Wall clock time and date at job start Sat Apr 11 2020 02:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31502 * 1 3 3 Si 1.86795 * 120.00127 * 2 1 4 4 H 1.48499 * 109.47308 * 240.00179 * 3 2 1 5 5 H 1.48503 * 109.47138 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47194 * 120.00095 * 3 2 1 7 7 C 1.38723 * 119.99984 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00058 * 180.02562 * 7 2 1 9 9 O 1.34783 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.35563 * 117.00113 * 185.06275 * 9 7 2 11 11 C 1.39181 * 119.89894 * 354.44630 * 10 9 7 12 12 C 1.37596 * 120.10236 * 180.02562 * 11 10 9 13 13 C 1.40026 * 119.89614 * 359.97438 * 12 11 10 14 14 C 1.46969 * 120.09725 * 180.02562 * 13 12 11 15 15 C 1.35017 * 119.99831 * 180.02562 * 14 13 12 16 16 C 1.46250 * 119.99927 * 179.97438 * 15 14 13 17 17 O 1.21722 * 120.00300 * 0.02562 * 16 15 14 18 18 N 1.34787 * 120.00032 * 179.97438 * 16 15 14 19 19 C 1.46497 * 120.00090 * 179.97438 * 18 16 15 20 20 C 1.52996 * 109.47010 * 179.97438 * 19 18 16 21 21 C 1.53001 * 109.47214 * 180.02562 * 20 19 18 22 22 H 1.08999 * 110.64341 * 305.70165 * 21 20 19 23 23 C 1.54594 * 110.72844 * 182.55176 * 21 20 19 24 24 C 1.53994 * 105.14108 * 219.50692 * 23 21 20 25 25 N 1.47900 * 107.05715 * 358.77082 * 24 23 21 26 26 C 1.49008 * 105.87313 * 25.33537 * 25 24 23 27 27 C 1.40020 * 119.80225 * 0.27968 * 13 12 11 28 28 C 1.37601 * 119.89234 * 359.41907 * 27 13 12 29 29 H 0.97004 * 120.00166 * 359.97438 * 1 2 3 30 30 H 1.08001 * 119.95134 * 0.02562 * 11 10 9 31 31 H 1.08000 * 120.05084 * 180.02562 * 12 11 10 32 32 H 1.07996 * 120.00161 * 359.97438 * 14 13 12 33 33 H 1.08003 * 120.00217 * 0.02562 * 15 14 13 34 34 H 0.97000 * 119.99676 * 359.97438 * 18 16 15 35 35 H 1.09007 * 109.46660 * 60.00082 * 19 18 16 36 36 H 1.08994 * 109.47472 * 300.00545 * 19 18 16 37 37 H 1.08996 * 109.47339 * 60.00008 * 20 19 18 38 38 H 1.09005 * 109.47342 * 299.99845 * 20 19 18 39 39 H 1.09009 * 110.30534 * 338.42150 * 23 21 20 40 40 H 1.09004 * 110.31025 * 100.48475 * 23 21 20 41 41 H 1.08997 * 109.91801 * 118.12260 * 24 23 21 42 42 H 1.09003 * 109.91259 * 239.42016 * 24 23 21 43 43 H 1.00900 * 111.00128 * 264.82087 * 25 24 23 44 44 H 1.08999 * 110.86467 * 202.42533 * 26 25 24 45 45 H 1.08998 * 110.67986 * 79.14685 * 26 25 24 46 46 H 1.07997 * 120.05458 * 179.72296 * 27 13 12 47 47 H 1.08000 * 119.94984 * 180.31205 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6963 1.2125 7 6 2.0086 -1.2014 -0.0005 8 1 3.0886 -1.2014 -0.0001 9 8 1.3347 -2.3686 -0.0005 10 6 2.0690 -3.5032 0.1055 11 6 3.4590 -3.4339 0.0913 12 6 4.2084 -4.5830 0.1982 13 6 3.5704 -5.8233 0.3218 14 6 4.3665 -7.0533 0.4368 15 6 3.7493 -8.2483 0.5554 16 6 4.5415 -9.4724 0.6693 17 8 5.7573 -9.4139 0.6576 18 7 3.9254 -10.6653 0.7882 19 6 4.7189 -11.8915 0.9017 20 6 3.7826 -13.0953 1.0243 21 6 4.6113 -14.3759 1.1435 22 1 5.3147 -14.4570 0.3148 23 6 3.6930 -15.6181 1.2050 24 6 4.3465 -16.5504 2.2420 25 7 5.5790 -15.8810 2.7113 26 6 5.3561 -14.4227 2.5013 27 6 2.1718 -5.8887 0.3303 28 6 1.4306 -4.7338 0.2291 29 1 -0.4850 0.8401 0.0004 30 1 3.9502 -2.4768 -0.0037 31 1 5.2869 -4.5282 0.1875 32 1 5.4452 -7.0015 0.4256 33 1 2.6706 -8.3003 0.5654 34 1 2.9565 -10.7118 0.7987 35 1 5.3530 -11.8332 1.7864 36 1 5.3422 -12.0043 0.0147 37 1 3.1481 -13.1537 0.1400 38 1 3.1596 -12.9822 1.9117 39 1 2.6923 -15.3331 1.5301 40 1 3.6493 -16.1049 0.2307 41 1 3.6674 -16.7078 3.0798 42 1 4.5959 -17.5047 1.7781 43 1 6.3840 -16.2014 2.1942 44 1 6.3049 -13.8900 2.4381 45 1 4.7341 -14.0100 3.2956 46 1 1.6755 -6.8436 0.4209 47 1 0.3518 -4.7827 0.2406 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493671639.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:33:05 Heat of formation + Delta-G solvation = -56.046484 kcal Electronic energy + Delta-G solvation = -25635.056600 eV Core-core repulsion = 21782.054471 eV Total energy + Delta-G solvation = -3853.002129 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.92901 -40.62408 -39.67692 -38.49845 -36.31461 -34.73217 -34.01298 -33.13272 -31.96407 -30.35759 -29.78606 -28.18134 -27.43105 -24.96060 -23.85575 -23.50238 -22.37993 -22.05857 -21.06004 -20.52150 -19.71771 -18.84282 -18.21960 -17.66738 -16.89283 -16.63968 -16.45425 -16.32633 -15.98474 -15.62351 -15.52561 -15.39528 -15.28210 -14.70119 -14.63702 -14.57129 -14.19194 -14.10462 -13.59501 -13.31650 -13.27110 -13.15603 -13.08522 -12.68130 -12.58007 -12.48728 -12.38062 -12.22719 -12.14061 -11.91799 -11.67953 -11.40993 -11.21510 -11.10560 -10.96161 -10.57862 -10.05867 -9.88967 -9.57354 -8.67626 -8.51829 -6.18141 -0.24121 0.58803 1.14150 1.36028 1.47480 1.51665 2.15730 2.28654 2.37912 2.86826 3.18132 3.29217 3.42820 3.63800 3.77922 3.84837 3.95002 3.99737 4.08861 4.15379 4.27818 4.32066 4.35832 4.38910 4.48091 4.52113 4.56190 4.65758 4.70873 4.78949 4.94935 4.98452 5.02765 5.04166 5.05156 5.07335 5.19762 5.20877 5.29302 5.33946 5.38946 5.49619 5.59502 5.64192 5.79288 5.81813 5.97373 6.10836 6.43470 6.61938 6.92409 7.29915 7.69321 8.69914 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.042951 B = 0.001424 C = 0.001392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.748073 B =19664.638725 C =20107.281606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.017 4.017 3 Si 1.017 2.983 4 H -0.257 1.257 5 H -0.271 1.271 6 H -0.257 1.257 7 C -0.419 4.419 8 H 0.105 0.895 9 O -0.220 6.220 10 C 0.129 3.871 11 C -0.249 4.249 12 C -0.041 4.041 13 C -0.171 4.171 14 C 0.014 3.986 15 C -0.245 4.245 16 C 0.547 3.453 17 O -0.597 6.597 18 N -0.716 5.716 19 C 0.120 3.880 20 C -0.107 4.107 21 C -0.116 4.116 22 H 0.078 0.922 23 C -0.144 4.144 24 C 0.039 3.961 25 N -0.692 5.692 26 C 0.043 3.957 27 C -0.038 4.038 28 C -0.206 4.206 29 H 0.275 0.725 30 H 0.125 0.875 31 H 0.144 0.856 32 H 0.123 0.877 33 H 0.153 0.847 34 H 0.417 0.583 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.342 0.658 44 H 0.074 0.926 45 H 0.076 0.924 46 H 0.161 0.839 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.151 -29.138 1.882 30.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.216 4.216 3 Si 0.836 3.164 4 H -0.181 1.181 5 H -0.196 1.196 6 H -0.182 1.182 7 C -0.495 4.495 8 H 0.122 0.878 9 O -0.125 6.125 10 C 0.077 3.923 11 C -0.268 4.268 12 C -0.059 4.059 13 C -0.172 4.172 14 C -0.006 4.006 15 C -0.266 4.266 16 C 0.339 3.661 17 O -0.481 6.481 18 N -0.367 5.367 19 C -0.004 4.004 20 C -0.145 4.145 21 C -0.137 4.137 22 H 0.096 0.904 23 C -0.183 4.183 24 C -0.091 4.091 25 N -0.319 5.319 26 C -0.087 4.087 27 C -0.055 4.055 28 C -0.226 4.226 29 H 0.084 0.916 30 H 0.142 0.858 31 H 0.161 0.839 32 H 0.141 0.859 33 H 0.171 0.829 34 H 0.254 0.746 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.158 0.842 44 H 0.092 0.908 45 H 0.095 0.905 46 H 0.179 0.821 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 7.423 -28.996 2.600 30.044 hybrid contribution -0.179 1.179 -1.042 1.584 sum 7.244 -27.818 1.558 28.788 Atomic orbital electron populations 1.70138 1.08042 1.29161 1.47634 1.26588 0.96807 1.02715 0.95441 0.84662 0.77468 0.74241 0.79991 1.18110 1.19561 1.18177 1.21863 0.92718 0.81256 1.53614 0.87753 1.83881 1.36222 1.12743 1.79627 1.20202 0.91551 0.88052 0.92534 1.21200 0.93079 1.00112 1.12420 1.21318 1.00084 0.90747 0.93755 1.18790 0.93282 0.92806 1.12294 1.22169 0.99229 0.90670 0.88524 1.22782 1.01140 0.91148 1.11500 1.18567 0.87171 0.84995 0.75409 1.90777 1.16032 1.88044 1.53221 1.45772 1.11250 1.05581 1.74125 1.21381 0.94466 0.83284 1.01271 1.21667 0.97542 0.91493 1.03833 1.22623 0.97781 0.94483 0.98796 0.90382 1.22827 0.99814 0.95386 1.00227 1.22770 0.91876 0.97468 0.96975 1.62788 1.05678 1.04571 1.58896 1.23329 1.00356 0.89301 0.95696 1.21290 0.92600 0.97517 0.94115 1.20425 1.00391 0.90135 1.11612 0.91589 0.85776 0.83862 0.85876 0.82928 0.74644 0.92440 0.92705 0.89940 0.90087 0.90474 0.90621 0.91080 0.90688 0.84179 0.90755 0.90537 0.82143 0.85885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.19 13.67 21.62 0.30 -53.90 16 2 C -0.02 -0.91 5.49 84.86 0.47 -0.44 16 3 Si 1.02 41.36 29.55 68.60 2.03 43.39 16 4 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 5 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 6 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 7 C -0.42 -23.55 9.48 67.94 0.64 -22.90 16 8 H 0.11 5.36 5.18 -2.91 -0.02 5.34 16 9 O -0.22 -12.71 9.74 -20.21 -0.20 -12.91 16 10 C 0.13 6.12 6.66 22.72 0.15 6.27 16 11 C -0.25 -10.42 9.14 22.34 0.20 -10.22 16 12 C -0.04 -1.39 9.78 22.55 0.22 -1.17 16 13 C -0.17 -5.28 5.87 -20.12 -0.12 -5.40 16 14 C 0.01 0.37 9.45 23.82 0.23 0.60 16 15 C -0.25 -5.45 9.41 23.61 0.22 -5.23 16 16 C 0.55 13.16 7.74 86.32 0.67 13.83 16 17 O -0.60 -19.42 16.23 -4.42 -0.07 -19.49 16 18 N -0.72 -11.33 5.55 -467.50 -2.60 -13.93 16 19 C 0.12 1.70 5.54 86.38 0.48 2.18 16 20 C -0.11 -0.85 4.71 30.59 0.14 -0.71 16 21 C -0.12 -0.97 3.05 -9.59 -0.03 -1.00 16 22 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 23 C -0.14 -1.02 6.51 31.47 0.20 -0.82 16 24 C 0.04 0.34 7.52 86.45 0.65 0.99 16 25 N -0.69 -7.91 7.52 -501.04 -3.77 -11.68 16 26 C 0.04 0.46 6.32 86.56 0.55 1.01 16 27 C -0.04 -1.16 9.40 22.55 0.21 -0.94 16 28 C -0.21 -8.16 9.97 22.34 0.22 -7.93 16 29 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 30 H 0.12 5.26 5.62 -2.91 -0.02 5.24 16 31 H 0.14 3.96 8.06 -2.91 -0.02 3.94 16 32 H 0.12 3.35 7.52 -2.91 -0.02 3.33 16 33 H 0.15 2.48 6.07 -2.91 -0.02 2.47 16 34 H 0.42 3.95 8.45 -92.71 -0.78 3.17 16 35 H 0.06 0.96 7.53 -2.38 -0.02 0.94 16 36 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.08 0.57 8.05 -2.38 -0.02 0.55 16 39 H 0.08 0.50 7.85 -2.38 -0.02 0.49 16 40 H 0.08 0.45 8.14 -2.38 -0.02 0.43 16 41 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 43 H 0.34 3.14 8.92 -89.69 -0.80 2.34 16 44 H 0.07 0.84 8.07 -2.39 -0.02 0.83 16 45 H 0.08 0.93 7.98 -2.39 -0.02 0.91 16 46 H 0.16 3.50 6.16 -2.91 -0.02 3.48 16 47 H 0.12 4.70 8.06 -2.91 -0.02 4.68 16 Total: -1.00 -73.24 390.31 0.22 -73.01 By element: Atomic # 1 Polarization: 27.96 SS G_CDS: -0.58 Total: 27.38 kcal Atomic # 6 Polarization: -37.00 SS G_CDS: 5.11 Total: -31.89 kcal Atomic # 7 Polarization: -73.43 SS G_CDS: -6.07 Total: -79.50 kcal Atomic # 8 Polarization: -32.13 SS G_CDS: -0.27 Total: -32.40 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Total: -73.24 0.22 -73.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493671639.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.968 kcal (2) G-P(sol) polarization free energy of solvation -73.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds