Wall clock time and date at job start Sat Apr 11 2020 02:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.46905 * 2 1 4 4 C 1.46491 * 119.99917 * 295.12938 * 3 2 1 5 5 C 1.50703 * 109.47224 * 274.99701 * 4 3 2 6 6 H 1.07998 * 119.99595 * 0.02562 * 5 4 3 7 7 C 1.37882 * 119.99979 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00135 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99750 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46752 * 90.00421 * 9 7 5 11 11 H 1.48496 * 109.46850 * 210.00169 * 9 7 5 12 12 H 1.48496 * 109.47274 * 330.00244 * 9 7 5 13 13 S 1.65600 * 119.99719 * 115.12767 * 3 2 1 14 14 O 1.42098 * 106.40389 * 327.40380 * 13 3 2 15 15 O 1.42096 * 106.40099 * 194.47997 * 13 3 2 16 16 N 1.65600 * 107.21721 * 80.94049 * 13 3 2 17 17 C 1.46503 * 119.99759 * 66.10655 * 16 13 3 18 18 H 1.08997 * 109.47515 * 336.68681 * 17 16 13 19 19 C 1.53005 * 109.47052 * 96.68493 * 17 16 13 20 20 C 1.50704 * 109.47317 * 216.68073 * 17 16 13 21 21 C 1.39869 * 126.03547 * 320.02968 * 20 17 16 22 22 N 1.30838 * 108.19710 * 179.97438 * 21 20 17 23 23 N 1.40083 * 108.20722 * 0.02562 * 22 21 20 24 24 C 1.46504 * 126.03545 * 179.97438 * 23 22 21 25 25 C 1.52994 * 109.47277 * 305.02268 * 24 23 22 26 26 C 1.34947 * 107.92534 * 359.75105 * 23 22 21 27 27 H 1.09004 * 109.46925 * 65.39187 * 1 2 3 28 28 H 1.09004 * 109.46648 * 185.38698 * 1 2 3 29 29 H 1.08993 * 109.47621 * 305.38810 * 1 2 3 30 30 H 1.08998 * 109.47308 * 240.00174 * 2 1 3 31 31 H 1.08996 * 109.47162 * 119.99746 * 2 1 3 32 32 H 1.09003 * 109.47536 * 34.99992 * 4 3 2 33 33 H 1.09002 * 109.47152 * 155.00229 * 4 3 2 34 34 H 0.96996 * 120.00166 * 179.97438 * 8 7 5 35 35 H 0.96995 * 120.00451 * 246.10868 * 16 13 3 36 36 H 1.09003 * 109.46864 * 300.00006 * 19 17 16 37 37 H 1.08996 * 109.47543 * 59.99655 * 19 17 16 38 38 H 1.08998 * 109.47396 * 179.97438 * 19 17 16 39 39 H 1.07998 * 125.90423 * 359.95561 * 21 20 17 40 40 H 1.09005 * 109.47063 * 65.02363 * 24 23 22 41 41 H 1.09001 * 109.46643 * 185.01758 * 24 23 22 42 42 H 1.08997 * 109.46999 * 180.02562 * 25 24 23 43 43 H 1.09005 * 109.47152 * 300.00041 * 25 24 23 44 44 H 1.08997 * 109.47021 * 59.99930 * 25 24 23 45 45 H 1.07995 * 126.12560 * 180.24096 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 1.7545 2.2514 -1.1486 5 6 2.8117 2.0304 -2.1996 6 1 3.6009 1.3131 -2.0291 7 6 2.7707 2.7431 -3.3792 8 7 1.8094 3.6161 -3.5870 9 14 4.0808 2.4686 -4.6822 10 1 3.6417 1.3925 -5.6065 11 1 4.2885 3.7242 -5.4474 12 1 5.3535 2.0710 -4.0285 13 16 2.8684 1.9589 1.2985 14 8 2.3460 1.3015 2.4448 15 8 2.9002 3.3728 1.1604 16 7 4.4314 1.4375 1.1322 17 6 5.2541 1.9304 0.0247 18 1 4.6080 2.2705 -0.7846 19 6 6.1187 3.0954 0.5109 20 6 6.1423 0.8199 -0.4743 21 6 6.8067 -0.1216 0.3184 22 7 7.4767 -0.9209 -0.4716 23 7 7.2599 -0.5123 -1.7938 24 6 7.8259 -1.1362 -2.9925 25 6 9.3497 -1.1908 -2.8679 26 6 6.4337 0.5544 -1.7687 27 1 -0.3633 0.4280 -0.9344 28 1 -0.3633 -1.0232 0.0965 29 1 -0.3634 0.5951 0.8377 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.7744 2.0173 -1.5643 33 1 1.7736 3.2929 -0.8274 34 1 1.7808 4.1178 -4.4166 35 1 4.8022 0.8058 1.7680 36 1 5.4763 3.8987 0.8719 37 1 6.7648 2.7555 1.3202 38 1 6.7311 3.4619 -0.3129 39 1 6.7728 -0.1787 1.3963 40 1 7.4332 -2.1478 -3.0954 41 1 7.5537 -0.5498 -3.8701 42 1 9.7708 -1.6545 -3.7599 43 1 9.7424 -0.1791 -2.7650 44 1 9.6217 -1.7771 -1.9902 45 1 6.0719 1.0998 -2.6277 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452004368.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:32:59 Heat of formation + Delta-G solvation = -5.821958 kcal Electronic energy + Delta-G solvation = -28294.805446 eV Core-core repulsion = 24475.884823 eV Total energy + Delta-G solvation = -3818.920623 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.151 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.05239 -36.66464 -36.16656 -35.86914 -35.11137 -34.04030 -32.73973 -30.46661 -29.83015 -29.72471 -28.00574 -26.74197 -23.91767 -23.29109 -22.70274 -21.48027 -20.68468 -19.73652 -18.62135 -17.31367 -17.01372 -16.77039 -16.23564 -15.58828 -15.35747 -14.89780 -14.47808 -14.26278 -14.02802 -13.80409 -13.60135 -13.34241 -12.98268 -12.81755 -12.55521 -12.48093 -12.21815 -12.06209 -11.95925 -11.85756 -11.67781 -11.50065 -11.39245 -11.24408 -11.18824 -11.10452 -10.92550 -10.85782 -10.56346 -10.39775 -10.13592 -10.03762 -9.68677 -9.22756 -9.08957 -8.54693 -8.15953 -8.00772 -6.16687 -4.22081 1.38095 2.10302 2.62938 2.99832 3.07924 3.15565 3.23211 3.65841 4.24123 4.27288 4.47324 4.83217 4.99209 5.10095 5.14155 5.18409 5.21058 5.37017 5.45314 5.50408 5.57775 5.73406 5.79974 5.84136 5.84326 5.87957 5.98943 6.01352 6.13212 6.19003 6.31304 6.40511 6.63326 6.66950 6.72795 6.80477 6.91567 7.20250 7.36446 7.39730 7.52813 7.70990 7.82727 7.88593 8.12969 8.81800 9.41337 10.91475 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.009802 B = 0.006169 C = 0.004668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2855.899098 B = 4537.903006 C = 5996.955879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.131 3.869 3 N -0.993 5.993 4 C 0.242 3.758 5 C -0.540 4.540 6 H 0.068 0.932 7 C 0.066 3.934 8 N -0.885 5.885 9 Si 0.891 3.109 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.272 1.272 13 S 2.784 3.216 14 O -1.005 7.005 15 O -0.975 6.975 16 N -1.121 6.121 17 C 0.213 3.787 18 H 0.129 0.871 19 C -0.159 4.159 20 C -0.229 4.229 21 C 0.054 3.946 22 N -0.302 5.302 23 N -0.375 5.375 24 C 0.130 3.870 25 C -0.163 4.163 26 C 0.065 3.935 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.039 0.961 33 H 0.052 0.948 34 H 0.264 0.736 35 H 0.403 0.597 36 H 0.069 0.931 37 H 0.050 0.950 38 H 0.060 0.940 39 H 0.176 0.824 40 H 0.082 0.918 41 H 0.094 0.906 42 H 0.072 0.928 43 H 0.059 0.941 44 H 0.069 0.931 45 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.461 -7.864 2.212 12.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.004 3.996 3 N -0.834 5.834 4 C 0.120 3.880 5 C -0.579 4.579 6 H 0.086 0.914 7 C -0.138 4.138 8 N -0.523 5.523 9 Si 0.720 3.280 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.198 1.198 13 S 2.792 3.208 14 O -0.989 6.989 15 O -0.959 6.959 16 N -0.878 5.878 17 C 0.105 3.895 18 H 0.146 0.854 19 C -0.218 4.218 20 C -0.242 4.242 21 C -0.132 4.132 22 N -0.124 5.124 23 N -0.158 5.158 24 C 0.009 3.991 25 C -0.221 4.221 26 C -0.081 4.081 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.235 0.765 36 H 0.088 0.912 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.193 0.807 40 H 0.100 0.900 41 H 0.112 0.888 42 H 0.090 0.910 43 H 0.079 0.921 44 H 0.088 0.912 45 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 9.790 -8.108 2.436 12.943 hybrid contribution 0.453 -0.007 -0.994 1.092 sum 10.243 -8.116 1.442 13.148 Atomic orbital electron populations 1.22079 0.96509 1.00966 1.02625 1.20936 0.94405 0.82874 1.01350 1.57704 1.68612 1.20612 1.36513 1.19202 0.97516 0.89444 0.81847 1.21603 1.11820 1.23078 1.01446 0.91389 1.24955 0.95791 0.94967 0.98080 1.69920 1.31980 1.24608 1.25750 0.86712 0.81594 0.77785 0.81954 1.20701 1.21067 1.19766 1.01784 0.72604 0.73681 0.72724 1.93543 1.78408 1.77332 1.49586 1.93581 1.86368 1.29436 1.86491 1.56090 1.31670 1.61303 1.38694 1.19330 0.91539 0.89664 0.88944 0.85380 1.22233 1.00008 0.98406 1.01146 1.20169 1.08335 1.03589 0.92096 1.23579 0.96155 0.93843 0.99666 1.77207 1.24650 1.23601 0.86903 1.48585 1.37623 1.24053 1.05577 1.21639 0.94759 0.99077 0.83620 1.22038 0.93943 1.03022 1.03058 1.22780 0.94549 0.90935 0.99848 0.91743 0.92666 0.92794 0.91436 0.91653 0.94256 0.92958 0.92557 0.76527 0.91189 0.93086 0.92091 0.80654 0.89960 0.88784 0.90958 0.92143 0.91200 0.80340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.61 9.87 37.16 0.37 -2.24 16 2 C 0.13 2.27 6.46 -4.04 -0.03 2.25 16 3 N -0.99 -19.95 2.93 -115.66 -0.34 -20.29 16 4 C 0.24 5.73 5.28 -5.20 -0.03 5.71 16 5 C -0.54 -13.04 7.57 -34.44 -0.26 -13.30 16 6 H 0.07 1.55 6.69 -52.49 -0.35 1.20 16 7 C 0.07 1.65 5.46 -17.82 -0.10 1.55 16 8 N -0.88 -24.04 13.29 55.43 0.74 -23.30 16 9 Si 0.89 18.75 29.54 -169.99 -5.02 13.73 16 10 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 11 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 12 H -0.27 -5.07 5.03 56.52 0.28 -4.79 16 13 S 2.78 54.63 5.98 -107.50 -0.64 53.99 16 14 O -1.00 -20.67 17.09 -57.17 -0.98 -21.65 16 15 O -0.98 -22.23 15.98 -57.17 -0.91 -23.14 16 16 N -1.12 -18.17 5.50 -5.88 -0.03 -18.20 16 17 C 0.21 3.58 3.15 -69.08 -0.22 3.36 16 18 H 0.13 2.53 4.67 -51.93 -0.24 2.29 16 19 C -0.16 -2.45 9.50 37.16 0.35 -2.10 16 20 C -0.23 -3.59 5.09 -105.05 -0.53 -4.13 16 21 C 0.05 0.78 11.30 -17.36 -0.20 0.58 16 22 N -0.30 -4.58 12.42 30.62 0.38 -4.20 16 23 N -0.38 -5.36 3.68 -61.37 -0.23 -5.59 16 24 C 0.13 1.37 7.23 -4.04 -0.03 1.34 16 25 C -0.16 -1.46 10.10 37.15 0.38 -1.09 16 26 C 0.06 1.02 11.36 -17.23 -0.20 0.82 16 27 H 0.06 1.09 7.08 -51.93 -0.37 0.72 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.07 1.04 7.27 -51.93 -0.38 0.66 16 32 H 0.04 0.97 6.82 -51.93 -0.35 0.62 16 33 H 0.05 1.38 6.87 -51.93 -0.36 1.02 16 34 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 35 H 0.40 5.43 7.91 -34.47 -0.27 5.16 16 36 H 0.07 1.17 7.83 -51.93 -0.41 0.76 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.18 2.02 7.68 -52.49 -0.40 1.62 16 40 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.09 0.86 8.07 -51.93 -0.42 0.44 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.18 2.86 5.98 -52.49 -0.31 2.54 16 LS Contribution 376.47 15.07 5.67 5.67 Total: -1.00 -30.92 376.47 -8.77 -39.70 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -6.92 Total: 10.52 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -0.49 Total: -7.24 kcal Atomic # 7 Polarization: -72.10 SS G_CDS: 0.52 Total: -71.58 kcal Atomic # 8 Polarization: -42.90 SS G_CDS: -1.89 Total: -44.79 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.02 Total: 13.73 kcal Atomic # 16 Polarization: 54.63 SS G_CDS: -0.64 Total: 53.99 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.92 -8.77 -39.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452004368.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.877 kcal (2) G-P(sol) polarization free energy of solvation -30.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds