Wall clock time and date at job start Sat Apr 11 2020 02:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99835 * 2 1 4 4 H 1.48501 * 109.47412 * 89.99247 * 3 2 1 5 5 H 1.48503 * 109.46950 * 209.99703 * 3 2 1 6 6 H 1.48501 * 109.46837 * 329.99411 * 3 2 1 7 7 C 1.37877 * 120.00330 * 179.71615 * 2 1 3 8 8 H 1.08001 * 120.00387 * 185.94712 * 7 2 1 9 9 C 1.50706 * 119.99728 * 5.94441 * 7 2 1 10 10 C 1.52996 * 115.55168 * 279.09298 * 9 7 2 11 11 N 1.46502 * 109.46911 * 302.81711 * 10 9 7 12 12 C 1.34784 * 119.99890 * 184.62882 * 11 10 9 13 13 O 1.21591 * 119.99757 * 5.16243 * 12 11 10 14 14 N 1.34767 * 120.00034 * 185.16743 * 12 11 10 15 15 C 1.47232 * 121.33753 * 5.11760 * 14 12 11 16 16 C 1.52788 * 107.91408 * 115.77596 * 15 14 12 17 17 C 1.50598 * 110.85938 * 47.45537 * 16 15 14 18 18 C 1.38982 * 117.62295 * 159.96593 * 17 16 15 19 19 C 1.37905 * 120.58535 * 179.50231 * 18 17 16 20 20 C 1.38262 * 119.82775 * 359.92962 * 19 18 17 21 21 C 1.37964 * 119.71379 * 0.25000 * 20 19 18 22 22 C 1.37664 * 122.86371 * 339.85320 * 17 16 15 23 23 C 1.46681 * 121.33815 * 184.84066 * 14 12 11 24 24 H 1.09001 * 109.43605 * 344.48005 * 23 14 12 25 25 C 1.53001 * 109.44113 * 104.36182 * 23 14 12 26 26 O 1.42900 * 109.46763 * 64.99910 * 25 23 14 27 27 C 1.52998 * 117.49622 * 133.38274 * 9 7 2 28 28 C 1.52999 * 60.00139 * 252.51529 * 27 9 7 29 29 H 0.97006 * 119.99866 * 174.94844 * 1 2 3 30 30 H 1.08998 * 109.47633 * 62.81697 * 10 9 7 31 31 H 1.09002 * 109.46918 * 182.82097 * 10 9 7 32 32 H 0.96995 * 120.00089 * 4.61687 * 11 10 9 33 33 H 1.09005 * 109.77592 * 235.37724 * 15 14 12 34 34 H 1.09003 * 109.77541 * 356.11847 * 15 14 12 35 35 H 1.08999 * 109.19960 * 167.80994 * 16 15 14 36 36 H 1.08996 * 109.19841 * 287.14820 * 16 15 14 37 37 H 1.08006 * 119.70466 * 359.50294 * 18 17 16 38 38 H 1.08002 * 120.08557 * 179.91819 * 19 18 17 39 39 H 1.08003 * 120.14330 * 180.27569 * 20 19 18 40 40 H 1.08003 * 119.74298 * 180.02562 * 21 20 19 41 41 H 1.08996 * 109.47083 * 184.99737 * 25 23 14 42 42 H 1.09000 * 109.47183 * 305.00242 * 25 23 14 43 43 H 0.96705 * 113.99670 * 180.02562 * 26 25 23 44 44 H 1.09007 * 117.50083 * 359.97438 * 27 9 7 45 45 H 1.09000 * 117.50185 * 145.02157 * 27 9 7 46 46 H 1.09003 * 117.49778 * 252.51149 * 28 27 9 47 47 H 1.08999 * 117.50129 * 107.49099 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4964 2.0466 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4465 2.6526 -0.7002 7 6 2.0046 -1.1940 0.0059 8 1 3.0802 -1.1960 0.1028 9 6 1.2571 -2.4963 -0.1228 10 6 0.6192 -3.0211 1.1650 11 7 1.6514 -3.1773 2.1928 12 6 1.3370 -3.7171 3.3871 13 8 0.2211 -4.1601 3.5791 14 7 2.2594 -3.7657 4.3685 15 6 3.5822 -3.1395 4.2077 16 6 3.6966 -2.0127 5.2331 17 6 3.2600 -2.4816 6.5960 18 6 3.6893 -1.7503 7.6972 19 6 3.3174 -2.1192 8.9728 20 6 2.5091 -3.2250 9.1608 21 6 2.0845 -3.9551 8.0699 22 6 2.4631 -3.5879 6.7856 23 6 1.9836 -4.4392 5.6420 24 1 0.9108 -4.6055 5.7395 25 6 2.7116 -5.7845 5.6746 26 8 4.1232 -5.5626 5.6618 27 6 1.8004 -3.5276 -1.1138 28 6 0.5171 -2.7592 -1.4359 29 1 -0.4850 -0.8368 -0.0740 30 1 -0.1345 -2.3141 1.5115 31 1 0.1505 -3.9860 0.9712 32 1 2.5611 -2.8924 2.0137 33 1 4.3639 -3.8787 4.3834 34 1 3.6782 -2.7338 3.2005 35 1 4.7327 -1.6781 5.2840 36 1 3.0659 -1.1798 4.9223 37 1 4.3199 -0.8854 7.5524 38 1 3.6568 -1.5458 9.8229 39 1 2.2111 -3.5159 10.1573 40 1 1.4527 -4.8188 8.2161 41 1 2.4369 -6.3244 6.5807 42 1 2.4283 -6.3723 4.8014 43 1 4.6491 -6.3739 5.6806 44 1 2.6982 -3.2640 -1.6731 45 1 1.7036 -4.5803 -0.8485 46 1 -0.4240 -3.3065 -1.3824 47 1 0.5709 -1.9903 -2.2066 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000515548836.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:33:28 Heat of formation + Delta-G solvation = -24.863425 kcal Electronic energy + Delta-G solvation = -29189.827257 eV Core-core repulsion = 25338.177326 eV Total energy + Delta-G solvation = -3851.649931 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.66091 -39.00528 -37.30394 -36.79569 -35.52961 -33.58210 -32.82557 -31.95469 -31.37163 -29.51955 -27.58335 -25.95456 -24.84512 -23.91163 -23.28757 -21.83080 -21.38942 -20.71180 -19.68782 -18.62771 -18.02036 -17.29906 -16.94177 -16.41094 -15.84745 -15.65309 -14.88782 -14.74144 -14.56921 -14.23519 -14.12945 -13.85299 -13.79230 -13.37954 -13.31410 -13.06797 -12.79680 -12.55613 -12.47003 -12.35316 -11.91126 -11.75911 -11.63680 -11.43190 -10.97035 -10.93956 -10.83842 -10.75300 -10.48667 -10.17606 -10.15368 -9.76445 -9.50411 -8.81898 -8.71852 -8.55319 -8.52086 -8.50594 -8.38361 -7.97926 -6.39811 -4.16699 1.34816 1.37728 2.96680 3.38336 3.41652 3.56750 3.66763 3.72811 4.17385 4.37349 4.46237 4.64556 4.71380 4.86697 4.96791 5.06205 5.11339 5.17887 5.21444 5.29143 5.34252 5.45853 5.48403 5.52741 5.62329 5.71807 5.83482 5.89605 5.97189 6.03656 6.14313 6.23466 6.26738 6.38886 6.43016 6.46741 6.53661 6.59670 6.62095 6.79293 6.86166 6.98259 7.16151 7.19320 7.30948 7.44279 7.51963 8.16395 8.32044 8.56622 8.80828 9.13481 9.59837 10.99068 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.013914 B = 0.003810 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.866348 B = 7347.809480 C = 8471.214187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.031 3.969 3 Si 1.067 2.933 4 H -0.288 1.288 5 H -0.288 1.288 6 H -0.284 1.284 7 C -0.576 4.576 8 H 0.052 0.948 9 C 0.006 3.994 10 C 0.177 3.823 11 N -0.714 5.714 12 C 0.706 3.294 13 O -0.606 6.606 14 N -0.625 5.625 15 C 0.111 3.889 16 C -0.099 4.099 17 C -0.052 4.052 18 C -0.122 4.122 19 C -0.122 4.122 20 C -0.126 4.126 21 C -0.115 4.115 22 C -0.071 4.071 23 C 0.202 3.798 24 H 0.118 0.882 25 C 0.073 3.927 26 O -0.560 6.560 27 C -0.193 4.193 28 C -0.174 4.174 29 H 0.276 0.724 30 H 0.059 0.941 31 H 0.039 0.961 32 H 0.399 0.601 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.119 0.881 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.372 0.628 44 H 0.080 0.920 45 H 0.068 0.932 46 H 0.068 0.932 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.407 -8.949 14.852 19.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.176 4.176 3 Si 0.895 3.105 4 H -0.215 1.215 5 H -0.214 1.214 6 H -0.210 1.210 7 C -0.614 4.614 8 H 0.071 0.929 9 C 0.006 3.994 10 C 0.053 3.947 11 N -0.369 5.369 12 C 0.408 3.592 13 O -0.486 6.486 14 N -0.362 5.362 15 C -0.012 4.012 16 C -0.137 4.137 17 C -0.052 4.052 18 C -0.140 4.140 19 C -0.140 4.140 20 C -0.144 4.144 21 C -0.133 4.133 22 C -0.072 4.072 23 C 0.097 3.903 24 H 0.136 0.864 25 C -0.007 4.007 26 O -0.365 6.365 27 C -0.230 4.230 28 C -0.212 4.212 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.057 0.943 32 H 0.236 0.764 33 H 0.110 0.890 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.219 0.781 44 H 0.099 0.901 45 H 0.086 0.914 46 H 0.087 0.913 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.148 -6.959 14.957 18.399 hybrid contribution 0.748 -2.044 -0.088 2.179 sum 8.896 -9.004 14.868 19.526 Atomic orbital electron populations 1.70695 1.06840 1.31795 1.43968 1.25735 0.96504 1.02211 0.93134 0.83576 0.74761 0.75339 0.76794 1.21491 1.21440 1.20998 1.21189 0.93846 0.89544 1.56814 0.92933 1.19328 0.98775 0.95230 0.86114 1.20839 0.88924 0.97832 0.87133 1.45156 1.14263 1.64973 1.12475 1.15860 0.83526 0.79225 0.80608 1.90846 1.20709 1.55115 1.81919 1.47074 1.15160 1.59499 1.14440 1.21734 0.85293 0.95226 0.98921 1.20845 1.01970 0.99013 0.91838 1.19442 0.96147 0.94430 0.95161 1.21172 1.00766 0.99793 0.92287 1.21009 0.98724 0.97389 0.96899 1.20964 0.98901 0.96152 0.98389 1.20972 1.00422 1.00090 0.91828 1.19507 0.97903 0.95765 0.94046 1.19711 1.00139 0.89316 0.81166 0.86440 1.22642 0.81666 0.96295 1.00052 1.86560 1.16976 1.35431 1.97516 1.22869 0.97607 0.95557 1.06993 1.22757 0.93826 1.02532 1.02106 0.91210 0.92244 0.94292 0.76363 0.88981 0.89835 0.89800 0.90007 0.86234 0.86349 0.86270 0.86310 0.92855 0.92905 0.78100 0.90127 0.91397 0.91308 0.89630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.87 13.61 55.43 0.75 -25.11 16 2 C 0.03 0.83 5.42 -17.82 -0.10 0.74 16 3 Si 1.07 24.04 29.91 -169.99 -5.08 18.96 16 4 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.58 -14.80 8.19 -34.44 -0.28 -15.08 16 8 H 0.05 1.34 7.82 -52.49 -0.41 0.93 16 9 C 0.01 0.15 1.02 -155.66 -0.16 -0.01 16 10 C 0.18 4.08 5.47 -4.04 -0.02 4.05 16 11 N -0.71 -14.75 5.33 -65.23 -0.35 -15.10 16 12 C 0.71 14.33 8.32 -86.92 -0.72 13.60 16 13 O -0.61 -14.16 15.85 5.29 0.08 -14.08 16 14 N -0.62 -10.16 2.58 -172.68 -0.45 -10.60 16 15 C 0.11 1.56 6.14 -3.75 -0.02 1.54 16 16 C -0.10 -1.31 5.87 -28.04 -0.16 -1.47 16 17 C -0.05 -0.70 5.76 -104.61 -0.60 -1.30 16 18 C -0.12 -1.45 9.59 -39.43 -0.38 -1.83 16 19 C -0.12 -1.31 10.04 -39.69 -0.40 -1.71 16 20 C -0.13 -1.33 10.05 -39.67 -0.40 -1.73 16 21 C -0.11 -1.33 9.30 -39.46 -0.37 -1.70 16 22 C -0.07 -0.96 4.67 -104.75 -0.49 -1.45 16 23 C 0.20 2.87 2.73 -69.12 -0.19 2.68 16 24 H 0.12 1.83 7.14 -51.93 -0.37 1.46 16 25 C 0.07 0.81 6.71 37.16 0.25 1.06 16 26 O -0.56 -5.82 10.69 -35.23 -0.38 -6.20 16 27 C -0.19 -4.01 9.93 -26.73 -0.27 -4.28 16 28 C -0.17 -3.88 8.99 -26.73 -0.24 -4.12 16 29 H 0.28 7.94 6.00 -40.82 -0.25 7.70 16 30 H 0.06 1.55 7.51 -51.93 -0.39 1.16 16 31 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 32 H 0.40 7.76 5.62 -40.82 -0.23 7.54 16 33 H 0.09 1.20 5.94 -51.93 -0.31 0.89 16 34 H 0.08 1.20 5.69 -51.93 -0.30 0.90 16 35 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 36 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.12 1.21 8.05 -52.48 -0.42 0.78 16 38 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 39 H 0.12 0.97 8.06 -52.48 -0.42 0.54 16 40 H 0.12 1.14 8.05 -52.48 -0.42 0.71 16 41 H 0.05 0.48 8.00 -51.93 -0.42 0.06 16 42 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.37 2.26 9.12 45.56 0.42 2.67 16 44 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 45 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 46 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 47 H 0.09 2.01 8.14 -51.93 -0.42 1.59 16 LS Contribution 377.58 15.07 5.69 5.69 Total: -1.00 -32.28 377.58 -10.39 -42.67 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: -6.11 Total: 14.78 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: -4.55 Total: -11.00 kcal Atomic # 7 Polarization: -50.78 SS G_CDS: -0.04 Total: -50.82 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -0.29 Total: -20.27 kcal Atomic # 14 Polarization: 24.04 SS G_CDS: -5.08 Total: 18.96 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.28 -10.39 -42.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000515548836.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.804 kcal (2) G-P(sol) polarization free energy of solvation -32.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds