Wall clock time and date at job start Sat Apr 11 2020 02:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86807 * 119.99961 * 2 1 4 4 H 1.48501 * 109.47048 * 270.00142 * 3 2 1 5 5 H 1.48496 * 109.46906 * 30.00227 * 3 2 1 6 6 H 1.48497 * 109.47346 * 150.00173 * 3 2 1 7 7 C 1.38715 * 120.00291 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99833 * 359.97438 * 7 2 1 9 9 O 1.34785 * 120.00305 * 180.02562 * 7 2 1 10 10 C 1.35568 * 117.00036 * 185.06129 * 9 7 2 11 11 C 1.39173 * 119.90125 * 354.43754 * 10 9 7 12 12 C 1.37599 * 120.10359 * 180.02562 * 11 10 9 13 13 C 1.40021 * 119.89619 * 359.97438 * 12 11 10 14 14 C 1.46966 * 120.09738 * 179.97438 * 13 12 11 15 15 C 1.35019 * 119.99752 * 180.02562 * 14 13 12 16 16 C 1.46253 * 119.99905 * 180.02562 * 15 14 13 17 17 O 1.21717 * 120.00241 * 359.97438 * 16 15 14 18 18 N 1.34784 * 119.99962 * 179.97438 * 16 15 14 19 19 C 1.46503 * 119.99968 * 179.97438 * 18 16 15 20 20 C 1.53001 * 109.46939 * 180.02562 * 19 18 16 21 21 C 1.53002 * 109.46633 * 179.97438 * 20 19 18 22 22 H 1.09001 * 109.88130 * 54.57975 * 21 20 19 23 23 C 1.54317 * 109.88363 * 175.77525 * 21 20 19 24 24 C 1.55431 * 103.04461 * 141.68986 * 23 21 20 25 25 C 1.54898 * 101.52337 * 324.36569 * 24 23 21 26 26 N 1.47439 * 109.89160 * 293.54291 * 21 20 19 27 27 C 1.40016 * 119.79942 * 0.25959 * 13 12 11 28 28 C 1.37599 * 119.90009 * 359.46605 * 27 13 12 29 29 H 0.96990 * 120.00029 * 359.97438 * 1 2 3 30 30 H 1.08006 * 119.94720 * 0.02934 * 11 10 9 31 31 H 1.08003 * 120.05176 * 179.97438 * 12 11 10 32 32 H 1.07994 * 120.00095 * 0.02562 * 14 13 12 33 33 H 1.07999 * 119.99932 * 359.97438 * 15 14 13 34 34 H 0.96997 * 119.99741 * 0.02562 * 18 16 15 35 35 H 1.08997 * 109.46874 * 60.00281 * 19 18 16 36 36 H 1.09008 * 109.46692 * 300.00070 * 19 18 16 37 37 H 1.08997 * 109.47321 * 60.00295 * 20 19 18 38 38 H 1.08994 * 109.47135 * 300.00014 * 20 19 18 39 39 H 1.08996 * 110.70724 * 260.07341 * 23 21 20 40 40 H 1.09000 * 110.71078 * 23.13193 * 23 21 20 41 41 H 1.09002 * 111.10870 * 206.29492 * 24 23 21 42 42 H 1.09001 * 111.00334 * 82.39043 * 24 23 21 43 43 H 1.09005 * 110.37273 * 278.18088 * 25 24 23 44 44 H 1.09005 * 110.37806 * 155.94911 * 25 24 23 45 45 H 1.00900 * 110.99561 * 3.85570 * 26 21 20 46 46 H 1.08003 * 120.05441 * 179.73999 * 27 13 12 47 47 H 1.07993 * 119.95527 * 180.30133 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0087 -1.2013 -0.0005 8 1 1.4687 -2.1366 -0.0005 9 8 3.3566 -1.2013 0.0000 10 6 3.9721 -2.4044 -0.1071 11 6 3.2171 -3.5735 -0.0944 12 6 3.8376 -4.7969 -0.2023 13 6 5.2307 -4.8645 -0.3257 14 6 5.8980 -6.1688 -0.4407 15 6 7.2416 -6.2316 -0.5590 16 6 7.9057 -7.5296 -0.6741 17 8 7.2473 -8.5532 -0.6626 18 7 9.2468 -7.5923 -0.7927 19 6 9.9121 -8.8925 -0.9074 20 6 11.4229 -8.6834 -1.0281 21 6 12.1177 -10.0414 -1.1472 22 1 11.6877 -10.6065 -1.9741 23 6 13.6303 -9.8388 -1.3758 24 6 14.2681 -10.9795 -0.5345 25 6 13.3054 -11.0459 0.6771 26 7 11.9631 -10.7959 0.1100 27 6 5.9866 -3.6859 -0.3331 28 6 5.3570 -2.4666 -0.2304 29 1 -0.4850 0.8400 0.0004 30 1 2.1425 -3.5204 0.0004 31 1 3.2509 -5.7037 -0.1919 32 1 5.3138 -7.0770 -0.4305 33 1 7.8258 -5.3233 -0.5696 34 1 9.7715 -6.7765 -0.8015 35 1 9.5449 -9.4116 -1.7926 36 1 9.6979 -9.4896 -0.0209 37 1 11.7898 -8.1644 -0.1426 38 1 11.6374 -8.0861 -1.9143 39 1 13.8793 -9.9528 -2.4308 40 1 13.9482 -8.8626 -1.0096 41 1 15.2773 -10.7163 -0.2174 42 1 14.2667 -11.9196 -1.0863 43 1 13.5589 -10.2759 1.4058 44 1 13.3444 -12.0323 1.1393 45 1 11.3820 -10.2934 0.7642 46 1 7.0617 -3.7333 -0.4239 47 1 5.9387 -1.5568 -0.2409 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493744636.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:33:25 Heat of formation + Delta-G solvation = -31.259739 kcal Electronic energy + Delta-G solvation = -25718.197068 eV Core-core repulsion = 21866.269773 eV Total energy + Delta-G solvation = -3851.927296 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.84994 -39.37303 -39.04457 -37.07822 -35.35007 -33.25577 -32.49959 -32.03969 -30.60192 -30.53802 -28.74470 -27.43278 -25.63570 -23.92022 -22.62066 -22.26692 -21.47315 -21.02479 -20.61099 -19.30074 -18.08113 -17.46525 -17.15309 -16.71840 -16.55307 -15.72506 -15.49352 -15.02114 -14.95845 -14.18562 -14.13388 -14.05199 -13.98178 -13.82588 -13.69428 -13.54671 -12.85477 -12.77518 -12.63220 -12.47378 -12.41243 -12.29123 -11.90731 -11.81765 -11.75862 -11.47591 -11.35063 -11.20646 -11.19256 -11.02907 -10.77127 -10.28483 -9.84122 -9.66583 -9.55510 -9.18205 -8.91883 -8.88770 -8.47768 -7.24987 -6.60917 -4.24790 0.98487 2.02651 2.47208 3.11137 3.13011 3.15019 3.28154 3.52314 3.73573 4.08133 4.14376 4.24574 4.33165 4.42267 4.61812 4.62620 4.64754 4.72345 4.93379 4.95117 5.02285 5.04583 5.16206 5.17104 5.30907 5.38124 5.41077 5.42459 5.50729 5.52182 5.59181 5.62184 5.71998 5.82991 5.93386 6.01600 6.27414 6.31264 6.41973 6.43559 6.52230 6.66788 6.89082 6.92062 7.08225 7.15600 7.41073 7.48795 7.62225 7.83552 8.29623 8.72388 9.32525 10.45374 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.035772 B = 0.001482 C = 0.001440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.539022 B =18893.046585 C =19442.083624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.067 3.933 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.258 1.258 7 C -0.392 4.392 8 H 0.111 0.889 9 O -0.202 6.202 10 C 0.173 3.827 11 C -0.229 4.229 12 C -0.037 4.037 13 C -0.190 4.190 14 C 0.036 3.964 15 C -0.279 4.279 16 C 0.554 3.446 17 O -0.556 6.556 18 N -0.736 5.736 19 C 0.122 3.878 20 C -0.149 4.149 21 C 0.080 3.920 22 H 0.089 0.911 23 C -0.140 4.140 24 C -0.130 4.130 25 C 0.043 3.957 26 N -0.681 5.681 27 C -0.046 4.046 28 C -0.199 4.199 29 H 0.283 0.717 30 H 0.138 0.862 31 H 0.117 0.883 32 H 0.125 0.875 33 H 0.123 0.877 34 H 0.399 0.601 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.041 0.959 44 H 0.078 0.922 45 H 0.342 0.658 46 H 0.119 0.881 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.773 -15.410 -1.340 30.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.182 1.182 7 C -0.467 4.467 8 H 0.128 0.872 9 O -0.105 6.105 10 C 0.119 3.881 11 C -0.249 4.249 12 C -0.055 4.055 13 C -0.191 4.191 14 C 0.016 3.984 15 C -0.300 4.300 16 C 0.346 3.654 17 O -0.436 6.436 18 N -0.388 5.388 19 C -0.002 4.002 20 C -0.188 4.188 21 C -0.030 4.030 22 H 0.107 0.893 23 C -0.178 4.178 24 C -0.168 4.168 25 C -0.086 4.086 26 N -0.312 5.312 27 C -0.064 4.064 28 C -0.219 4.219 29 H 0.094 0.906 30 H 0.155 0.845 31 H 0.135 0.865 32 H 0.143 0.857 33 H 0.141 0.859 34 H 0.233 0.767 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.094 0.906 43 H 0.060 0.940 44 H 0.097 0.903 45 H 0.160 0.840 46 H 0.137 0.863 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 25.072 -16.395 -1.602 30.000 hybrid contribution 0.620 2.047 0.332 2.165 sum 25.692 -14.348 -1.270 29.454 Atomic orbital electron populations 1.69612 1.05702 1.28986 1.45941 1.24533 0.95070 0.99071 0.95200 0.86161 0.80375 0.81126 0.79187 1.19639 1.20506 1.18223 1.20881 0.76640 0.96936 1.52255 0.87187 1.83504 1.22965 1.26212 1.77840 1.19365 0.91759 0.85362 0.91651 1.21224 1.01382 0.91673 1.10573 1.21050 0.93070 0.97085 0.94304 1.18531 0.93399 0.92015 1.15116 1.22309 0.93981 0.96314 0.85823 1.22461 0.95902 0.95774 1.15827 1.18415 0.81551 0.89976 0.75504 1.90791 1.64776 1.36821 1.51185 1.45875 1.07335 1.09077 1.76493 1.21270 0.90790 0.85570 1.02561 1.22365 0.94912 0.98308 1.03171 1.22251 0.94697 0.91968 0.94094 0.89333 1.22917 0.94764 0.99016 1.01108 1.22741 0.98467 0.99156 0.96451 1.22851 0.88328 1.01176 0.96283 1.62057 1.13026 1.49798 1.06320 1.20878 0.98496 0.91078 0.95933 1.20142 0.91816 0.98005 1.11904 0.90650 0.84488 0.86493 0.85744 0.85908 0.76729 0.91388 0.91347 0.91308 0.90343 0.90614 0.91213 0.90857 0.90618 0.94027 0.90322 0.84034 0.86274 0.86137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.89 13.96 55.48 0.77 -23.11 16 2 C 0.07 1.78 5.49 -17.51 -0.10 1.68 16 3 Si 0.91 20.54 28.62 -169.99 -4.86 15.68 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.26 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.39 -10.49 9.94 30.91 0.31 -10.19 16 8 H 0.11 3.00 5.41 -52.49 -0.28 2.71 16 9 O -0.20 -5.04 8.57 0.73 0.01 -5.04 16 10 C 0.17 3.77 6.66 -38.88 -0.26 3.51 16 11 C -0.23 -4.68 9.14 -39.47 -0.36 -5.04 16 12 C -0.04 -0.64 9.78 -39.15 -0.38 -1.02 16 13 C -0.19 -3.09 5.87 -105.03 -0.62 -3.71 16 14 C 0.04 0.52 9.45 -37.19 -0.35 0.17 16 15 C -0.28 -3.61 9.41 -37.51 -0.35 -3.96 16 16 C 0.55 7.49 7.74 -13.04 -0.10 7.39 16 17 O -0.56 -9.63 16.23 5.17 0.08 -9.55 16 18 N -0.74 -7.02 5.55 -61.75 -0.34 -7.37 16 19 C 0.12 1.04 5.55 -4.04 -0.02 1.02 16 20 C -0.15 -0.82 4.54 -26.73 -0.12 -0.94 16 21 C 0.08 0.48 3.48 -66.73 -0.23 0.25 16 22 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 23 C -0.14 -0.68 6.48 -24.75 -0.16 -0.84 16 24 C -0.13 -0.64 7.10 -24.44 -0.17 -0.81 16 25 C 0.04 0.24 7.56 -2.30 -0.02 0.23 16 26 N -0.68 -4.74 7.26 -103.82 -0.75 -5.49 16 27 C -0.05 -0.73 9.40 -39.15 -0.37 -1.09 16 28 C -0.20 -3.67 9.97 -39.46 -0.39 -4.07 16 29 H 0.28 7.18 8.31 -40.82 -0.34 6.84 16 30 H 0.14 2.92 5.62 -52.48 -0.29 2.62 16 31 H 0.12 1.75 8.06 -52.48 -0.42 1.32 16 32 H 0.12 1.84 7.52 -52.49 -0.39 1.45 16 33 H 0.12 1.32 6.07 -52.49 -0.32 1.00 16 34 H 0.40 2.72 8.45 -40.82 -0.34 2.37 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.66 7.01 -51.92 -0.36 0.30 16 37 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.07 0.31 7.85 -51.93 -0.41 -0.09 16 41 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 42 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 44 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.34 2.32 7.08 -39.29 -0.28 2.04 16 46 H 0.12 1.50 6.16 -52.48 -0.32 1.18 16 47 H 0.12 2.03 8.06 -52.49 -0.42 1.60 16 LS Contribution 387.94 15.07 5.85 5.85 Total: -1.00 -30.31 387.94 -9.75 -40.06 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -6.80 Total: 6.40 kcal Atomic # 6 Polarization: -13.72 SS G_CDS: -3.70 Total: -17.42 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: -0.32 Total: -35.97 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: 0.09 Total: -14.59 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.86 Total: 15.68 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.31 -9.75 -40.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493744636.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.796 kcal (2) G-P(sol) polarization free energy of solvation -30.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds