Wall clock time and date at job start Sat Apr 11 2020 02:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46490 * 109.47349 * 2 1 4 4 C 1.36886 * 126.39807 * 266.61507 * 3 2 1 5 5 C 1.34674 * 106.81697 * 180.02562 * 4 3 2 6 6 N 1.34130 * 108.02013 * 0.02562 * 5 4 3 7 7 C 1.30502 * 109.25855 * 359.72329 * 6 5 4 8 8 C 1.50696 * 125.65608 * 180.29083 * 7 6 5 9 9 H 1.08998 * 109.47565 * 201.71465 * 8 7 6 10 10 C 1.53000 * 109.46869 * 81.70956 * 8 7 6 11 11 N 1.46499 * 109.46772 * 321.71611 * 8 7 6 12 12 S 1.65600 * 119.99819 * 214.25259 * 11 8 7 13 13 O 1.42098 * 106.40634 * 180.70871 * 12 11 8 14 14 O 1.42100 * 106.40437 * 313.63174 * 12 11 8 15 15 N 1.65601 * 107.21797 * 67.17243 * 12 11 8 16 16 C 1.46500 * 120.00360 * 94.48134 * 15 12 11 17 17 C 1.46503 * 120.00133 * 274.47911 * 15 12 11 18 18 H 1.09001 * 109.46725 * 3.18930 * 17 15 12 19 19 C 1.52999 * 109.47053 * 123.18567 * 17 15 12 20 20 C 1.50693 * 109.47243 * 243.18876 * 17 15 12 21 21 H 1.07996 * 120.00462 * 359.97438 * 20 17 15 22 22 C 1.37881 * 119.99863 * 179.97438 * 20 17 15 23 23 N 1.31512 * 120.00127 * 0.02562 * 22 20 17 24 24 Si 1.86801 * 119.99889 * 179.97438 * 22 20 17 25 25 H 1.48489 * 109.47236 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.46698 * 120.00413 * 24 22 20 27 27 H 1.48500 * 109.47135 * 240.00120 * 24 22 20 28 28 H 1.09003 * 109.46764 * 300.00170 * 1 2 3 29 29 H 1.09005 * 109.47035 * 59.99799 * 1 2 3 30 30 H 1.08995 * 109.47378 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47016 * 120.00203 * 2 1 3 32 32 H 1.09003 * 109.46764 * 239.99830 * 2 1 3 33 33 H 1.08001 * 126.59110 * 0.03714 * 4 3 2 34 34 H 1.07994 * 125.99106 * 180.02562 * 5 4 3 35 35 H 1.08999 * 109.47034 * 180.02562 * 10 8 7 36 36 H 1.09004 * 109.47058 * 300.00413 * 10 8 7 37 37 H 1.08996 * 109.47255 * 60.00441 * 10 8 7 38 38 H 0.96997 * 120.00494 * 34.25261 * 11 8 7 39 39 H 1.08998 * 109.47430 * 90.00089 * 16 15 12 40 40 H 1.08999 * 109.47467 * 210.00298 * 16 15 12 41 41 H 1.09006 * 109.46708 * 329.99589 * 16 15 12 42 42 H 1.09004 * 109.47088 * 186.96725 * 19 17 15 43 43 H 1.09006 * 109.47214 * 306.96105 * 19 17 15 44 44 H 1.09000 * 109.47360 * 66.96770 * 19 17 15 45 45 H 0.96999 * 120.00092 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3505 2.1252 -1.0999 5 6 2.7489 3.3302 -0.6493 6 7 2.6630 3.3218 0.6892 7 6 2.2208 2.1595 1.0849 8 6 1.9792 1.7521 2.5155 9 1 1.9900 0.6648 2.5905 10 6 0.6188 2.2816 2.9736 11 7 3.0325 2.3108 3.3668 12 16 3.5693 1.4628 4.6840 13 8 4.5641 2.2679 5.3014 14 8 2.4100 1.0019 5.3643 15 7 4.3452 0.1146 4.1160 16 6 5.7977 0.1307 3.9260 17 6 3.5791 -1.0945 3.8035 18 1 2.5169 -0.9001 3.9523 19 6 3.8255 -1.4920 2.3467 20 6 4.0167 -2.2151 4.7110 21 1 4.7886 -2.0441 5.4466 22 6 3.4316 -3.4588 4.6020 23 7 2.4920 -3.6673 3.7058 24 14 3.9746 -4.8481 5.7265 25 1 5.0390 -4.3591 6.6391 26 1 2.8154 -5.3194 6.5262 27 1 4.5005 -5.9703 4.9083 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 2.3021 1.8072 -2.1309 34 1 3.0797 4.1581 -1.2588 35 1 0.4442 1.9873 4.0085 36 1 0.6081 3.3690 2.8986 37 1 -0.1649 1.8660 2.3403 38 1 3.4154 3.1774 3.1590 39 1 6.2878 -0.1968 4.8429 40 1 6.0651 -0.5419 3.1110 41 1 6.1211 1.1428 3.6827 42 1 3.1635 -2.3152 2.0778 43 1 3.6258 -0.6387 1.6984 44 1 4.8625 -1.8054 2.2260 45 1 2.0801 -4.5421 3.6295 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451925348.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:32:36 Heat of formation + Delta-G solvation = -14.128007 kcal Electronic energy + Delta-G solvation = -28777.409975 eV Core-core repulsion = 24958.129175 eV Total energy + Delta-G solvation = -3819.280800 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.151 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.10865 -36.83666 -36.27155 -35.90192 -35.20045 -34.96636 -32.62943 -30.28054 -29.98325 -29.20679 -28.45234 -25.72022 -25.20050 -23.90464 -23.32983 -21.35218 -20.82613 -19.58442 -18.79915 -17.64891 -17.02276 -16.77485 -16.24207 -15.81285 -15.42538 -15.04946 -14.88368 -14.37116 -13.80801 -13.71570 -13.60149 -13.39062 -13.34493 -13.17844 -12.88278 -12.66307 -12.29653 -12.08300 -11.94394 -11.79717 -11.66166 -11.51121 -11.36365 -11.25178 -11.18759 -11.03844 -11.01687 -10.85528 -10.53335 -10.37041 -10.08356 -9.91610 -9.56662 -9.47156 -9.31071 -8.53686 -8.34735 -8.02873 -6.16250 -4.20333 1.18600 2.07858 2.77243 3.17265 3.23717 3.32405 3.37344 3.56706 4.07237 4.34400 4.39696 4.63310 4.74113 4.91547 4.95434 5.04298 5.17409 5.22594 5.30038 5.34920 5.46701 5.57526 5.63966 5.65083 5.72654 5.85948 6.00434 6.14213 6.17396 6.32605 6.36555 6.41404 6.51757 6.59773 6.69228 6.81159 6.83059 7.18015 7.20524 7.40070 7.54569 7.68863 7.91231 8.16461 8.17911 8.82040 9.45781 10.90384 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.012647 B = 0.005365 C = 0.004398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.464611 B = 5218.177962 C = 6364.437078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.084 3.916 3 N -0.444 5.444 4 C -0.058 4.058 5 C -0.032 4.032 6 N -0.485 5.485 7 C 0.209 3.791 8 C 0.243 3.757 9 H 0.101 0.899 10 C -0.165 4.165 11 N -1.118 6.118 12 S 2.778 3.222 13 O -0.993 6.993 14 O -0.970 6.970 15 N -0.993 5.993 16 C 0.110 3.890 17 C 0.268 3.732 18 H 0.054 0.946 19 C -0.149 4.149 20 C -0.516 4.516 21 H 0.064 0.936 22 C 0.065 3.935 23 N -0.893 5.893 24 Si 0.898 3.102 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.284 1.284 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.082 0.918 31 H 0.109 0.891 32 H 0.094 0.906 33 H 0.171 0.829 34 H 0.167 0.833 35 H 0.083 0.917 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.419 0.581 39 H 0.049 0.951 40 H 0.070 0.930 41 H 0.051 0.949 42 H 0.090 0.910 43 H 0.008 0.992 44 H 0.039 0.961 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.720 7.893 -10.979 13.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.038 4.038 3 N -0.127 5.127 4 C -0.191 4.191 5 C -0.180 4.180 6 N -0.203 5.203 7 C -0.055 4.055 8 C 0.133 3.867 9 H 0.118 0.882 10 C -0.225 4.225 11 N -0.877 5.877 12 S 2.786 3.214 13 O -0.977 6.977 14 O -0.953 6.953 15 N -0.836 5.836 16 C -0.036 4.036 17 C 0.165 3.835 18 H 0.072 0.928 19 C -0.208 4.208 20 C -0.556 4.556 21 H 0.082 0.918 22 C -0.137 4.137 23 N -0.532 5.532 24 Si 0.726 3.274 25 H -0.197 1.197 26 H -0.209 1.209 27 H -0.210 1.210 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.100 0.900 31 H 0.127 0.873 32 H 0.112 0.888 33 H 0.189 0.811 34 H 0.184 0.816 35 H 0.102 0.898 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.253 0.747 39 H 0.068 0.932 40 H 0.088 0.912 41 H 0.070 0.930 42 H 0.109 0.891 43 H 0.027 0.973 44 H 0.058 0.942 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.879 8.311 -9.562 12.992 hybrid contribution 0.377 -1.315 -0.795 1.582 sum -2.502 6.996 -10.357 12.746 Atomic orbital electron populations 1.22195 0.93854 1.03738 1.02936 1.22176 0.95984 0.79566 1.06037 1.45469 1.48133 1.12656 1.06407 1.22671 1.09785 0.94056 0.92616 1.22232 1.07126 0.97462 0.91198 1.70087 1.18962 1.19347 1.11951 1.23201 1.03676 0.87881 0.90728 1.18841 0.88342 0.98158 0.81367 0.88176 1.22336 0.94559 1.02405 1.03195 1.56216 1.50477 1.33521 1.47468 1.02063 0.73367 0.72524 0.73407 1.93554 1.60272 1.69681 1.74158 1.93607 1.49992 1.80983 1.70728 1.57745 1.15272 1.27661 1.82904 1.21139 0.80180 1.00475 1.01815 1.18711 0.90923 0.81011 0.92850 0.92828 1.22223 1.01914 0.99746 0.96934 1.21366 1.21557 0.94460 1.18211 0.91827 1.24876 0.94762 0.98560 0.95545 1.69838 1.25847 1.23264 1.34277 0.86437 0.78680 0.81671 0.80630 1.19711 1.20872 1.21042 0.91489 0.92190 0.89950 0.87304 0.88765 0.81124 0.81566 0.89769 0.91365 0.91733 0.74668 0.93233 0.91172 0.93014 0.89121 0.97278 0.94177 0.92793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.64 10.24 37.16 0.38 -1.26 16 2 C 0.08 0.94 6.59 -4.05 -0.03 0.92 16 3 N -0.44 -5.69 2.75 -113.91 -0.31 -6.01 16 4 C -0.06 -0.66 11.58 -16.56 -0.19 -0.85 16 5 C -0.03 -0.40 11.87 -17.81 -0.21 -0.61 16 6 N -0.48 -7.42 10.81 -10.81 -0.12 -7.54 16 7 C 0.21 3.11 6.79 -155.41 -1.06 2.06 16 8 C 0.24 3.78 3.07 -69.08 -0.21 3.57 16 9 H 0.10 1.66 4.66 -51.93 -0.24 1.41 16 10 C -0.17 -2.32 9.50 37.16 0.35 -1.96 16 11 N -1.12 -18.33 5.53 -5.88 -0.03 -18.36 16 12 S 2.78 54.96 6.01 -107.50 -0.65 54.32 16 13 O -0.99 -21.09 17.06 -57.17 -0.98 -22.06 16 14 O -0.97 -21.88 16.03 -57.17 -0.92 -22.80 16 15 N -0.99 -20.25 3.12 -115.85 -0.36 -20.61 16 16 C 0.11 1.99 9.69 59.85 0.58 2.57 16 17 C 0.27 6.12 1.86 -69.08 -0.13 5.99 16 18 H 0.05 1.32 6.37 -51.93 -0.33 0.99 16 19 C -0.15 -3.05 7.94 37.16 0.30 -2.76 16 20 C -0.52 -13.36 8.41 -34.44 -0.29 -13.65 16 21 H 0.06 1.68 7.75 -52.49 -0.41 1.27 16 22 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 23 N -0.89 -23.16 11.40 55.43 0.63 -22.53 16 24 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 25 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 28 H 0.07 0.70 6.61 -51.93 -0.34 0.36 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.11 1.44 4.88 -51.93 -0.25 1.19 16 32 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.17 1.37 8.06 -52.49 -0.42 0.94 16 34 H 0.17 1.66 8.06 -52.49 -0.42 1.24 16 35 H 0.08 1.26 7.56 -51.93 -0.39 0.87 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.06 0.78 6.61 -51.93 -0.34 0.44 16 38 H 0.42 6.42 8.47 -34.47 -0.29 6.12 16 39 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.07 1.21 6.42 -51.93 -0.33 0.87 16 41 H 0.05 0.83 7.67 -51.93 -0.40 0.43 16 42 H 0.09 2.00 6.29 -51.93 -0.33 1.68 16 43 H 0.01 0.15 6.15 -51.93 -0.32 -0.17 16 44 H 0.04 0.82 6.89 -51.93 -0.36 0.46 16 45 H 0.26 6.51 8.31 -40.82 -0.34 6.17 16 LS Contribution 367.88 15.07 5.54 5.54 Total: -1.00 -31.57 367.88 -9.24 -40.82 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -6.43 Total: 8.13 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: -0.60 Total: -4.41 kcal Atomic # 7 Polarization: -74.85 SS G_CDS: -0.19 Total: -75.04 kcal Atomic # 8 Polarization: -42.97 SS G_CDS: -1.89 Total: -44.87 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: 54.96 SS G_CDS: -0.65 Total: 54.32 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.57 -9.24 -40.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451925348.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.688 kcal (2) G-P(sol) polarization free energy of solvation -31.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds