Wall clock time and date at job start Sat Apr 11 2020 02:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46496 * 109.47383 * 2 1 4 4 C 1.35853 * 126.05521 * 124.99824 * 3 2 1 5 5 C 1.35731 * 107.56000 * 180.02562 * 4 3 2 6 6 N 1.40843 * 126.07342 * 179.97438 * 5 4 3 7 7 C 1.34780 * 120.00047 * 180.02562 * 6 5 4 8 8 O 1.21599 * 119.99658 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00087 * 179.97438 * 7 6 5 10 10 C 1.46498 * 119.99904 * 179.97438 * 9 7 6 11 11 C 1.50695 * 109.47300 * 179.97438 * 10 9 7 12 12 C 1.38300 * 119.93634 * 269.73138 * 11 10 9 13 13 C 1.38103 * 120.07235 * 179.72038 * 12 11 10 14 14 C 1.38881 * 119.92859 * 0.56979 * 13 12 11 15 15 O 1.35743 * 120.07033 * 179.67702 * 14 13 12 16 16 C 1.34829 * 117.00323 * 174.48588 * 15 14 13 17 17 H 1.08000 * 119.99772 * 5.06302 * 16 15 14 18 18 C 1.38655 * 120.00285 * 185.06067 * 16 15 14 19 19 N 1.31559 * 119.99902 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 120.00043 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.46873 * 89.99837 * 20 18 16 22 22 H 1.48495 * 109.47237 * 210.00095 * 20 18 16 23 23 H 1.48505 * 109.47176 * 330.00205 * 20 18 16 24 24 C 1.38884 * 119.86119 * 359.70391 * 14 13 12 25 25 C 1.38100 * 119.93123 * 0.02562 * 24 14 13 26 26 C 1.40241 * 107.84936 * 0.24669 * 5 4 3 27 27 N 1.30837 * 108.34068 * 359.58552 * 26 5 4 28 28 H 1.09003 * 109.46565 * 59.99677 * 1 2 3 29 29 H 1.08993 * 109.47558 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46976 * 300.00303 * 1 2 3 31 31 H 1.09001 * 109.46976 * 239.99697 * 2 1 3 32 32 H 1.09002 * 109.47005 * 120.00624 * 2 1 3 33 33 H 1.07992 * 126.22060 * 0.04553 * 4 3 2 34 34 H 0.96999 * 120.00535 * 359.97438 * 6 5 4 35 35 H 0.96993 * 120.00031 * 359.97438 * 9 7 6 36 36 H 1.08999 * 109.47244 * 60.00112 * 10 9 7 37 37 H 1.09004 * 109.47345 * 300.00174 * 10 9 7 38 38 H 1.08004 * 119.96372 * 359.97187 * 12 11 10 39 39 H 1.07998 * 120.03412 * 180.26808 * 13 12 11 40 40 H 0.97002 * 119.99895 * 179.97438 * 19 18 16 41 41 H 1.07996 * 120.03050 * 179.97438 * 24 14 13 42 42 H 1.08003 * 119.96708 * 180.02562 * 25 24 14 43 43 H 1.07998 * 125.82358 * 179.74154 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8789 1.9250 0.8997 5 6 3.0747 3.2210 0.5473 6 7 3.8983 4.1471 1.2166 7 6 4.0031 5.4102 0.7581 8 8 3.3869 5.7500 -0.2336 9 7 4.7907 6.2964 1.3989 10 6 4.9051 7.6692 0.9002 11 6 5.8386 8.4503 1.7887 12 6 5.3387 9.1391 2.8788 13 6 6.1924 9.8511 3.6982 14 6 7.5526 9.8847 3.4198 15 8 8.3934 10.5890 4.2195 16 6 9.7128 10.4873 3.9611 17 1 10.0530 9.9326 3.0991 18 6 10.6329 11.0949 4.8018 19 7 11.9202 10.9960 4.5493 20 14 10.0446 12.0538 6.2930 21 1 9.9509 11.1427 7.4619 22 1 11.0070 13.1446 6.5914 23 1 8.7079 12.6363 6.0112 24 6 8.0507 9.1966 2.3210 25 6 7.1926 8.4818 1.5087 26 6 2.3064 3.4759 -0.5979 27 7 1.6805 2.3752 -0.9271 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.3260 1.4182 1.7419 34 1 4.3895 3.8761 2.0079 35 1 5.2819 6.0254 2.1901 36 1 3.9220 8.1400 0.9035 37 1 5.2976 7.6549 -0.1166 38 1 4.2802 9.1169 3.0919 39 1 5.8020 10.3853 4.5518 40 1 12.5639 11.4214 5.1373 41 1 9.1079 9.2212 2.1017 42 1 7.5794 7.9462 0.6543 43 1 2.2443 4.4191 -1.1204 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069217708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:32:48 Heat of formation + Delta-G solvation = 54.581134 kcal Electronic energy + Delta-G solvation = -25938.883240 eV Core-core repulsion = 21987.137941 eV Total energy + Delta-G solvation = -3951.745299 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.50465 -39.92600 -39.24081 -37.12848 -35.34922 -34.48369 -33.99319 -32.49154 -30.53610 -30.40493 -30.16581 -28.38752 -26.02556 -24.57337 -24.07697 -22.21685 -21.96061 -21.34163 -20.65671 -20.30299 -18.23717 -17.98071 -17.73380 -17.34363 -16.34767 -15.91639 -15.47655 -15.02833 -14.95032 -14.91631 -14.36831 -14.23000 -14.05567 -13.94562 -13.89035 -13.39578 -13.11756 -12.99091 -12.82407 -12.73716 -12.49923 -12.29455 -12.08411 -11.86581 -11.48892 -10.97721 -10.91830 -10.86956 -10.85033 -10.77815 -10.24209 -10.16839 -9.57320 -9.50371 -9.08351 -8.97240 -8.39778 -7.82222 -7.50714 -6.51782 -4.18797 1.60146 1.85008 2.01091 2.16737 2.55925 2.80266 3.15583 3.19222 3.33369 3.34125 4.12081 4.15014 4.20472 4.44753 4.51867 4.57046 4.72975 4.75244 4.93009 5.00170 5.09404 5.14419 5.26181 5.35132 5.41217 5.49422 5.55124 5.70755 5.72533 5.84504 6.01423 6.04886 6.23438 6.43373 6.49870 6.65692 6.67181 6.79437 6.81235 6.93128 7.11020 7.17382 7.48106 7.52119 7.68797 7.90848 7.92622 8.49717 8.82739 9.43346 10.55295 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.031287 B = 0.001709 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.735271 B =16377.493643 C =16585.217456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.138 3.862 3 N -0.376 5.376 4 C 0.006 3.994 5 C 0.028 3.972 6 N -0.662 5.662 7 C 0.705 3.295 8 O -0.584 6.584 9 N -0.733 5.733 10 C 0.197 3.803 11 C -0.207 4.207 12 C -0.055 4.055 13 C -0.196 4.196 14 C 0.167 3.833 15 O -0.213 6.213 16 C -0.392 4.392 17 H 0.108 0.892 18 C 0.065 3.935 19 N -0.875 5.875 20 Si 0.906 3.094 21 H -0.273 1.273 22 H -0.281 1.281 23 H -0.259 1.259 24 C -0.225 4.225 25 C -0.051 4.051 26 C 0.052 3.948 27 N -0.286 5.286 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.174 0.826 34 H 0.406 0.594 35 H 0.399 0.601 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.115 0.885 39 H 0.118 0.882 40 H 0.281 0.719 41 H 0.134 0.866 42 H 0.112 0.888 43 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.685 -19.535 -4.473 26.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.017 3.983 3 N -0.162 5.162 4 C -0.142 4.142 5 C -0.077 4.077 6 N -0.310 5.310 7 C 0.406 3.594 8 O -0.462 6.462 9 N -0.388 5.388 10 C 0.074 3.926 11 C -0.208 4.208 12 C -0.074 4.074 13 C -0.215 4.215 14 C 0.114 3.886 15 O -0.117 6.117 16 C -0.467 4.467 17 H 0.125 0.875 18 C -0.139 4.139 19 N -0.512 5.512 20 Si 0.731 3.269 21 H -0.198 1.198 22 H -0.207 1.207 23 H -0.183 1.183 24 C -0.244 4.244 25 C -0.070 4.070 26 C -0.135 4.135 27 N -0.108 5.108 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.101 0.899 32 H 0.112 0.888 33 H 0.191 0.809 34 H 0.240 0.760 35 H 0.233 0.767 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.133 0.867 39 H 0.136 0.864 40 H 0.091 0.909 41 H 0.152 0.848 42 H 0.130 0.870 43 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -18.849 -19.611 -5.930 27.840 hybrid contribution 1.282 0.469 2.087 2.494 sum -17.567 -19.142 -3.843 26.264 Atomic orbital electron populations 1.22072 0.93892 1.02753 1.03704 1.21606 0.95918 0.77216 1.03592 1.48421 1.36285 1.10128 1.21362 1.21797 1.00041 0.93571 0.98742 1.17498 1.02225 0.89349 0.98655 1.41890 1.48703 1.08968 1.31479 1.15859 0.80564 0.79950 0.83076 1.90791 1.50061 1.78151 1.27211 1.45443 1.49421 1.11565 1.32365 1.19884 0.98299 0.78349 0.96072 1.19283 0.94004 1.06890 1.00667 1.20551 0.98257 0.95283 0.93285 1.20218 0.90963 1.07054 1.03275 1.19193 0.90117 0.89557 0.89763 1.83573 1.18248 1.58930 1.50930 1.20789 0.76931 1.35731 1.13277 0.87483 1.24489 0.94050 0.96851 0.98533 1.69644 1.00252 1.42699 1.38584 0.86174 0.79460 0.79624 0.81619 1.19829 1.20672 1.18314 1.21285 1.01195 1.04038 0.97868 1.20718 0.92271 0.96391 0.97592 1.24561 0.95011 0.98200 0.95744 1.77347 1.23446 0.96495 1.13502 0.91025 0.90774 0.92074 0.89917 0.88794 0.80862 0.75986 0.76710 0.91403 0.91382 0.86714 0.86376 0.90897 0.84799 0.87038 0.77620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.86 10.10 37.16 0.38 -0.48 16 2 C 0.14 0.73 7.24 -4.04 -0.03 0.70 16 3 N -0.38 -3.48 3.70 -61.02 -0.23 -3.71 16 4 C 0.01 0.05 11.52 -16.67 -0.19 -0.14 16 5 C 0.03 0.31 6.90 -83.86 -0.58 -0.27 16 6 N -0.66 -6.54 5.48 -14.39 -0.08 -6.62 16 7 C 0.71 8.90 8.54 -86.92 -0.74 8.16 16 8 O -0.58 -9.26 13.50 5.28 0.07 -9.18 16 9 N -0.73 -8.31 5.55 -66.41 -0.37 -8.68 16 10 C 0.20 2.52 5.80 -5.20 -0.03 2.49 16 11 C -0.21 -3.04 5.25 -104.58 -0.55 -3.58 16 12 C -0.05 -0.83 9.69 -39.61 -0.38 -1.22 16 13 C -0.20 -3.55 9.99 -39.39 -0.39 -3.95 16 14 C 0.17 3.59 6.65 -39.10 -0.26 3.33 16 15 O -0.21 -5.34 8.59 0.07 0.00 -5.34 16 16 C -0.39 -10.59 9.95 30.89 0.31 -10.28 16 17 H 0.11 2.95 5.44 -52.49 -0.29 2.66 16 18 C 0.06 1.75 5.49 -17.51 -0.10 1.66 16 19 N -0.87 -24.45 13.96 55.48 0.77 -23.67 16 20 Si 0.91 20.89 28.62 -169.99 -4.86 16.03 16 21 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.26 -6.00 7.11 56.52 0.40 -5.60 16 24 C -0.22 -4.48 9.17 -39.39 -0.36 -4.84 16 25 C -0.05 -0.83 9.69 -39.61 -0.38 -1.21 16 26 C 0.05 0.68 10.84 -17.22 -0.19 0.49 16 27 N -0.29 -3.56 12.41 30.70 0.38 -3.18 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.09 0.24 8.07 -51.93 -0.42 -0.18 16 33 H 0.17 0.79 8.06 -52.49 -0.42 0.37 16 34 H 0.41 2.65 8.84 -40.82 -0.36 2.29 16 35 H 0.40 3.82 8.48 -40.82 -0.35 3.48 16 36 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 37 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 38 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 39 H 0.12 2.01 8.06 -52.49 -0.42 1.59 16 40 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 41 H 0.13 2.84 5.64 -52.49 -0.30 2.55 16 42 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 43 H 0.21 2.93 5.91 -52.49 -0.31 2.62 16 LS Contribution 371.59 15.07 5.60 5.60 Total: -1.00 -32.33 371.59 -7.59 -39.92 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -5.37 Total: 7.97 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -3.50 Total: -9.14 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: 0.48 Total: -45.86 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: 0.07 Total: -14.53 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.86 Total: 16.03 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.33 -7.59 -39.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069217708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.500 kcal (2) G-P(sol) polarization free energy of solvation -32.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds