Wall clock time and date at job start Sat Apr 11 2020 02:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39725 * 125.78054 * 2 1 4 4 C 1.36154 * 107.86065 * 180.02562 * 3 2 1 5 5 N 1.39361 * 126.26123 * 179.97438 * 4 3 2 6 6 C 1.34780 * 120.00152 * 0.03211 * 5 4 3 7 7 O 1.21572 * 120.00193 * 359.97438 * 6 5 4 8 8 C 1.47777 * 119.99667 * 179.97438 * 6 5 4 9 9 C 1.39473 * 120.00343 * 179.72411 * 8 6 5 10 10 N 1.32020 * 119.98118 * 179.75695 * 9 8 6 11 11 C 1.32797 * 119.98828 * 0.51298 * 10 9 8 12 12 N 1.38415 * 119.99221 * 179.70890 * 11 10 9 13 13 C 1.46495 * 119.99911 * 185.02507 * 12 11 10 14 14 C 1.46501 * 120.00000 * 5.03160 * 12 11 10 15 15 C 1.39841 * 120.01297 * 359.74021 * 11 10 9 16 16 N 1.31489 * 120.02122 * 359.97438 * 15 11 10 17 17 N 1.35805 * 107.47168 * 0.02562 * 4 3 2 18 18 C 1.46501 * 126.09680 * 179.97438 * 17 4 3 19 19 C 1.50698 * 109.46943 * 270.02493 * 18 17 4 20 20 H 1.08003 * 120.00367 * 359.97438 * 19 18 17 21 21 C 1.37875 * 120.00202 * 179.97438 * 19 18 17 22 22 N 1.31524 * 119.99753 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00405 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46908 * 59.99893 * 23 21 19 25 25 H 1.48500 * 109.47097 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.46848 * 300.00001 * 23 21 19 27 27 N 1.30835 * 125.77714 * 180.02562 * 2 1 3 28 28 H 1.09004 * 109.46944 * 269.97277 * 1 2 3 29 29 H 1.08995 * 109.46996 * 29.97102 * 1 2 3 30 30 H 1.09004 * 109.47058 * 149.97107 * 1 2 3 31 31 H 1.08005 * 126.06928 * 0.06814 * 3 2 1 32 32 H 0.97004 * 120.00171 * 180.02562 * 5 4 3 33 33 H 1.08000 * 120.01474 * 359.97438 * 9 8 6 34 34 H 1.09003 * 109.47630 * 90.00535 * 13 12 11 35 35 H 1.09007 * 109.47087 * 210.00504 * 13 12 11 36 36 H 1.08997 * 109.47145 * 330.00279 * 13 12 11 37 37 H 1.09000 * 109.47265 * 59.99357 * 14 12 11 38 38 H 1.09005 * 109.47166 * 179.97438 * 14 12 11 39 39 H 1.09006 * 109.47032 * 299.99370 * 14 12 11 40 40 H 1.08000 * 119.98841 * 180.02562 * 15 11 10 41 41 H 1.09007 * 109.46955 * 30.02131 * 18 17 4 42 42 H 1.08992 * 109.47542 * 150.02203 * 18 17 4 43 43 H 0.96995 * 119.99523 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1335 0.0000 4 6 3.6194 0.7146 -0.0006 5 7 4.7495 1.5302 -0.0013 6 6 4.6129 2.8711 -0.0008 7 8 3.5039 3.3691 -0.0002 8 6 5.8112 3.7358 -0.0009 9 6 5.6700 5.1233 -0.0062 10 7 6.7409 5.8955 -0.0015 11 6 7.9520 5.3507 -0.0021 12 7 9.0748 6.1602 -0.0032 13 6 10.4079 5.5633 -0.1149 14 6 8.9299 7.6138 0.1074 15 6 8.0932 3.9594 -0.0021 16 7 7.0269 3.1900 -0.0011 17 7 3.6088 -0.6434 -0.0015 18 6 4.7858 -1.5157 -0.0029 19 6 5.1887 -1.8133 -1.4242 20 1 4.6243 -1.3949 -2.2445 21 6 6.2780 -2.6198 -1.6775 22 7 6.9656 -3.1290 -0.6787 23 14 6.7771 -2.9893 -3.4393 24 1 7.1002 -1.7199 -4.1388 25 1 7.9709 -3.8725 -3.4407 26 1 5.6572 -3.6688 -4.1388 27 7 2.2719 -1.0615 -0.0005 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5143 31 1 1.9875 2.1598 0.0010 32 1 5.6344 1.1329 -0.0020 33 1 4.6850 5.5661 -0.0106 34 1 10.6854 5.4878 -1.1664 35 1 11.1313 6.1893 0.4076 36 1 10.3992 4.5687 0.3308 37 1 8.4295 7.8588 1.0442 38 1 9.9153 8.0795 0.0895 39 1 8.3372 7.9846 -0.7289 40 1 9.0783 3.5168 -0.0021 41 1 5.6079 -1.0175 0.5111 42 1 4.5481 -2.4476 0.5100 43 1 7.7317 -3.6966 -0.8569 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543719721.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:33:46 Heat of formation + Delta-G solvation = 110.066909 kcal Electronic energy + Delta-G solvation = -27367.367530 eV Core-core repulsion = 23450.321026 eV Total energy + Delta-G solvation = -3917.046504 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.45167 -40.61828 -38.96431 -37.25952 -34.84873 -34.19883 -33.64595 -31.99023 -31.24441 -29.09508 -28.87770 -28.25043 -26.46909 -25.95259 -24.42560 -23.37776 -22.70309 -21.45178 -19.71418 -19.49285 -17.96656 -17.89499 -17.25621 -16.72250 -16.16661 -16.05323 -15.54169 -15.20694 -15.02450 -14.81566 -14.55430 -14.31014 -14.03864 -13.68275 -13.53106 -13.06648 -12.87565 -12.80884 -12.71508 -12.44841 -12.39271 -11.99883 -11.77256 -11.67739 -11.52067 -11.49825 -11.04417 -10.82480 -10.40597 -10.31625 -10.27667 -10.13955 -9.76706 -9.56279 -9.25900 -8.65014 -8.13906 -7.83234 -7.36458 -6.26592 -4.34450 0.44447 0.96372 2.31865 2.40229 2.84811 3.12649 3.23052 3.26395 3.31688 3.57502 3.79208 3.85646 3.98954 4.02677 4.14870 4.30419 4.58947 4.74649 4.78881 4.88938 4.98380 5.06815 5.16898 5.18920 5.35915 5.40352 5.42259 5.68751 5.86511 6.07685 6.21196 6.23362 6.25708 6.34834 6.47717 6.65685 6.71838 6.92341 7.10309 7.16029 7.53264 7.59770 7.65767 7.73344 7.86967 7.95562 8.34869 8.68199 8.77192 9.32435 10.80695 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.009406 B = 0.003702 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2976.032026 B = 7561.624060 C =10067.656811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.049 3.951 3 C -0.293 4.293 4 C 0.300 3.700 5 N -0.621 5.621 6 C 0.590 3.410 7 O -0.514 6.514 8 C -0.043 4.043 9 C 0.175 3.825 10 N -0.507 5.507 11 C 0.371 3.629 12 N -0.600 5.600 13 C 0.086 3.914 14 C 0.099 3.901 15 C -0.001 4.001 16 N -0.369 5.369 17 N -0.345 5.345 18 C 0.257 3.743 19 C -0.539 4.539 20 H 0.064 0.936 21 C 0.068 3.932 22 N -0.890 5.890 23 Si 0.906 3.094 24 H -0.275 1.275 25 H -0.284 1.284 26 H -0.274 1.274 27 N -0.283 5.283 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.162 0.838 32 H 0.425 0.575 33 H 0.184 0.816 34 H 0.061 0.939 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.061 0.939 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.174 0.826 41 H 0.045 0.955 42 H 0.057 0.943 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.017 19.945 2.883 21.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.116 4.116 3 C -0.325 4.325 4 C 0.078 3.922 5 N -0.267 5.267 6 C 0.375 3.625 7 O -0.388 6.388 8 C -0.184 4.184 9 C 0.013 3.987 10 N -0.229 5.229 11 C 0.131 3.869 12 N -0.312 5.312 13 C -0.057 4.057 14 C -0.044 4.044 15 C -0.174 4.174 16 N -0.085 5.085 17 N -0.131 5.131 18 C 0.139 3.861 19 C -0.578 4.578 20 H 0.082 0.918 21 C -0.136 4.136 22 N -0.528 5.528 23 Si 0.733 3.267 24 H -0.200 1.200 25 H -0.209 1.209 26 H -0.199 1.199 27 N -0.108 5.108 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.180 0.820 32 H 0.263 0.737 33 H 0.201 0.799 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.190 0.810 41 H 0.063 0.937 42 H 0.075 0.925 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.718 18.945 2.943 20.007 hybrid contribution 1.210 0.304 -0.991 1.594 sum 6.928 19.249 1.952 20.551 Atomic orbital electron populations 1.20016 0.87598 1.02420 1.02004 1.22008 0.96506 0.91022 1.02053 1.21270 0.89021 1.00464 1.21696 1.18024 0.87882 0.83368 1.02906 1.42501 1.08878 1.05177 1.70154 1.17315 0.87452 0.80933 0.76752 1.90722 1.24863 1.74019 1.49223 1.21437 0.91943 0.93524 1.11453 1.23488 0.97905 0.89497 0.87832 1.68164 0.97122 1.38400 1.19227 1.19631 0.87776 0.89603 0.89898 1.46230 1.03167 1.06180 1.75590 1.21936 0.81577 0.99818 1.02330 1.21658 1.02062 0.78195 1.02482 1.23238 0.98940 0.88821 1.06389 1.68180 0.97970 1.38846 1.03491 1.49507 1.06457 1.02063 1.55083 1.19624 0.77868 0.89665 0.98895 1.21304 1.13338 1.31785 0.91346 0.91783 1.24916 0.95647 0.94924 0.98100 1.69915 1.19156 1.32631 1.31076 0.86419 0.78047 0.78440 0.83816 1.20022 1.20925 1.19890 1.77325 0.86173 1.21851 1.25499 0.91406 0.91134 0.91542 0.82027 0.73656 0.79872 0.92011 0.90268 0.90358 0.92050 0.90710 0.91820 0.80964 0.93704 0.92550 0.92195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.94 10.44 36.01 0.38 -0.56 16 2 C 0.05 1.01 7.20 -82.46 -0.59 0.42 16 3 C -0.29 -6.20 9.58 -39.78 -0.38 -6.58 16 4 C 0.30 6.71 7.68 -152.76 -1.17 5.53 16 5 N -0.62 -12.23 5.40 -12.22 -0.07 -12.29 16 6 C 0.59 10.46 7.76 -12.36 -0.10 10.37 16 7 O -0.51 -9.61 13.46 5.30 0.07 -9.54 16 8 C -0.04 -0.64 6.74 -82.89 -0.56 -1.20 16 9 C 0.17 2.25 10.76 -17.01 -0.18 2.06 16 10 N -0.51 -6.15 9.71 -11.95 -0.12 -6.27 16 11 C 0.37 4.05 7.37 -154.98 -1.14 2.91 16 12 N -0.60 -4.68 3.37 -189.51 -0.64 -5.32 16 13 C 0.09 0.39 10.25 59.84 0.61 1.01 16 14 C 0.10 0.60 10.19 59.85 0.61 1.21 16 15 C 0.00 -0.01 10.42 -17.10 -0.18 -0.19 16 16 N -0.37 -5.40 9.69 -9.45 -0.09 -5.49 16 17 N -0.35 -8.45 3.62 -61.45 -0.22 -8.67 16 18 C 0.26 6.69 6.02 -5.19 -0.03 6.66 16 19 C -0.54 -15.00 9.39 -34.44 -0.32 -15.32 16 20 H 0.06 1.85 7.81 -52.48 -0.41 1.44 16 21 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 22 N -0.89 -24.88 13.29 55.43 0.74 -24.15 16 23 Si 0.91 21.22 29.54 -169.99 -5.02 16.20 16 24 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 27 N -0.28 -6.79 12.56 33.64 0.42 -6.37 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.16 3.27 5.83 -52.48 -0.31 2.96 16 32 H 0.43 8.30 7.33 -40.82 -0.30 8.01 16 33 H 0.18 2.06 7.63 -52.49 -0.40 1.66 16 34 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.08 0.20 7.92 -51.93 -0.41 -0.21 16 36 H 0.08 0.32 5.98 -51.93 -0.31 0.01 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.26 7.79 -51.93 -0.40 -0.15 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.17 1.47 6.02 -52.49 -0.32 1.15 16 41 H 0.05 1.15 7.52 -51.93 -0.39 0.76 16 42 H 0.06 1.56 8.14 -51.93 -0.42 1.14 16 43 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 370.37 15.07 5.58 5.58 Total: -1.00 -33.60 370.37 -7.85 -41.45 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -5.34 Total: 6.81 kcal Atomic # 6 Polarization: 11.23 SS G_CDS: -3.16 Total: 8.07 kcal Atomic # 7 Polarization: -68.59 SS G_CDS: 0.02 Total: -68.56 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.07 Total: -9.54 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.60 -7.85 -41.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543719721.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.513 kcal (2) G-P(sol) polarization free energy of solvation -33.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds