Wall clock time and date at job start Sat Apr 11 2020 02:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46501 * 109.47204 * 2 1 4 4 C 1.46496 * 120.00027 * 274.20456 * 3 2 1 5 5 C 1.50705 * 109.47149 * 274.99717 * 4 3 2 6 6 H 1.07998 * 119.99762 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00132 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99426 * 0.02562 * 7 5 4 9 9 Si 1.86792 * 120.00080 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47391 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47326 * 119.99973 * 9 7 5 12 12 H 1.48500 * 109.47009 * 240.00033 * 9 7 5 13 13 S 1.65601 * 119.99596 * 94.20422 * 3 2 1 14 14 O 1.42106 * 106.40161 * 159.17985 * 13 3 2 15 15 O 1.42101 * 106.40484 * 26.26000 * 13 3 2 16 16 N 1.65598 * 107.22023 * 272.71861 * 13 3 2 17 17 C 1.46504 * 120.00005 * 294.77080 * 16 13 3 18 18 H 1.09004 * 109.46832 * 4.93076 * 17 16 13 19 19 C 1.53002 * 109.47085 * 244.93423 * 17 16 13 20 20 C 1.50702 * 109.47275 * 124.93305 * 17 16 13 21 21 C 1.39868 * 126.04039 * 40.15054 * 20 17 16 22 22 N 1.30833 * 108.20216 * 180.23255 * 21 20 17 23 23 N 1.40087 * 108.20506 * 359.78213 * 22 21 20 24 24 C 1.46498 * 126.03691 * 180.02562 * 23 22 21 25 25 C 1.53005 * 109.47153 * 304.97347 * 24 23 22 26 26 C 1.34949 * 107.92434 * 359.97438 * 23 22 21 27 27 H 1.09007 * 109.47190 * 64.66821 * 1 2 3 28 28 H 1.09000 * 109.47454 * 184.66601 * 1 2 3 29 29 H 1.09001 * 109.47360 * 304.67209 * 1 2 3 30 30 H 1.09003 * 109.47473 * 240.00257 * 2 1 3 31 31 H 1.09003 * 109.46951 * 120.00342 * 2 1 3 32 32 H 1.08996 * 109.47120 * 34.99963 * 4 3 2 33 33 H 1.09002 * 109.46758 * 155.00097 * 4 3 2 34 34 H 0.97002 * 119.99386 * 179.97438 * 8 7 5 35 35 H 0.96997 * 120.00216 * 114.76718 * 16 13 3 36 36 H 1.09001 * 109.47116 * 295.52132 * 19 17 16 37 37 H 1.09008 * 109.47209 * 55.51294 * 19 17 16 38 38 H 1.08995 * 109.47374 * 175.52064 * 19 17 16 39 39 H 1.08002 * 125.90008 * 0.02562 * 21 20 17 40 40 H 1.08995 * 109.47440 * 64.97297 * 24 23 22 41 41 H 1.09005 * 109.46979 * 184.97436 * 24 23 22 42 42 H 1.08991 * 109.46805 * 59.99763 * 25 24 23 43 43 H 1.08998 * 109.47090 * 180.02562 * 25 24 23 44 44 H 1.09002 * 109.46923 * 299.99869 * 25 24 23 45 45 H 1.08001 * 126.12675 * 179.97438 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1748 2.1028 -1.2653 5 6 3.5193 1.7802 -1.8647 6 1 4.1900 1.1048 -1.3543 7 6 3.8932 2.3472 -3.0645 8 7 3.0767 3.1700 -3.6856 9 14 5.5595 1.9467 -3.8078 10 1 6.2840 1.0028 -2.9192 11 1 5.3694 1.3239 -5.1423 12 1 6.3500 3.1954 -3.9523 13 16 2.3934 2.1267 1.4303 14 8 3.2637 3.2023 1.1061 15 8 2.7407 1.0938 2.3423 16 7 0.9998 2.8105 2.0070 17 6 0.3597 3.9023 1.2691 18 1 0.8899 4.0666 0.3310 19 6 0.4025 5.1800 2.1097 20 6 -1.0740 3.5397 0.9789 21 6 -1.9518 2.8905 1.8531 22 7 -3.1015 2.7463 1.2456 23 7 -2.9930 3.3045 -0.0347 24 6 -4.0524 3.3557 -1.0452 25 6 -4.5804 1.9429 -1.3026 26 6 -1.7405 3.7878 -0.1722 27 1 -0.3634 0.4397 -0.9289 28 1 -0.3634 -1.0242 0.0836 29 1 -0.3634 0.5846 0.8452 30 1 1.8933 -0.5138 -0.8900 31 1 1.8932 -0.5139 0.8900 32 1 1.3873 1.8007 -1.9556 33 1 2.1063 3.1753 -1.0827 34 1 3.3399 3.5692 -4.5296 35 1 0.6072 2.4882 2.8334 36 1 -0.1943 5.0419 3.0113 37 1 1.4340 5.3983 2.3867 38 1 -0.0016 6.0099 1.5301 39 1 -1.7195 2.5617 2.8553 40 1 -4.8653 3.9878 -0.6877 41 1 -3.6517 3.7682 -1.9712 42 1 -4.9810 1.5305 -0.3767 43 1 -5.3683 1.9810 -2.0548 44 1 -3.7675 1.3109 -1.6602 45 1 -1.3403 4.2798 -1.0464 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452004367.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:32:55 Heat of formation + Delta-G solvation = -5.316797 kcal Electronic energy + Delta-G solvation = -28150.724163 eV Core-core repulsion = 24331.825446 eV Total energy + Delta-G solvation = -3818.898717 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.151 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -41.19092 -36.69192 -36.25502 -35.89051 -35.07716 -34.13782 -32.65362 -30.61507 -29.95005 -29.83638 -28.19236 -26.55406 -23.98283 -23.14699 -22.85870 -21.67069 -20.83128 -19.89566 -18.67042 -17.39753 -17.16755 -16.55883 -16.19507 -15.67245 -15.49950 -14.97442 -14.40415 -14.24013 -14.22593 -13.75781 -13.63769 -13.36686 -13.18645 -12.88176 -12.67680 -12.53926 -12.26287 -12.08336 -11.94058 -11.86129 -11.71973 -11.60597 -11.42545 -11.30733 -11.24386 -11.05896 -10.98588 -10.87583 -10.53297 -10.39167 -10.29069 -9.97588 -9.71908 -9.35652 -9.28409 -8.43996 -8.31090 -8.00746 -6.06658 -4.09280 1.32292 1.96848 2.52225 2.85874 3.31057 3.38962 3.44611 3.64068 4.23830 4.38481 4.45873 4.78661 4.89933 4.98882 5.01909 5.10083 5.21964 5.28269 5.37653 5.42247 5.47790 5.51153 5.56596 5.63813 5.79112 5.81836 5.82219 5.92353 5.96583 6.07978 6.11029 6.33176 6.35091 6.50634 6.66654 6.69060 6.71486 7.06141 7.21447 7.32340 7.47255 7.68563 7.76177 7.92469 8.22667 8.93547 9.55881 11.01913 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.011517 B = 0.004833 C = 0.004144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2430.518326 B = 5792.562271 C = 6755.611139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.121 3.879 3 N -0.989 5.989 4 C 0.260 3.740 5 C -0.526 4.526 6 H 0.060 0.940 7 C 0.062 3.938 8 N -0.897 5.897 9 Si 0.895 3.105 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.282 1.282 13 S 2.780 3.220 14 O -0.965 6.965 15 O -1.001 7.001 16 N -1.125 6.125 17 C 0.231 3.769 18 H 0.098 0.902 19 C -0.154 4.154 20 C -0.239 4.239 21 C 0.060 3.940 22 N -0.299 5.299 23 N -0.372 5.372 24 C 0.132 3.868 25 C -0.165 4.165 26 C 0.070 3.930 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.033 0.967 33 H 0.036 0.964 34 H 0.262 0.738 35 H 0.406 0.594 36 H 0.056 0.944 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.176 0.824 40 H 0.080 0.920 41 H 0.096 0.904 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.063 0.937 45 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.918 1.143 6.847 16.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.006 4.006 3 N -0.831 5.831 4 C 0.138 3.862 5 C -0.565 4.565 6 H 0.078 0.922 7 C -0.139 4.139 8 N -0.536 5.536 9 Si 0.723 3.277 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.208 1.208 13 S 2.788 3.212 14 O -0.948 6.948 15 O -0.985 6.985 16 N -0.881 5.881 17 C 0.123 3.877 18 H 0.115 0.885 19 C -0.213 4.213 20 C -0.252 4.252 21 C -0.127 4.127 22 N -0.120 5.120 23 N -0.155 5.155 24 C 0.011 3.989 25 C -0.222 4.222 26 C -0.077 4.077 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.238 0.762 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.193 0.807 40 H 0.099 0.901 41 H 0.114 0.886 42 H 0.087 0.913 43 H 0.091 0.909 44 H 0.082 0.918 45 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -15.289 0.928 6.882 16.792 hybrid contribution 1.100 -0.011 -0.563 1.235 sum -14.190 0.917 6.319 15.560 Atomic orbital electron populations 1.22196 0.97149 1.00885 1.02157 1.21089 0.92962 0.83252 1.03253 1.57663 1.80973 1.21454 1.23016 1.19004 0.97084 0.91078 0.79041 1.21561 1.01799 1.27579 1.05584 0.92173 1.24902 0.97351 0.94863 0.96826 1.69917 1.36133 1.30637 1.16912 0.86485 0.84080 0.78346 0.78802 1.19655 1.21063 1.20835 1.01984 0.73361 0.73217 0.72667 1.93628 1.62053 1.55244 1.83923 1.93525 1.82521 1.58114 1.64366 1.56311 1.47391 1.48651 1.35788 1.18820 0.88048 0.85699 0.95179 0.88458 1.22141 1.02465 0.96618 1.00068 1.20261 0.97994 1.11665 0.95249 1.23533 0.90439 0.98829 0.99883 1.77257 1.22784 1.20466 0.91469 1.48602 1.09900 1.45133 1.11870 1.21652 0.88986 0.99251 0.89048 1.22044 1.01755 0.95642 1.02809 1.22403 0.85454 0.99900 0.99954 0.92540 0.92762 0.92942 0.89977 0.90832 0.94931 0.94568 0.92868 0.76217 0.92527 0.91625 0.91785 0.80746 0.90144 0.88572 0.91279 0.90933 0.91808 0.80717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 10.24 37.15 0.38 -2.08 16 2 C 0.12 2.13 6.40 -4.04 -0.03 2.11 16 3 N -0.99 -20.10 2.82 -115.66 -0.33 -20.43 16 4 C 0.26 6.25 5.09 -5.19 -0.03 6.23 16 5 C -0.53 -14.47 9.38 -34.44 -0.32 -14.80 16 6 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 8 N -0.90 -25.33 13.29 55.43 0.74 -24.60 16 9 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 10 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 S 2.78 54.63 5.96 -107.50 -0.64 53.99 16 14 O -0.97 -22.72 16.66 -57.17 -0.95 -23.67 16 15 O -1.00 -21.01 16.75 -57.17 -0.96 -21.97 16 16 N -1.12 -16.36 5.30 -5.88 -0.03 -16.39 16 17 C 0.23 3.22 3.33 -69.08 -0.23 2.99 16 18 H 0.10 1.57 6.47 -51.93 -0.34 1.23 16 19 C -0.15 -1.85 9.50 37.16 0.35 -1.50 16 20 C -0.24 -3.06 5.09 -105.05 -0.53 -3.60 16 21 C 0.06 0.74 11.49 -17.37 -0.20 0.54 16 22 N -0.30 -3.95 12.42 30.62 0.38 -3.57 16 23 N -0.37 -4.41 3.68 -61.36 -0.23 -4.63 16 24 C 0.13 1.12 7.23 -4.04 -0.03 1.09 16 25 C -0.16 -1.37 10.10 37.16 0.38 -0.99 16 26 C 0.07 0.86 11.36 -17.22 -0.20 0.66 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.08 1.49 8.10 -51.93 -0.42 1.07 16 31 H 0.07 1.25 6.96 -51.93 -0.36 0.89 16 32 H 0.03 0.80 8.11 -51.93 -0.42 0.38 16 33 H 0.04 0.92 6.28 -51.93 -0.33 0.59 16 34 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 35 H 0.41 4.81 8.48 -34.47 -0.29 4.52 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.18 1.75 7.85 -52.49 -0.41 1.34 16 40 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.10 0.65 8.07 -51.93 -0.42 0.23 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.18 1.90 8.06 -52.49 -0.42 1.48 16 LS Contribution 388.33 15.07 5.85 5.85 Total: -1.00 -34.23 388.33 -8.93 -43.16 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -7.18 Total: 3.38 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: -0.55 Total: -7.72 kcal Atomic # 7 Polarization: -70.15 SS G_CDS: 0.53 Total: -69.62 kcal Atomic # 8 Polarization: -43.73 SS G_CDS: -1.91 Total: -45.64 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: 54.63 SS G_CDS: -0.64 Total: 53.99 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.23 -8.93 -43.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452004367.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.842 kcal (2) G-P(sol) polarization free energy of solvation -34.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds