Wall clock time and date at job start Sat Apr 11 2020 02:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35901 * 117.00043 * 2 1 4 4 C 1.38711 * 120.04024 * 0.02562 * 3 2 1 5 5 C 1.38343 * 119.91720 * 179.97438 * 4 3 2 6 6 F 1.35105 * 119.99792 * 179.97438 * 5 4 3 7 7 C 1.38521 * 120.00484 * 0.02562 * 5 4 3 8 8 C 1.38203 * 120.08546 * 359.68176 * 7 5 4 9 9 C 1.38180 * 120.07947 * 0.59070 * 8 7 5 10 10 C 1.50698 * 120.00326 * 179.70022 * 9 8 7 11 11 N 1.46903 * 109.47264 * 259.73399 * 10 9 8 12 12 C 1.46894 * 110.99998 * 71.71649 * 11 10 9 13 13 C 1.50706 * 109.47227 * 63.37955 * 12 11 10 14 14 H 1.08004 * 119.99775 * 355.91269 * 13 12 11 15 15 C 1.37870 * 120.00146 * 175.91171 * 13 12 11 16 16 N 1.31517 * 120.00115 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00020 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47043 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47268 * 120.00547 * 17 15 13 20 20 H 1.48509 * 109.47045 * 240.00069 * 17 15 13 21 21 C 1.46899 * 110.99578 * 195.67459 * 11 10 9 22 22 C 1.50702 * 109.47094 * 169.99738 * 21 11 10 23 23 C 1.38671 * 120.41739 * 89.99603 * 22 21 11 24 24 C 1.38634 * 118.42182 * 179.97438 * 23 22 21 25 25 C 1.38229 * 119.15719 * 0.24666 * 24 23 22 26 26 N 1.31850 * 120.76427 * 359.50670 * 25 24 23 27 27 C 1.31886 * 121.72751 * 0.48796 * 26 25 24 28 28 H 1.09001 * 109.47498 * 60.00101 * 1 2 3 29 29 H 1.08998 * 109.47453 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47429 * 300.00089 * 1 2 3 31 31 H 1.07997 * 120.04094 * 359.95939 * 4 3 2 32 32 H 1.08005 * 119.95606 * 179.97438 * 7 5 4 33 33 H 1.07996 * 119.96151 * 180.29861 * 8 7 5 34 34 H 1.09001 * 109.47117 * 139.72732 * 10 9 8 35 35 H 1.09003 * 109.46768 * 19.73146 * 10 9 8 36 36 H 1.09004 * 109.46725 * 183.37203 * 12 11 10 37 37 H 1.08993 * 109.47801 * 303.37899 * 12 11 10 38 38 H 0.96995 * 120.00332 * 179.97438 * 16 15 13 39 39 H 1.08996 * 109.47532 * 49.99523 * 21 11 10 40 40 H 1.09003 * 109.46868 * 289.99590 * 21 11 10 41 41 H 1.07999 * 120.79446 * 359.95806 * 23 22 21 42 42 H 1.07997 * 120.41931 * 179.97438 * 24 23 22 43 43 H 1.08003 * 119.61524 * 179.74680 * 25 24 23 44 44 H 1.08001 * 119.61915 * 179.75426 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3747 0.0005 5 6 1.9220 3.6060 0.0011 6 9 1.1886 4.7407 0.0011 7 6 3.3055 3.6757 0.0005 8 6 4.0575 2.5162 0.0061 9 6 3.4312 1.2845 -0.0001 10 6 4.2530 0.0212 -0.0008 11 7 4.3184 -0.5196 -1.3651 12 6 5.1746 0.3124 -2.2208 13 6 6.5872 0.2852 -1.6962 14 1 6.8124 -0.2381 -0.7786 15 6 7.5918 0.9283 -2.3875 16 7 7.3175 1.5659 -3.5046 17 14 9.3425 0.8952 -1.7369 18 1 9.3858 0.1185 -0.4719 19 1 10.2318 0.2573 -2.7407 20 1 9.8017 2.2840 -1.4804 21 6 4.7789 -1.9146 -1.3568 22 6 4.6010 -2.5105 -2.7295 23 6 5.6181 -2.4267 -3.6684 24 6 5.4104 -2.9897 -4.9181 25 6 4.2030 -3.6068 -5.1865 26 7 3.2598 -3.6718 -4.2675 27 6 3.4227 -3.1477 -3.0683 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 0.2127 2.3198 0.0003 32 1 3.7971 4.6374 0.0005 33 1 5.1360 2.5728 0.0106 34 1 3.7913 -0.7129 0.6594 35 1 5.2606 0.2432 0.3507 36 1 5.1578 -0.0761 -3.2391 37 1 4.8054 1.3379 -2.2170 38 1 8.0242 2.0186 -3.9908 39 1 4.1955 -2.4855 -0.6344 40 1 5.8327 -1.9476 -1.0800 41 1 6.5498 -1.9344 -3.4318 42 1 6.1805 -2.9427 -5.6738 43 1 4.0317 -4.0442 -6.1591 44 1 2.6257 -3.2172 -2.3427 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231600921.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:33:42 Heat of formation + Delta-G solvation = -14.563668 kcal Electronic energy + Delta-G solvation = -28458.922047 eV Core-core repulsion = 24484.258442 eV Total energy + Delta-G solvation = -3974.663605 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.70295 -40.00297 -39.60415 -37.36839 -36.39282 -32.65567 -32.40029 -31.33674 -30.27969 -30.00130 -27.31774 -27.18299 -25.76492 -24.16547 -22.94172 -22.33164 -22.18187 -21.07936 -19.75759 -18.16541 -16.82506 -16.68703 -16.37903 -15.82285 -15.75839 -15.53821 -15.28469 -15.16147 -14.80565 -14.67186 -14.45954 -14.30030 -13.76260 -13.48434 -13.12354 -12.98596 -12.68548 -12.46982 -12.39583 -12.08237 -11.90472 -11.59853 -11.33674 -11.20614 -11.01715 -10.84271 -10.80876 -10.64762 -10.58422 -10.29560 -10.09860 -9.71920 -9.13481 -8.94994 -8.58936 -8.49259 -8.44861 -7.85689 -7.19783 -6.10144 -4.20618 1.41562 1.60829 1.66290 1.88554 3.18223 3.28611 3.30025 3.44395 3.86930 4.31479 4.33337 4.46918 4.91272 4.94896 5.08509 5.14730 5.18957 5.21558 5.25678 5.32488 5.34429 5.50571 5.54636 5.57969 5.67390 5.71224 5.86411 5.91733 6.03069 6.19032 6.24299 6.30282 6.38532 6.44060 6.51491 6.60400 6.76408 6.81176 6.99763 7.06586 7.19187 7.28288 7.49005 7.58578 7.84789 7.98736 8.20466 8.22353 8.45116 8.91529 9.46144 10.93493 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.008610 B = 0.005242 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3251.208829 B = 5339.782924 C = 7732.558031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.294 6.294 3 C 0.171 3.829 4 C -0.256 4.256 5 C 0.124 3.876 6 F -0.145 7.145 7 C -0.192 4.192 8 C -0.032 4.032 9 C -0.097 4.097 10 C 0.106 3.894 11 N -0.527 5.527 12 C 0.182 3.818 13 C -0.549 4.549 14 H 0.058 0.942 15 C 0.069 3.931 16 N -0.884 5.884 17 Si 0.880 3.120 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.102 3.898 22 C -0.106 4.106 23 C -0.048 4.048 24 C -0.179 4.179 25 C 0.081 3.919 26 N -0.498 5.498 27 C 0.105 3.895 28 H 0.053 0.947 29 H 0.098 0.902 30 H 0.050 0.950 31 H 0.133 0.867 32 H 0.131 0.869 33 H 0.145 0.855 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.036 0.964 37 H 0.031 0.969 38 H 0.262 0.738 39 H 0.064 0.936 40 H 0.056 0.944 41 H 0.145 0.855 42 H 0.126 0.874 43 H 0.145 0.855 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.992 -3.521 5.651 11.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.207 6.207 3 C 0.125 3.875 4 C -0.275 4.275 5 C 0.105 3.895 6 F -0.124 7.124 7 C -0.211 4.211 8 C -0.051 4.051 9 C -0.099 4.099 10 C -0.022 4.022 11 N -0.250 5.250 12 C 0.056 3.944 13 C -0.588 4.588 14 H 0.076 0.924 15 C -0.134 4.134 16 N -0.522 5.522 17 Si 0.708 3.292 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.026 4.026 22 C -0.109 4.109 23 C -0.074 4.074 24 C -0.199 4.199 25 C -0.076 4.076 26 N -0.207 5.207 27 C -0.052 4.052 28 H 0.072 0.928 29 H 0.116 0.884 30 H 0.069 0.931 31 H 0.151 0.849 32 H 0.149 0.851 33 H 0.163 0.837 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.055 0.945 37 H 0.049 0.951 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.162 0.838 42 H 0.144 0.856 43 H 0.162 0.838 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -10.135 -3.990 5.112 12.032 hybrid contribution 2.310 1.132 0.531 2.626 sum -7.825 -2.858 5.642 10.062 Atomic orbital electron populations 1.23033 0.79230 1.03715 1.00950 1.86197 1.20443 1.26041 1.87980 1.18495 0.91515 0.83439 0.94069 1.20991 1.00511 0.91366 1.14670 1.17343 0.89222 0.81214 1.01768 1.91458 1.77548 1.49426 1.93985 1.21004 0.91558 1.00229 1.08349 1.20959 1.00842 0.89948 0.93350 1.19294 0.90139 0.96267 1.04175 1.20708 0.97549 0.92249 0.91658 1.62546 1.52515 1.00940 1.09032 1.19848 0.88898 0.92756 0.92852 1.21723 0.94159 1.33986 1.08960 0.92417 1.24912 0.98522 0.95195 0.94758 1.69960 1.32888 1.33793 1.15542 0.86735 0.85493 0.77921 0.79072 1.19809 1.21005 1.20971 1.20803 0.99853 0.90264 0.91717 1.20796 0.94516 0.97893 0.97650 1.21816 1.00000 0.93436 0.92154 1.22093 0.99065 1.00625 0.98099 1.22542 0.89842 0.97206 0.98027 1.67605 1.32206 1.18721 1.02150 1.22522 0.95697 0.93892 0.93112 0.92799 0.88358 0.93143 0.84908 0.85072 0.83685 0.91611 0.92479 0.94549 0.95137 0.92840 0.91801 0.92642 0.83756 0.85574 0.83793 0.83464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.29 -4.37 9.73 -19.43 -0.19 -4.55 16 3 C 0.17 2.75 6.66 -39.23 -0.26 2.49 16 4 C -0.26 -3.80 9.02 -39.37 -0.35 -4.16 16 5 C 0.12 1.94 7.30 -39.44 -0.29 1.65 16 6 F -0.15 -2.23 17.27 2.25 0.04 -2.19 16 7 C -0.19 -3.04 10.02 -39.49 -0.40 -3.44 16 8 C -0.03 -0.55 8.75 -39.62 -0.35 -0.90 16 9 C -0.10 -1.69 4.79 -104.46 -0.50 -2.19 16 10 C 0.11 1.89 4.61 -4.98 -0.02 1.87 16 11 N -0.53 -10.34 4.65 -238.96 -1.11 -11.45 16 12 C 0.18 4.26 4.58 -4.98 -0.02 4.24 16 13 C -0.55 -13.30 6.97 -34.44 -0.24 -13.54 16 14 H 0.06 1.39 5.95 -52.48 -0.31 1.07 16 15 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 16 N -0.88 -24.09 13.29 55.43 0.74 -23.36 16 17 Si 0.88 19.79 29.54 -169.99 -5.02 14.77 16 18 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 21 C 0.10 1.82 4.93 -4.98 -0.02 1.80 16 22 C -0.11 -1.91 4.89 -104.48 -0.51 -2.42 16 23 C -0.05 -0.88 8.14 -39.28 -0.32 -1.20 16 24 C -0.18 -2.93 10.11 -39.44 -0.40 -3.33 16 25 C 0.08 1.28 11.18 -17.55 -0.20 1.08 16 26 N -0.50 -8.64 10.36 -13.25 -0.14 -8.77 16 27 C 0.10 1.79 10.86 -17.55 -0.19 1.60 16 28 H 0.05 0.54 7.66 -51.93 -0.40 0.15 16 29 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.44 7.66 -51.93 -0.40 0.05 16 31 H 0.13 1.66 6.30 -52.49 -0.33 1.32 16 32 H 0.13 1.84 8.06 -52.48 -0.42 1.42 16 33 H 0.15 2.54 8.03 -52.49 -0.42 2.12 16 34 H 0.07 1.07 7.52 -51.93 -0.39 0.68 16 35 H 0.06 1.08 6.20 -51.93 -0.32 0.75 16 36 H 0.04 0.95 6.14 -51.93 -0.32 0.63 16 37 H 0.03 0.79 6.69 -51.93 -0.35 0.44 16 38 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 39 H 0.06 1.00 7.82 -51.93 -0.41 0.59 16 40 H 0.06 1.06 6.36 -51.93 -0.33 0.73 16 41 H 0.14 2.94 7.69 -52.49 -0.40 2.54 16 42 H 0.13 1.79 8.06 -52.49 -0.42 1.37 16 43 H 0.14 1.81 8.06 -52.48 -0.42 1.39 16 44 H 0.15 2.23 8.06 -52.49 -0.42 1.81 16 LS Contribution 366.95 15.07 5.53 5.53 Total: -1.00 -28.39 366.95 -8.96 -37.35 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -5.63 Total: 6.21 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: -3.18 Total: -13.53 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: -0.51 Total: -43.58 kcal Atomic # 8 Polarization: -4.37 SS G_CDS: -0.19 Total: -4.55 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 0.04 Total: -2.19 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -28.39 -8.96 -37.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231600921.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.782 kcal (2) G-P(sol) polarization free energy of solvation -28.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds