6888 6 6 2.7345 3.3866 0.6208 7 7 3.1291 4.4811 1.3738 8 6 4.5653 4.7426 1.2100 9 6 2.3354 5.6690 1.0318 10 1 2.4699 5.9042 -0.0239 11 6 0.8565 5.3910 1.3080 12 6 2.7916 6.8360 1.8691 13 1 3.5914 6.7082 2.5835 14 6 2.1879 8.0670 1.7231 15 7 2.5863 9.0855 2.4535 16 14 0.8050 8.2883 0.4869 17 1 -0.4963 8.0053 1.1442 18 1 0.8111 9.6848 -0.0180 19 1 1.0007 7.3507 -0.6479 20 7 2.3019 2.1850 1.1014 21 6 2.1618 1.7927 2.5059 22 6 0.7518 2.1334 2.9924 23 16 0.5785 1.6483 4.7318 24 6 -1.1325 2.1344 5.0877 25 8 0.6742 0.2332 4.8188 26 8 1.4503 2.4521 5.5148 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8932 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 4.7633 5.0542 0.1844 33 1 4.8713 5.5330 1.8954 34 1 5.1272 3.8345 1.4286 35 1 0.2675 6.2726 1.0547 36 1 0.5262 4.5469 0.7027 37 1 0.7219 5.1558 2.3638 38 1 2.1618 9.9516 2.3505 39 1 2.8938 2.3309 3.1082 40 1 2.3302 0.7201 2.6021 41 1 0.0197 1.5952 2.3901 42 1 0.5834 3.2060 2.8961 43 1 -1.8088 1.5956 4.4240 44 1 -1.3707 1.8931 6.1236 45 1 -1.2459 3.2069 4.9293 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001460446708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:32:59 Heat of formation + Delta-G solvation = 3.010186 kcal Electronic energy + Delta-G solvation = -28214.458466 eV Core-core repulsion = 24395.920834 eV Total energy + Delta-G solvation = -3818.537632 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.151 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.08350 -39.04757 -38.04091 -37.19483 -36.90100 -35.13439 -34.40836 -32.46939 -31.88535 -30.36161 -30.09567 -27.57144 -26.31883 -25.58926 -24.95647 -23.54616 -21.44991 -21.18625 -19.88879 -19.00400 -18.45904 -17.80753 -17.26452 -17.20740 -17.03648 -16.70323 -16.55614 -15.95831 -15.65434 -15.32930 -15.17784 -14.88038 -14.50157 -14.29901 -14.11681 -13.93764 -13.91345 -13.78939 -13.32371 -13.16556 -13.13977 -13.05780 -12.90743 -12.79384 -12.69599 -12.53454 -12.44510 -12.20539 -12.07871 -11.97983 -11.80445 -11.58774 -11.57077 -11.28212 -11.15181 -10.79825 -10.02683 -9.67164 -8.33263 -6.37370 -1.04748 0.66131 1.21387 1.22849 1.33032 1.40416 1.75152 1.75724 2.25583 2.58994 2.83883 3.01172 3.04932 3.33237 3.36886 3.43547 3.86675 3.94549 3.98440 4.10890 4.14467 4.28076 4.32503 4.34885 4.40336 4.41509 4.48735 4.54150 4.64706 4.68892 4.73608 4.88790 4.95438 4.98567 5.01404 5.02496 5.16978 5.19800 5.35793 5.43504 5.64247 5.78766 6.13613 6.53651 6.68283 7.26371 7.68907 8.81807 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.010441 B = 0.005323 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2681.084606 B = 5258.904223 C = 6680.477661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.037 4.037 3 C 0.189 3.811 4 N -0.328 5.328 5 N -0.355 5.355 6 C 0.357 3.643 7 N -0.460 5.460 8 C 0.053 3.947 9 C 0.202 3.798 10 H -0.006 1.006 11 C -0.140 4.140 12 C -0.509 4.509 13 H 0.060 0.940 14 C 0.031 3.969 15 N -0.933 5.933 16 Si 0.931 3.069 17 H -0.256 1.256 18 H -0.294 1.294 19 H -0.269 1.269 20 N -0.457 5.457 21 C 0.115 3.885 22 C -0.646 4.646 23 S 2.441 3.559 24 C -0.637 4.637 25 O -0.959 6.959 26 O -0.977 6.977 27 H 0.099 0.901 28 H 0.060 0.940 29 H 0.046 0.954 30 H 0.109 0.891 31 H 0.112 0.888 32 H 0.023 0.977 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.044 0.956 36 H 0.037 0.963 37 H 0.074 0.926 38 H 0.269 0.731 39 H 0.106 0.894 40 H 0.141 0.859 41 H 0.168 0.832 42 H 0.138 0.862 43 H 0.161 0.839 44 H 0.147 0.853 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.032 -21.719 2.962 24.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.076 4.076 3 C -0.079 4.079 4 N -0.167 5.167 5 N -0.197 5.197 6 C -0.001 4.001 7 N -0.185 5.185 8 C -0.095 4.095 9 C 0.095 3.905 10 H 0.012 0.988 11 C -0.197 4.197 12 C -0.547 4.547 13 H 0.078 0.922 14 C -0.168 4.168 15 N -0.573 5.573 16 Si 0.759 3.241 17 H -0.182 1.182 18 H -0.221 1.221 19 H -0.194 1.194 20 N -0.150 5.150 21 C -0.008 4.008 22 C -0.773 4.773 23 S 2.625 3.375 24 C -0.791 4.791 25 O -0.956 6.956 26 O -0.975 6.975 27 H 0.118 0.882 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.127 0.873 31 H 0.131 0.869 32 H 0.042 0.958 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.062 0.938 36 H 0.056 0.944 37 H 0.093 0.907 38 H 0.078 0.922 39 H 0.125 0.875 40 H 0.158 0.842 41 H 0.186 0.814 42 H 0.156 0.844 43 H 0.180 0.820 44 H 0.165 0.835 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -9.326 -21.618 2.603 23.687 hybrid contribution -0.736 1.401 -0.569 1.681 sum -10.062 -20.217 2.033 22.674 Atomic orbital electron populations 1.21846 0.92440 1.04308 1.02120 1.20345 0.97563 0.83241 1.06470 1.25745 1.02062 0.98581 0.81530 1.73909 1.17836 0.99091 1.25900 1.74607 1.20988 1.14124 1.10029 1.22635 1.00806 0.88456 0.88197 1.58919 1.06302 1.02384 1.50945 1.22227 0.84639 1.02011 1.00588 1.19542 0.90575 0.86215 0.94178 0.98835 1.22105 0.96612 0.99139 1.01885 1.21015 1.19718 0.92517 1.21498 0.92155 1.25486 0.98985 0.95472 0.96906 1.69970 1.43719 1.01967 1.41611 0.86135 0.81019 0.76524 0.80461 1.18180 1.22118 1.19369 1.46389 1.49033 1.10897 1.08673 1.21707 0.96136 1.04476 0.78473 1.31012 1.04939 1.14578 1.26723 1.07113 0.79576 0.74560 0.76286 1.30108 1.20519 1.14365 1.14095 1.93568 1.87186 1.29351 1.85531 1.93608 1.65184 1.71694 1.66973 0.88209 0.92103 0.93434 0.87251 0.86942 0.95833 0.89828 0.90778 0.93801 0.94440 0.90748 0.92188 0.87528 0.84159 0.81381 0.84384 0.82049 0.83511 0.83924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.89 71.98 0.71 -1.07 16 2 C -0.04 -0.55 6.31 29.85 0.19 -0.37 16 3 C 0.19 5.12 7.32 137.64 1.01 6.12 16 4 N -0.33 -12.01 12.18 -49.54 -0.60 -12.61 16 5 N -0.35 -15.01 12.07 -58.01 -0.70 -15.71 16 6 C 0.36 13.56 5.05 260.11 1.31 14.87 16 7 N -0.46 -19.09 4.66 -711.02 -3.31 -22.40 16 8 C 0.05 2.10 9.14 127.69 1.17 3.26 16 9 C 0.20 9.60 1.57 44.17 0.07 9.67 16 10 H -0.01 -0.32 7.11 -2.39 -0.02 -0.33 16 11 C -0.14 -5.84 8.22 71.98 0.59 -5.25 16 12 C -0.51 -27.83 8.53 25.60 0.22 -27.61 16 13 H 0.06 3.58 6.64 -2.91 -0.02 3.56 16 14 C 0.03 1.73 5.45 84.65 0.46 2.19 16 15 N -0.93 -55.90 13.96 21.45 0.30 -55.61 16 16 Si 0.93 44.34 24.37 68.60 1.67 46.01 16 17 H -0.26 -11.21 6.87 99.48 0.68 -10.53 16 18 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 19 H -0.27 -12.89 6.53 99.48 0.65 -12.24 16 20 N -0.46 -13.00 2.81 -514.86 -1.45 -14.45 16 21 C 0.12 2.41 6.03 86.38 0.52 2.93 16 22 C -0.65 -10.27 6.13 71.98 0.44 -9.82 16 23 S 2.44 36.99 5.36 -56.49 -0.30 36.69 16 24 C -0.64 -4.50 10.62 113.37 1.20 -3.29 16 25 O -0.96 -18.03 18.10 -127.37 -2.30 -20.33 16 26 O -0.98 -25.68 18.10 -127.37 -2.31 -27.98 16 27 H 0.10 0.65 8.14 -2.38 -0.02 0.63 16 28 H 0.06 0.62 6.21 -2.39 -0.01 0.60 16 29 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.11 1.50 8.14 -2.38 -0.02 1.48 16 31 H 0.11 1.06 7.27 -2.38 -0.02 1.04 16 32 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.08 3.52 6.33 -2.39 -0.02 3.51 16 34 H 0.07 2.50 8.10 -2.39 -0.02 2.48 16 35 H 0.04 1.88 3.27 -2.38 -0.01 1.87 16 36 H 0.04 1.44 7.22 -2.39 -0.02 1.43 16 37 H 0.07 2.81 6.88 -2.39 -0.02 2.79 16 38 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 39 H 0.11 2.53 8.14 -2.38 -0.02 2.51 16 40 H 0.14 1.85 7.26 -2.39 -0.02 1.84 16 41 H 0.17 1.48 6.21 -2.39 -0.01 1.47 16 42 H 0.14 2.67 6.50 -2.39 -0.02 2.65 16 43 H 0.16 0.16 8.14 -2.39 -0.02 0.14 16 44 H 0.15 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.14 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -85.18 368.81 -0.19 -85.37 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: 0.92 Total: 9.38 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: 7.89 Total: -8.36 kcal Atomic # 7 Polarization: -115.01 SS G_CDS: -5.76 Total: -120.77 kcal Atomic # 8 Polarization: -43.71 SS G_CDS: -4.61 Total: -48.32 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.67 Total: 46.01 kcal Atomic # 16 Polarization: 36.99 SS G_CDS: -0.30 Total: 36.69 kcal Total: -85.18 -0.19 -85.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460446708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.378 kcal (2) G-P(sol) polarization free energy of solvation -85.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds