Wall clock time and date at job start Sat Apr 11 2020 02:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86796 * 119.99853 * 2 1 4 4 H 1.48503 * 109.47042 * 239.99926 * 3 2 1 5 5 H 1.48503 * 109.47353 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47251 * 119.99794 * 3 2 1 7 7 C 1.38808 * 119.99692 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99401 * 157.94818 * 7 2 1 9 9 N 1.36931 * 120.00483 * 337.95139 * 7 2 1 10 10 C 1.46495 * 120.00147 * 324.91890 * 9 7 2 11 11 C 1.53000 * 109.47332 * 269.99923 * 10 9 7 12 12 C 1.52998 * 109.47137 * 179.97438 * 11 10 9 13 13 N 1.46501 * 109.47139 * 180.02562 * 12 11 10 14 14 C 1.34774 * 120.00270 * 180.02562 * 13 12 11 15 15 O 1.21585 * 119.99714 * 0.02562 * 14 13 12 16 16 C 1.47541 * 120.00189 * 179.97438 * 14 13 12 17 17 C 1.39527 * 120.05062 * 359.72383 * 16 14 13 18 18 C 1.37784 * 120.18905 * 179.84428 * 17 16 14 19 19 C 1.38645 * 119.96907 * 0.40125 * 18 17 16 20 20 C 1.37660 * 120.32458 * 359.65317 * 19 18 17 21 21 C 1.38884 * 120.87010 * 0.32865 * 20 19 18 22 22 O 1.35858 * 111.31347 * 179.29804 * 21 20 19 23 23 C 1.43772 * 109.29609 * 18.84411 * 22 21 20 24 24 C 1.51673 * 132.13811 * 180.57046 * 20 19 18 25 25 C 1.46504 * 119.99914 * 144.91998 * 9 7 2 26 26 C 1.52996 * 117.50076 * 3.23618 * 25 9 7 27 27 C 1.52996 * 117.49895 * 294.57820 * 25 9 7 28 28 H 0.96995 * 119.99929 * 355.76794 * 1 2 3 29 29 H 1.08998 * 109.47179 * 150.00148 * 10 9 7 30 30 H 1.09001 * 109.46974 * 29.99795 * 10 9 7 31 31 H 1.08993 * 109.47514 * 300.00207 * 11 10 9 32 32 H 1.09007 * 109.47039 * 59.99836 * 11 10 9 33 33 H 1.09001 * 109.47482 * 300.00064 * 12 11 10 34 34 H 1.08998 * 109.46865 * 60.00536 * 12 11 10 35 35 H 0.97003 * 120.00132 * 0.02562 * 13 12 11 36 36 H 1.08001 * 119.90870 * 0.09977 * 17 16 14 37 37 H 1.07990 * 120.01858 * 180.10702 * 18 17 16 38 38 H 1.08001 * 119.84333 * 179.67846 * 19 18 17 39 39 H 1.09001 * 110.75214 * 90.66594 * 23 22 21 40 40 H 1.08992 * 110.75281 * 213.84107 * 23 22 21 41 41 H 1.08999 * 110.94623 * 46.13861 * 24 20 19 42 42 H 1.09004 * 110.97494 * 282.44523 * 24 20 19 43 43 H 1.09001 * 115.55137 * 148.90851 * 25 9 7 44 44 H 1.09001 * 117.50044 * 0.02562 * 26 25 9 45 45 H 1.09001 * 117.49995 * 145.02011 * 26 25 9 46 46 H 1.09000 * 117.49966 * 214.98355 * 27 25 9 47 47 H 1.09000 * 117.49907 * 359.97266 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0310 -1.2365 -0.3506 9 7 1.4007 -2.3445 0.4462 10 6 0.4455 -2.2803 1.5550 11 6 1.1884 -2.4656 2.8796 12 6 0.1908 -2.3979 4.0377 13 7 0.9022 -2.5748 5.3061 14 6 0.2218 -2.5521 6.4692 15 8 -0.9825 -2.3852 6.4659 16 6 0.9383 -2.7308 7.7466 17 6 2.3194 -2.9291 7.7513 18 6 2.9917 -3.0931 8.9427 19 6 2.2941 -3.0695 10.1406 20 6 0.9313 -2.8756 10.1475 21 6 0.2294 -2.7073 8.9609 22 8 -1.0998 -2.5468 9.1919 23 6 -1.3009 -2.1649 10.5633 24 6 -0.0789 -2.7917 11.2758 25 6 1.7039 -3.6309 -0.1859 26 6 2.7655 -3.6440 -1.2875 27 6 1.2875 -3.8159 -1.6464 28 1 -0.4850 0.8377 0.0620 29 1 -0.2969 -3.0702 1.4412 30 1 -0.0521 -1.3105 1.5501 31 1 1.6860 -3.4353 2.8845 32 1 1.9308 -1.6757 2.9934 33 1 -0.3065 -1.4280 4.0327 34 1 -0.5518 -3.1876 3.9241 35 1 1.8630 -2.7083 5.3088 36 1 2.8636 -2.9501 6.8186 37 1 4.0609 -3.2447 8.9432 38 1 2.8225 -3.2034 11.0730 39 1 -1.2938 -1.0798 10.6671 40 1 -2.2316 -2.5819 10.9478 41 1 0.2816 -2.1432 12.0742 42 1 -0.3182 -3.7834 11.6598 43 1 1.6464 -4.5011 0.4680 44 1 3.2388 -2.6955 -1.5418 45 1 3.4062 -4.5229 -1.3586 46 1 0.9564 -4.8079 -1.9536 47 1 0.7876 -2.9807 -2.1369 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752277832.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:32:39 Heat of formation + Delta-G solvation = 7.652849 kcal Electronic energy + Delta-G solvation = -27403.773080 eV Core-core repulsion = 23553.533161 eV Total energy + Delta-G solvation = -3850.239919 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.45476 -39.32654 -37.48756 -37.10243 -35.19437 -33.57937 -33.02163 -31.57157 -30.53850 -29.72035 -29.01773 -25.56903 -24.33732 -23.58826 -22.59683 -22.22695 -21.41891 -20.94178 -20.18177 -19.57940 -17.82131 -17.33775 -16.79686 -16.39146 -16.32271 -15.59383 -15.25144 -15.18974 -15.09254 -14.57302 -14.12421 -14.00300 -13.73447 -13.52026 -13.39661 -13.19424 -12.70887 -12.59133 -12.19358 -12.12778 -12.05702 -11.90577 -11.55173 -11.43417 -11.16535 -10.98594 -10.78426 -10.73670 -10.65230 -10.19486 -10.06222 -9.71593 -9.60126 -9.54506 -9.25150 -9.24167 -8.76287 -8.46083 -8.41323 -6.57645 -5.78563 -3.39765 0.63466 1.01984 2.82468 3.02407 3.32742 3.36667 3.42628 3.43231 3.67491 4.03180 4.21986 4.44244 4.48844 4.66015 4.70706 4.84711 4.93728 4.98244 5.09969 5.15391 5.20163 5.33140 5.33360 5.36757 5.57979 5.70452 5.78165 5.88437 5.92202 5.98681 6.05386 6.07513 6.14519 6.26352 6.28710 6.42844 6.44219 6.50312 6.66953 6.71823 6.81873 6.88857 7.04509 7.12983 7.23456 7.68642 7.71860 7.79651 8.42312 8.47154 9.14802 9.78097 10.33832 11.16949 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.015731 B = 0.002418 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.517136 B =11577.632806 C =11956.061140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.011 3.989 3 Si 0.896 3.104 4 H -0.281 1.281 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.259 4.259 8 H 0.065 0.935 9 N -0.552 5.552 10 C 0.149 3.851 11 C -0.145 4.145 12 C 0.122 3.878 13 N -0.723 5.723 14 C 0.551 3.449 15 O -0.528 6.528 16 C -0.153 4.153 17 C -0.053 4.053 18 C -0.157 4.157 19 C -0.048 4.048 20 C -0.190 4.190 21 C 0.168 3.832 22 O -0.275 6.275 23 C 0.044 3.956 24 C -0.108 4.108 25 C 0.121 3.879 26 C -0.197 4.197 27 C -0.222 4.222 28 H 0.256 0.744 29 H 0.028 0.972 30 H 0.103 0.897 31 H 0.049 0.951 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.396 0.604 36 H 0.137 0.863 37 H 0.135 0.865 38 H 0.128 0.872 39 H 0.079 0.921 40 H 0.109 0.891 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.086 0.914 44 H 0.096 0.904 45 H 0.073 0.927 46 H 0.069 0.931 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.329 -7.151 22.292 23.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.190 4.190 3 Si 0.725 3.275 4 H -0.207 1.207 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.388 4.388 8 H 0.083 0.917 9 N -0.268 5.268 10 C 0.022 3.978 11 C -0.185 4.185 12 C -0.001 4.001 13 N -0.375 5.375 14 C 0.338 3.662 15 O -0.405 6.405 16 C -0.157 4.157 17 C -0.071 4.071 18 C -0.175 4.175 19 C -0.066 4.066 20 C -0.191 4.191 21 C 0.120 3.880 22 O -0.187 6.187 23 C -0.031 4.031 24 C -0.145 4.145 25 C 0.012 3.988 26 C -0.235 4.235 27 C -0.264 4.264 28 H 0.066 0.934 29 H 0.047 0.953 30 H 0.120 0.880 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.231 0.769 36 H 0.154 0.846 37 H 0.153 0.847 38 H 0.146 0.854 39 H 0.097 0.903 40 H 0.127 0.873 41 H 0.111 0.889 42 H 0.110 0.890 43 H 0.104 0.896 44 H 0.115 0.885 45 H 0.092 0.908 46 H 0.087 0.913 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.081 -6.870 22.059 23.308 hybrid contribution 1.047 0.801 0.085 1.321 sum 4.127 -6.069 22.144 23.329 Atomic orbital electron populations 1.70033 1.05481 1.26240 1.50658 1.25127 0.94971 0.98727 1.00133 0.86484 0.79245 0.83509 0.78267 1.20737 1.21562 1.20885 1.19015 0.94349 0.85550 1.39923 0.91711 1.43402 1.49119 1.01382 1.32901 1.20857 0.90446 1.03350 0.83109 1.22441 0.98855 1.01233 0.95997 1.21459 0.95514 1.01864 0.81260 1.46071 1.11458 1.73642 1.06290 1.18066 0.87145 0.77538 0.83490 1.90823 1.13772 1.48623 1.87264 1.19375 0.93268 1.11651 0.91447 1.21145 0.91729 0.95068 0.99179 1.20966 1.00399 1.04536 0.91593 1.20459 0.91752 0.95702 0.98671 1.20809 0.95168 1.08680 0.94433 1.19483 0.83642 0.91761 0.93095 1.87032 1.19702 1.82481 1.29487 1.23947 0.99367 1.00569 0.79187 1.21809 0.92962 1.02802 0.96934 1.21218 1.00294 0.90238 0.87055 1.23030 0.91931 1.01784 1.06781 1.23363 0.97329 1.00619 1.05043 0.93418 0.95341 0.87986 0.93183 0.91548 0.91379 0.91854 0.76891 0.84561 0.84734 0.85386 0.90272 0.87314 0.88886 0.89001 0.89628 0.88520 0.90835 0.91269 0.89038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.89 11.33 55.49 0.63 -24.26 16 2 C 0.01 0.29 4.96 -17.43 -0.09 0.21 16 3 Si 0.90 21.20 29.61 -169.99 -5.03 16.17 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.26 -6.80 8.63 -15.06 -0.13 -6.93 16 8 H 0.07 1.70 6.55 -52.48 -0.34 1.36 16 9 N -0.55 -13.28 2.78 -165.67 -0.46 -13.74 16 10 C 0.15 3.35 5.34 -4.04 -0.02 3.33 16 11 C -0.14 -2.66 5.65 -26.73 -0.15 -2.81 16 12 C 0.12 2.11 5.67 -4.04 -0.02 2.09 16 13 N -0.72 -10.84 5.50 -61.35 -0.34 -11.18 16 14 C 0.55 9.20 7.76 -12.47 -0.10 9.11 16 15 O -0.53 -10.94 15.86 -10.30 -0.16 -11.10 16 16 C -0.15 -2.10 5.89 -104.72 -0.62 -2.72 16 17 C -0.05 -0.53 9.51 -39.27 -0.37 -0.91 16 18 C -0.16 -1.29 10.05 -39.60 -0.40 -1.69 16 19 C -0.05 -0.39 10.02 -39.64 -0.40 -0.78 16 20 C -0.19 -1.89 6.27 -104.11 -0.65 -2.54 16 21 C 0.17 2.26 6.73 -38.44 -0.26 2.00 16 22 O -0.28 -3.91 10.12 -34.88 -0.35 -4.26 16 23 C 0.04 0.38 8.01 38.06 0.30 0.68 16 24 C -0.11 -0.75 7.12 -26.50 -0.19 -0.94 16 25 C 0.12 2.56 6.56 -67.93 -0.45 2.11 16 26 C -0.20 -3.86 9.80 -26.70 -0.26 -4.13 16 27 C -0.22 -4.56 10.36 -26.70 -0.28 -4.84 16 28 H 0.26 7.03 8.32 -40.82 -0.34 6.69 16 29 H 0.03 0.62 8.07 -51.93 -0.42 0.20 16 30 H 0.10 2.62 5.36 -51.93 -0.28 2.35 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 33 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.40 4.77 6.48 -40.82 -0.26 4.50 16 36 H 0.14 1.09 6.37 -52.49 -0.33 0.75 16 37 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 38 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 44 H 0.10 2.07 6.37 -51.93 -0.33 1.73 16 45 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 46 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 47 H 0.09 2.15 8.14 -51.93 -0.42 1.72 16 LS Contribution 386.21 15.07 5.82 5.82 Total: -1.00 -33.15 386.21 -11.00 -44.15 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -7.03 Total: 7.15 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: -4.07 Total: -8.75 kcal Atomic # 7 Polarization: -49.01 SS G_CDS: -0.17 Total: -49.18 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: -0.52 Total: -15.36 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.15 -11.00 -44.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752277832.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.800 kcal (2) G-P(sol) polarization free energy of solvation -33.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds