Wall clock time and date at job start Sat Apr 11 2020 02:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86802 * 120.00092 * 2 1 4 4 H 1.48503 * 109.47016 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47318 * 300.00281 * 3 2 1 6 6 H 1.48499 * 109.46993 * 60.00509 * 3 2 1 7 7 C 1.38946 * 120.00136 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00555 * 179.97438 * 7 2 1 9 9 N 1.37096 * 119.99935 * 359.97438 * 7 2 1 10 10 C 1.34774 * 120.00529 * 180.02562 * 9 7 2 11 11 O 1.21301 * 119.99632 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00521 * 179.97438 * 10 9 7 13 13 N 1.46894 * 109.47294 * 173.77018 * 12 10 9 14 14 C 1.46854 * 111.00226 * 169.41240 * 13 12 10 15 15 C 1.53149 * 109.56371 * 185.87920 * 14 13 12 16 16 C 1.53118 * 109.21552 * 300.76893 * 15 14 13 17 17 C 1.53013 * 109.22707 * 57.47104 * 16 15 14 18 18 C 1.53271 * 109.41267 * 182.52665 * 17 16 15 19 19 C 1.53090 * 108.36719 * 175.89837 * 18 17 16 20 20 C 1.50782 * 109.60181 * 48.43776 * 19 18 17 21 21 C 1.38507 * 118.75901 * 161.48049 * 20 19 18 22 22 C 1.38124 * 120.30249 * 179.82772 * 21 20 19 23 23 C 1.38300 * 119.97909 * 359.97438 * 22 21 20 24 24 C 1.37980 * 119.97304 * 0.11573 * 23 22 21 25 25 C 1.38372 * 121.39067 * 341.54126 * 20 19 18 26 26 O 1.35842 * 121.84032 * 0.72715 * 25 20 19 27 27 C 1.46871 * 111.00094 * 293.63153 * 13 12 10 28 28 H 0.97005 * 119.99752 * 359.97438 * 1 2 3 29 29 H 0.97003 * 120.00075 * 359.97438 * 9 7 2 30 30 H 1.09004 * 109.46875 * 53.76810 * 12 10 9 31 31 H 1.08995 * 109.46973 * 293.77026 * 12 10 9 32 32 H 1.09001 * 109.46270 * 305.89761 * 14 13 12 33 33 H 1.09002 * 109.46084 * 65.85567 * 14 13 12 34 34 H 1.09005 * 109.58393 * 180.81982 * 15 14 13 35 35 H 1.09005 * 109.49010 * 60.65789 * 15 14 13 36 36 H 1.09006 * 109.51961 * 297.53149 * 16 15 14 37 37 H 1.09007 * 109.52419 * 177.41457 * 16 15 14 38 38 H 1.08996 * 109.68456 * 295.62389 * 18 17 16 39 39 H 1.08998 * 109.68073 * 56.14240 * 18 17 16 40 40 H 1.08998 * 109.44731 * 168.47705 * 19 18 17 41 41 H 1.08996 * 109.45047 * 288.39555 * 19 18 17 42 42 H 1.07996 * 119.84908 * 359.83601 * 21 20 19 43 43 H 1.07996 * 120.01207 * 180.02562 * 22 21 20 44 44 H 1.07996 * 120.01236 * 180.13380 * 23 22 21 45 45 H 1.07998 * 119.90067 * 180.02562 * 24 23 22 46 46 H 1.08995 * 109.45223 * 54.35668 * 27 13 12 47 47 H 1.09001 * 109.44772 * 294.42297 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8894 2.3965 -1.2124 6 1 1.8895 2.3964 1.2126 7 6 2.0088 -1.2033 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0010 12 6 1.2437 -4.8629 0.0000 13 7 2.1911 -5.9754 -0.1504 14 6 1.5323 -7.2647 0.0955 15 6 2.5755 -8.3857 0.0751 16 6 3.2729 -8.4004 -1.2879 17 6 3.9058 -7.0312 -1.5448 18 6 4.5510 -7.0209 -2.9351 19 6 5.0853 -5.6126 -3.2086 20 6 5.8862 -5.1364 -2.0232 21 6 6.7682 -4.0823 -2.1949 22 6 7.5151 -3.6180 -1.1298 23 6 7.3835 -4.2060 0.1150 24 6 6.5079 -5.2577 0.2916 25 6 5.7563 -5.7302 -0.7801 26 8 4.9156 -6.7763 -0.5700 27 6 2.8288 -5.9485 -1.4731 28 1 -0.4850 0.8401 0.0004 29 1 0.3533 -2.3906 0.0002 30 1 0.5356 -4.8740 -0.8287 31 1 0.7037 -4.9702 0.9407 32 1 1.0425 -7.2424 1.0690 33 1 0.7889 -7.4465 -0.6807 34 1 2.0848 -9.3445 0.2431 35 1 3.3124 -8.2111 0.8591 36 1 2.5431 -8.6164 -2.0682 37 1 4.0482 -9.1666 -1.2922 38 1 5.3720 -7.7373 -2.9641 39 1 3.8071 -7.2845 -3.6869 40 1 5.7222 -5.6315 -4.0929 41 1 4.2495 -4.9339 -3.3782 42 1 6.8722 -3.6212 -3.1659 43 1 8.2011 -2.7956 -1.2689 44 1 7.9657 -3.8421 0.9486 45 1 6.4058 -5.7157 1.2642 46 1 3.2844 -4.9719 -1.6366 47 1 2.0781 -6.1318 -2.2418 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528737047.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:33:37 Heat of formation + Delta-G solvation = -44.276934 kcal Electronic energy + Delta-G solvation = -30032.171892 eV Core-core repulsion = 26179.680128 eV Total energy + Delta-G solvation = -3852.491763 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.93411 -38.73522 -37.72388 -36.29145 -34.26953 -33.87917 -32.84531 -31.13971 -30.63407 -29.74201 -27.75957 -27.35771 -24.72725 -24.16741 -23.01033 -22.50502 -21.99552 -20.43061 -19.09772 -18.86494 -17.79223 -17.08452 -16.31087 -15.84798 -15.66993 -15.30503 -14.68102 -14.53928 -14.45237 -14.25535 -14.08810 -13.92436 -13.64893 -13.40285 -13.11703 -12.99375 -12.87798 -12.65478 -12.51470 -12.11803 -11.95812 -11.79908 -11.47123 -11.33693 -11.16514 -11.08667 -10.98439 -10.83654 -10.78619 -10.43487 -10.30827 -10.17743 -10.04559 -9.88631 -9.41126 -8.35477 -8.31742 -7.89735 -7.77943 -7.62230 -6.36300 -3.76106 1.77105 1.92488 3.19127 3.29260 3.36921 3.51349 3.98768 4.02728 4.20622 4.27734 4.63180 4.67133 4.83036 5.00885 5.06033 5.08609 5.13560 5.26990 5.29699 5.34978 5.42830 5.50448 5.55850 5.62095 5.63469 5.69052 5.76828 5.80600 5.81881 5.87270 5.92527 5.94853 6.01121 6.09349 6.11589 6.22926 6.32752 6.37792 6.43350 6.46560 6.73729 6.86795 6.94882 7.22392 7.32317 7.45933 7.60923 7.97443 8.13287 8.69243 9.25184 9.61833 10.14695 10.81914 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.011154 B = 0.004828 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.634225 B = 5797.584902 C = 7423.826003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.020 3.980 3 Si 0.926 3.074 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.292 4.292 8 H 0.103 0.897 9 N -0.569 5.569 10 C 0.442 3.558 11 O -0.562 6.562 12 C 0.045 3.955 13 N -0.504 5.504 14 C 0.053 3.947 15 C -0.113 4.113 16 C -0.106 4.106 17 C 0.129 3.871 18 C -0.146 4.146 19 C -0.077 4.077 20 C -0.159 4.159 21 C -0.084 4.084 22 C -0.158 4.158 23 C -0.087 4.087 24 C -0.138 4.138 25 C 0.164 3.836 26 O -0.291 6.291 27 C 0.034 3.966 28 H 0.269 0.731 29 H 0.390 0.610 30 H 0.043 0.957 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.027 0.973 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.115 0.885 43 H 0.116 0.884 44 H 0.120 0.880 45 H 0.122 0.878 46 H 0.109 0.891 47 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.233 -15.657 -4.829 17.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.180 4.180 3 Si 0.753 3.247 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.421 4.421 8 H 0.120 0.880 9 N -0.207 5.207 10 C 0.227 3.773 11 O -0.444 6.444 12 C -0.086 4.086 13 N -0.228 5.228 14 C -0.075 4.075 15 C -0.151 4.151 16 C -0.143 4.143 17 C 0.090 3.910 18 C -0.185 4.185 19 C -0.114 4.114 20 C -0.160 4.160 21 C -0.102 4.102 22 C -0.176 4.176 23 C -0.105 4.105 24 C -0.157 4.157 25 C 0.119 3.881 26 O -0.204 6.204 27 C -0.094 4.094 28 H 0.079 0.921 29 H 0.223 0.777 30 H 0.061 0.939 31 H 0.107 0.893 32 H 0.093 0.907 33 H 0.045 0.955 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.133 0.867 43 H 0.134 0.866 44 H 0.138 0.862 45 H 0.140 0.860 46 H 0.127 0.873 47 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 7.286 -15.579 -4.316 17.732 hybrid contribution -1.167 1.106 -0.751 1.775 sum 6.119 -14.473 -5.068 16.510 Atomic orbital electron populations 1.69623 1.05898 1.27840 1.51316 1.25218 0.95585 0.99574 0.97667 0.85850 0.79781 0.81405 0.77638 1.19237 1.20877 1.20810 1.19719 0.93303 0.82193 1.46931 0.87958 1.41880 1.09067 1.04587 1.65119 1.19784 0.88629 0.84463 0.84464 1.90566 1.13183 1.86751 1.53919 1.21878 0.93642 0.91554 1.01506 1.61374 1.30815 1.00991 1.29625 1.22163 0.95090 0.89547 1.00672 1.21539 0.98572 0.97236 0.97719 1.21596 0.99582 0.94622 0.98517 1.21626 0.86910 0.95327 0.87109 1.22214 1.01203 0.98013 0.97030 1.20467 0.99198 0.95861 0.95843 1.19606 1.01951 1.00276 0.94149 1.20742 0.95403 0.95312 0.98773 1.20848 1.02058 1.01325 0.93380 1.20789 0.97673 0.95055 0.97016 1.20430 0.99220 0.98706 0.97305 1.18444 0.89792 0.87674 0.92237 1.85927 1.41567 1.45152 1.47772 1.22788 0.95845 1.01621 0.89131 0.92083 0.77698 0.93929 0.89305 0.90712 0.95498 0.91573 0.90151 0.90586 0.90966 0.90572 0.90273 0.90613 0.90421 0.86653 0.86632 0.86194 0.85963 0.87275 0.95058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.96 13.05 55.50 0.72 -24.24 16 2 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 3 Si 0.93 21.43 29.55 -169.99 -5.02 16.41 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.29 -8.21 9.68 -14.94 -0.14 -8.36 16 8 H 0.10 3.05 7.16 -52.48 -0.38 2.68 16 9 N -0.57 -14.57 5.29 -10.96 -0.06 -14.63 16 10 C 0.44 10.53 7.32 -10.99 -0.08 10.45 16 11 O -0.56 -15.08 14.28 5.54 0.08 -15.00 16 12 C 0.05 0.84 5.45 -4.98 -0.03 0.81 16 13 N -0.50 -8.70 4.26 -236.12 -1.01 -9.71 16 14 C 0.05 0.71 5.46 -3.77 -0.02 0.69 16 15 C -0.11 -1.32 5.96 -26.59 -0.16 -1.48 16 16 C -0.11 -1.20 5.01 -26.66 -0.13 -1.33 16 17 C 0.13 1.84 0.69 -90.53 -0.06 1.78 16 18 C -0.15 -1.78 5.06 -26.54 -0.13 -1.92 16 19 C -0.08 -1.06 5.22 -27.80 -0.15 -1.20 16 20 C -0.16 -2.65 5.22 -104.43 -0.55 -3.20 16 21 C -0.08 -1.35 9.67 -39.52 -0.38 -1.73 16 22 C -0.16 -2.49 10.05 -39.60 -0.40 -2.88 16 23 C -0.09 -1.41 10.04 -39.65 -0.40 -1.80 16 24 C -0.14 -2.43 9.94 -39.33 -0.39 -2.82 16 25 C 0.16 2.94 6.05 -39.19 -0.24 2.70 16 26 O -0.29 -4.97 9.08 -19.24 -0.17 -5.14 16 27 C 0.03 0.57 3.37 -3.90 -0.01 0.56 16 28 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.39 9.63 7.90 -40.82 -0.32 9.31 16 30 H 0.04 0.72 8.12 -51.93 -0.42 0.30 16 31 H 0.09 1.50 7.97 -51.93 -0.41 1.09 16 32 H 0.07 0.94 8.01 -51.93 -0.42 0.52 16 33 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.08 1.09 7.84 -51.93 -0.41 0.69 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.08 1.16 7.00 -51.93 -0.36 0.80 16 42 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 43 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 44 H 0.12 1.62 8.06 -52.49 -0.42 1.19 16 45 H 0.12 2.03 8.06 -52.49 -0.42 1.60 16 46 H 0.11 2.24 3.88 -51.93 -0.20 2.04 16 47 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 370.07 15.07 5.58 5.58 Total: -1.00 -32.31 370.07 -10.38 -42.69 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: -7.13 Total: 13.31 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: -3.37 Total: -9.27 kcal Atomic # 7 Polarization: -48.23 SS G_CDS: -0.34 Total: -48.57 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.10 Total: -20.14 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.31 -10.38 -42.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528737047.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.591 kcal (2) G-P(sol) polarization free energy of solvation -32.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds