Wall clock time and date at job start Sat Apr 11 2020 02:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46496 * 109.47383 * 2 1 4 4 C 1.35853 * 126.05521 * 124.99824 * 3 2 1 5 5 C 1.35731 * 107.56000 * 180.02562 * 4 3 2 6 6 N 1.40843 * 126.07342 * 179.97438 * 5 4 3 7 7 C 1.34780 * 120.00047 * 180.02562 * 6 5 4 8 8 O 1.21599 * 119.99658 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00087 * 179.97438 * 7 6 5 10 10 C 1.46498 * 119.99904 * 179.97438 * 9 7 6 11 11 C 1.50695 * 109.47300 * 179.97438 * 10 9 7 12 12 C 1.38300 * 119.93634 * 269.73138 * 11 10 9 13 13 C 1.38103 * 120.07235 * 179.72038 * 12 11 10 14 14 C 1.38881 * 119.92859 * 0.56979 * 13 12 11 15 15 O 1.35743 * 120.07033 * 179.67702 * 14 13 12 16 16 C 1.34829 * 117.00323 * 174.48588 * 15 14 13 17 17 H 1.08000 * 119.99772 * 5.06302 * 16 15 14 18 18 C 1.38655 * 120.00285 * 185.06067 * 16 15 14 19 19 N 1.31559 * 119.99902 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 120.00043 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.46873 * 89.99837 * 20 18 16 22 22 H 1.48495 * 109.47237 * 210.00095 * 20 18 16 23 23 H 1.48505 * 109.47176 * 330.00205 * 20 18 16 24 24 C 1.38884 * 119.86119 * 359.70391 * 14 13 12 25 25 C 1.38100 * 119.93123 * 0.02562 * 24 14 13 26 26 C 1.40241 * 107.84936 * 0.24669 * 5 4 3 27 27 N 1.30837 * 108.34068 * 359.58552 * 26 5 4 28 28 H 1.09003 * 109.46565 * 59.99677 * 1 2 3 29 29 H 1.08993 * 109.47558 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46976 * 300.00303 * 1 2 3 31 31 H 1.09001 * 109.46976 * 239.99697 * 2 1 3 32 32 H 1.09002 * 109.47005 * 120.00624 * 2 1 3 33 33 H 1.07992 * 126.22060 * 0.04553 * 4 3 2 34 34 H 0.96999 * 120.00535 * 359.97438 * 6 5 4 35 35 H 0.96993 * 120.00031 * 359.97438 * 9 7 6 36 36 H 1.08999 * 109.47244 * 60.00112 * 10 9 7 37 37 H 1.09004 * 109.47345 * 300.00174 * 10 9 7 38 38 H 1.08004 * 119.96372 * 359.97187 * 12 11 10 39 39 H 1.07998 * 120.03412 * 180.26808 * 13 12 11 40 40 H 0.97002 * 119.99895 * 179.97438 * 19 18 16 41 41 H 1.07996 * 120.03050 * 179.97438 * 24 14 13 42 42 H 1.08003 * 119.96708 * 180.02562 * 25 24 14 43 43 H 1.07998 * 125.82358 * 179.74154 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8789 1.9250 0.8997 5 6 3.0747 3.2210 0.5473 6 7 3.8983 4.1471 1.2166 7 6 4.0031 5.4102 0.7581 8 8 3.3869 5.7500 -0.2336 9 7 4.7907 6.2964 1.3989 10 6 4.9051 7.6692 0.9002 11 6 5.8386 8.4503 1.7887 12 6 5.3387 9.1391 2.8788 13 6 6.1924 9.8511 3.6982 14 6 7.5526 9.8847 3.4198 15 8 8.3934 10.5890 4.2195 16 6 9.7128 10.4873 3.9611 17 1 10.0530 9.9326 3.0991 18 6 10.6329 11.0949 4.8018 19 7 11.9202 10.9960 4.5493 20 14 10.0446 12.0538 6.2930 21 1 9.9509 11.1427 7.4619 22 1 11.0070 13.1446 6.5914 23 1 8.7079 12.6363 6.0112 24 6 8.0507 9.1966 2.3210 25 6 7.1926 8.4818 1.5087 26 6 2.3064 3.4759 -0.5979 27 7 1.6805 2.3752 -0.9271 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.3260 1.4182 1.7419 34 1 4.3895 3.8761 2.0079 35 1 5.2819 6.0254 2.1901 36 1 3.9220 8.1400 0.9035 37 1 5.2976 7.6549 -0.1166 38 1 4.2802 9.1169 3.0919 39 1 5.8020 10.3853 4.5518 40 1 12.5639 11.4214 5.1373 41 1 9.1079 9.2212 2.1017 42 1 7.5794 7.9462 0.6543 43 1 2.2443 4.4191 -1.1204 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069217708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:32:48 Heat of formation + Delta-G solvation = 32.169928 kcal Electronic energy + Delta-G solvation = -25939.855063 eV Core-core repulsion = 21987.137941 eV Total energy + Delta-G solvation = -3952.717122 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.28905 -41.07356 -40.62546 -38.63871 -36.15370 -35.59955 -34.70505 -34.40932 -31.87128 -31.57960 -31.09509 -29.22939 -27.65239 -25.99851 -24.68429 -23.69920 -22.92481 -22.09322 -21.94521 -21.21888 -19.83779 -19.21570 -18.97412 -18.44886 -17.16180 -16.85670 -16.59914 -16.24562 -16.15487 -15.87075 -15.74219 -15.59898 -15.45909 -15.04635 -14.75709 -14.62808 -14.44930 -14.26645 -14.05197 -13.76461 -13.54416 -13.28817 -13.08764 -12.91932 -12.56082 -12.46350 -12.36544 -12.29793 -11.92802 -11.73214 -11.59963 -11.28845 -11.23532 -10.89958 -10.32967 -10.09479 -9.81458 -9.09026 -8.59558 -8.49996 -6.22956 0.48194 0.56803 0.88032 1.33278 1.35861 1.46671 1.53083 1.64705 1.92534 2.28246 2.42552 2.76227 3.04251 3.13788 3.44088 3.71033 3.87130 4.00683 4.04229 4.14457 4.16399 4.24043 4.42382 4.47910 4.56657 4.59480 4.61887 4.76762 4.84271 4.86340 4.96829 4.98429 5.18543 5.24522 5.29942 5.35388 5.51149 5.55553 5.73147 5.80483 5.85866 5.89670 6.01601 6.17679 6.21189 6.71405 6.84265 7.09614 7.57484 7.58233 8.61188 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.031287 B = 0.001709 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.735271 B =16377.493643 C =16585.217456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.127 3.873 3 N -0.371 5.371 4 C 0.033 3.967 5 C -0.002 4.002 6 N -0.646 5.646 7 C 0.702 3.298 8 O -0.620 6.620 9 N -0.724 5.724 10 C 0.202 3.798 11 C -0.172 4.172 12 C -0.043 4.043 13 C -0.192 4.192 14 C 0.129 3.871 15 O -0.242 6.242 16 C -0.400 4.400 17 H 0.083 0.917 18 C 0.011 3.989 19 N -0.921 5.921 20 Si 0.970 3.030 21 H -0.265 1.265 22 H -0.270 1.270 23 H -0.262 1.262 24 C -0.239 4.239 25 C -0.048 4.048 26 C 0.028 3.972 27 N -0.318 5.318 28 H 0.045 0.955 29 H 0.100 0.900 30 H 0.053 0.947 31 H 0.090 0.910 32 H 0.133 0.867 33 H 0.221 0.779 34 H 0.423 0.577 35 H 0.410 0.590 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.154 0.846 39 H 0.131 0.869 40 H 0.285 0.715 41 H 0.109 0.891 42 H 0.134 0.866 43 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.208 -22.006 -3.313 30.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.007 3.993 3 N -0.157 5.157 4 C -0.116 4.116 5 C -0.107 4.107 6 N -0.296 5.296 7 C 0.402 3.598 8 O -0.500 6.500 9 N -0.380 5.380 10 C 0.079 3.921 11 C -0.173 4.173 12 C -0.061 4.061 13 C -0.211 4.211 14 C 0.079 3.921 15 O -0.150 6.150 16 C -0.476 4.476 17 H 0.100 0.900 18 C -0.188 4.188 19 N -0.562 5.562 20 Si 0.792 3.208 21 H -0.190 1.190 22 H -0.195 1.195 23 H -0.187 1.187 24 C -0.258 4.258 25 C -0.067 4.067 26 C -0.159 4.159 27 N -0.142 5.142 28 H 0.065 0.935 29 H 0.118 0.882 30 H 0.072 0.928 31 H 0.108 0.892 32 H 0.151 0.849 33 H 0.238 0.762 34 H 0.261 0.739 35 H 0.246 0.754 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.172 0.828 39 H 0.149 0.851 40 H 0.094 0.906 41 H 0.127 0.873 42 H 0.152 0.848 43 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -21.408 -22.142 -4.774 31.167 hybrid contribution 1.734 0.910 1.487 2.459 sum -19.674 -21.232 -3.287 29.131 Atomic orbital electron populations 1.22037 0.93984 1.03937 1.02049 1.22054 0.95925 0.75418 1.05867 1.48878 1.35586 1.10817 1.20427 1.22494 0.97981 0.92500 0.98594 1.17673 1.03394 0.90667 0.98953 1.41617 1.48368 1.07851 1.31721 1.15956 0.80359 0.80748 0.82726 1.90793 1.51443 1.78956 1.28835 1.45131 1.49431 1.10793 1.32626 1.19766 0.97975 0.78916 0.95431 1.19526 0.93381 1.04778 0.99655 1.20959 0.99749 0.93360 0.92078 1.20521 0.89610 1.06935 1.04061 1.19755 0.91208 0.90771 0.90335 1.83521 1.17227 1.61549 1.52663 1.20710 0.78422 1.35667 1.12787 0.89962 1.25277 0.94112 0.98018 1.01360 1.69730 1.01286 1.44885 1.40273 0.85223 0.78748 0.78534 0.78264 1.18973 1.19454 1.18652 1.21267 1.00693 1.05206 0.98640 1.20928 0.92667 0.95596 0.97512 1.24345 0.96537 0.97905 0.97068 1.77280 1.24455 0.97270 1.15167 0.93538 0.88173 0.92814 0.89209 0.84921 0.76232 0.73894 0.75402 0.90564 0.91467 0.82805 0.85136 0.90573 0.87347 0.84844 0.79890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 10.10 71.98 0.73 -0.60 16 2 C 0.13 0.93 7.24 86.38 0.63 1.56 16 3 N -0.37 -5.97 3.70 -346.98 -1.29 -7.26 16 4 C 0.03 0.44 11.52 83.49 0.96 1.40 16 5 C 0.00 -0.03 6.90 37.60 0.26 0.22 16 6 N -0.65 -11.11 5.48 -317.70 -1.74 -12.85 16 7 C 0.70 16.28 8.54 179.05 1.53 17.81 16 8 O -0.62 -19.21 13.50 -4.03 -0.05 -19.26 16 9 N -0.72 -14.15 5.55 -482.29 -2.68 -16.83 16 10 C 0.20 4.52 5.80 85.63 0.50 5.02 16 11 C -0.17 -4.50 5.25 -19.83 -0.10 -4.60 16 12 C -0.04 -1.15 9.69 22.25 0.22 -0.93 16 13 C -0.19 -6.61 9.99 22.39 0.22 -6.39 16 14 C 0.13 5.62 6.65 22.58 0.15 5.77 16 15 O -0.24 -12.59 8.59 -22.66 -0.19 -12.79 16 16 C -0.40 -22.77 9.95 67.92 0.68 -22.09 16 17 H 0.08 4.91 5.44 -2.91 -0.02 4.89 16 18 C 0.01 0.62 5.49 84.83 0.47 1.09 16 19 N -0.92 -53.82 13.96 21.61 0.30 -53.52 16 20 Si 0.97 44.10 28.62 68.60 1.96 46.06 16 21 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 22 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 23 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 24 C -0.24 -9.72 9.17 22.39 0.21 -9.52 16 25 C -0.05 -1.51 9.69 22.25 0.22 -1.29 16 26 C 0.03 0.72 10.84 85.33 0.92 1.65 16 27 N -0.32 -7.83 12.41 -56.78 -0.70 -8.54 16 28 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.13 0.00 8.07 -2.39 -0.02 -0.02 16 33 H 0.22 0.69 8.06 -2.91 -0.02 0.67 16 34 H 0.42 4.01 8.84 -92.71 -0.82 3.19 16 35 H 0.41 6.33 8.48 -92.71 -0.79 5.55 16 36 H 0.08 1.67 8.08 -2.39 -0.02 1.65 16 37 H 0.07 1.59 8.08 -2.38 -0.02 1.57 16 38 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 39 H 0.13 4.15 8.06 -2.91 -0.02 4.13 16 40 H 0.28 15.26 8.31 -92.71 -0.77 14.49 16 41 H 0.11 4.95 5.64 -2.91 -0.02 4.94 16 42 H 0.13 3.56 8.06 -2.91 -0.02 3.54 16 43 H 0.18 5.53 5.91 -2.91 -0.02 5.51 16 Total: -1.00 -76.30 371.59 2.64 -73.66 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: -0.53 Total: 22.23 kcal Atomic # 6 Polarization: -18.48 SS G_CDS: 7.57 Total: -10.91 kcal Atomic # 7 Polarization: -92.88 SS G_CDS: -6.11 Total: -98.99 kcal Atomic # 8 Polarization: -31.80 SS G_CDS: -0.25 Total: -32.05 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 1.96 Total: 46.06 kcal Total: -76.30 2.64 -73.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069217708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.830 kcal (2) G-P(sol) polarization free energy of solvation -76.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds