Wall clock time and date at job start Sat Apr 11 2020 02:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86802 * 120.00092 * 2 1 4 4 H 1.48503 * 109.47016 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47318 * 300.00281 * 3 2 1 6 6 H 1.48499 * 109.46993 * 60.00509 * 3 2 1 7 7 C 1.38946 * 120.00136 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00555 * 179.97438 * 7 2 1 9 9 N 1.37096 * 119.99935 * 359.97438 * 7 2 1 10 10 C 1.34774 * 120.00529 * 180.02562 * 9 7 2 11 11 O 1.21301 * 119.99632 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00521 * 179.97438 * 10 9 7 13 13 N 1.46894 * 109.47294 * 173.77018 * 12 10 9 14 14 C 1.46854 * 111.00226 * 169.41240 * 13 12 10 15 15 C 1.53149 * 109.56371 * 185.87920 * 14 13 12 16 16 C 1.53118 * 109.21552 * 300.76893 * 15 14 13 17 17 C 1.53013 * 109.22707 * 57.47104 * 16 15 14 18 18 C 1.53271 * 109.41267 * 182.52665 * 17 16 15 19 19 C 1.53090 * 108.36719 * 175.89837 * 18 17 16 20 20 C 1.50782 * 109.60181 * 48.43776 * 19 18 17 21 21 C 1.38507 * 118.75901 * 161.48049 * 20 19 18 22 22 C 1.38124 * 120.30249 * 179.82772 * 21 20 19 23 23 C 1.38300 * 119.97909 * 359.97438 * 22 21 20 24 24 C 1.37980 * 119.97304 * 0.11573 * 23 22 21 25 25 C 1.38372 * 121.39067 * 341.54126 * 20 19 18 26 26 O 1.35842 * 121.84032 * 0.72715 * 25 20 19 27 27 C 1.46871 * 111.00094 * 293.63153 * 13 12 10 28 28 H 0.97005 * 119.99752 * 359.97438 * 1 2 3 29 29 H 0.97003 * 120.00075 * 359.97438 * 9 7 2 30 30 H 1.09004 * 109.46875 * 53.76810 * 12 10 9 31 31 H 1.08995 * 109.46973 * 293.77026 * 12 10 9 32 32 H 1.09001 * 109.46270 * 305.89761 * 14 13 12 33 33 H 1.09002 * 109.46084 * 65.85567 * 14 13 12 34 34 H 1.09005 * 109.58393 * 180.81982 * 15 14 13 35 35 H 1.09005 * 109.49010 * 60.65789 * 15 14 13 36 36 H 1.09006 * 109.51961 * 297.53149 * 16 15 14 37 37 H 1.09007 * 109.52419 * 177.41457 * 16 15 14 38 38 H 1.08996 * 109.68456 * 295.62389 * 18 17 16 39 39 H 1.08998 * 109.68073 * 56.14240 * 18 17 16 40 40 H 1.08998 * 109.44731 * 168.47705 * 19 18 17 41 41 H 1.08996 * 109.45047 * 288.39555 * 19 18 17 42 42 H 1.07996 * 119.84908 * 359.83601 * 21 20 19 43 43 H 1.07996 * 120.01207 * 180.02562 * 22 21 20 44 44 H 1.07996 * 120.01236 * 180.13380 * 23 22 21 45 45 H 1.07998 * 119.90067 * 180.02562 * 24 23 22 46 46 H 1.08995 * 109.45223 * 54.35668 * 27 13 12 47 47 H 1.09001 * 109.44772 * 294.42297 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8894 2.3965 -1.2124 6 1 1.8895 2.3964 1.2126 7 6 2.0088 -1.2033 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0010 12 6 1.2437 -4.8629 0.0000 13 7 2.1911 -5.9754 -0.1504 14 6 1.5323 -7.2647 0.0955 15 6 2.5755 -8.3857 0.0751 16 6 3.2729 -8.4004 -1.2879 17 6 3.9058 -7.0312 -1.5448 18 6 4.5510 -7.0209 -2.9351 19 6 5.0853 -5.6126 -3.2086 20 6 5.8862 -5.1364 -2.0232 21 6 6.7682 -4.0823 -2.1949 22 6 7.5151 -3.6180 -1.1298 23 6 7.3835 -4.2060 0.1150 24 6 6.5079 -5.2577 0.2916 25 6 5.7563 -5.7302 -0.7801 26 8 4.9156 -6.7763 -0.5700 27 6 2.8288 -5.9485 -1.4731 28 1 -0.4850 0.8401 0.0004 29 1 0.3533 -2.3906 0.0002 30 1 0.5356 -4.8740 -0.8287 31 1 0.7037 -4.9702 0.9407 32 1 1.0425 -7.2424 1.0690 33 1 0.7889 -7.4465 -0.6807 34 1 2.0848 -9.3445 0.2431 35 1 3.3124 -8.2111 0.8591 36 1 2.5431 -8.6164 -2.0682 37 1 4.0482 -9.1666 -1.2922 38 1 5.3720 -7.7373 -2.9641 39 1 3.8071 -7.2845 -3.6869 40 1 5.7222 -5.6315 -4.0929 41 1 4.2495 -4.9339 -3.3782 42 1 6.8722 -3.6212 -3.1659 43 1 8.2011 -2.7956 -1.2689 44 1 7.9657 -3.8421 0.9486 45 1 6.4058 -5.7157 1.2642 46 1 3.2844 -4.9719 -1.6366 47 1 2.0781 -6.1318 -2.2418 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528737047.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:33:36 Heat of formation + Delta-G solvation = -64.960737 kcal Electronic energy + Delta-G solvation = -30033.068809 eV Core-core repulsion = 26179.680128 eV Total energy + Delta-G solvation = -3853.388680 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.09880 -40.28891 -39.22029 -37.58446 -35.90428 -35.36615 -34.05961 -33.19471 -31.76833 -30.97249 -29.18502 -28.60093 -26.55077 -25.31117 -24.28104 -23.70358 -23.25521 -21.46852 -20.95634 -20.01124 -19.84342 -18.29472 -17.71747 -17.40706 -16.91952 -16.57318 -16.42862 -15.87813 -15.79796 -15.72459 -15.38019 -15.33001 -15.01426 -14.76838 -14.48375 -14.24025 -14.08534 -13.74902 -13.65626 -13.59676 -13.37169 -13.18437 -13.12096 -12.88002 -12.55627 -12.39099 -12.31833 -12.14873 -12.12245 -11.99112 -11.76935 -11.54485 -11.45324 -11.15066 -10.95083 -10.17151 -9.95066 -9.60763 -9.12362 -8.88630 -8.44780 -5.91890 0.50171 0.64981 1.34711 1.39193 1.53358 2.10734 2.27893 2.37617 2.80230 2.97647 3.22295 3.37322 3.61571 3.72045 3.77520 3.92771 3.98510 4.10054 4.16872 4.23536 4.29328 4.31908 4.38041 4.44660 4.51092 4.54468 4.58011 4.65561 4.68195 4.70642 4.80646 4.85568 4.88908 5.00306 5.04000 5.07704 5.12594 5.20387 5.25475 5.42371 5.45614 5.50253 5.62560 5.68086 5.92138 6.02055 6.11656 6.29583 6.64824 6.75750 7.17236 7.61040 8.18638 8.73311 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.011154 B = 0.004828 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.634225 B = 5797.584902 C = 7423.826003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.014 4.014 3 Si 0.987 3.013 4 H -0.276 1.276 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.321 4.321 8 H 0.074 0.926 9 N -0.580 5.580 10 C 0.439 3.561 11 O -0.594 6.594 12 C 0.057 3.943 13 N -0.528 5.528 14 C 0.051 3.949 15 C -0.109 4.109 16 C -0.102 4.102 17 C 0.120 3.880 18 C -0.140 4.140 19 C -0.077 4.077 20 C -0.174 4.174 21 C -0.099 4.099 22 C -0.169 4.169 23 C -0.098 4.098 24 C -0.168 4.168 25 C 0.145 3.855 26 O -0.305 6.305 27 C 0.037 3.963 28 H 0.276 0.724 29 H 0.393 0.607 30 H 0.062 0.938 31 H 0.106 0.894 32 H 0.080 0.920 33 H 0.047 0.953 34 H 0.099 0.901 35 H 0.054 0.946 36 H 0.103 0.897 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.107 0.893 40 H 0.099 0.901 41 H 0.060 0.940 42 H 0.136 0.864 43 H 0.139 0.861 44 H 0.141 0.859 45 H 0.119 0.881 46 H 0.065 0.935 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.535 -16.990 -5.988 18.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.213 4.213 3 Si 0.812 3.188 4 H -0.200 1.200 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.451 4.451 8 H 0.092 0.908 9 N -0.218 5.218 10 C 0.226 3.774 11 O -0.478 6.478 12 C -0.074 4.074 13 N -0.253 5.253 14 C -0.076 4.076 15 C -0.147 4.147 16 C -0.139 4.139 17 C 0.082 3.918 18 C -0.178 4.178 19 C -0.114 4.114 20 C -0.174 4.174 21 C -0.117 4.117 22 C -0.187 4.187 23 C -0.115 4.115 24 C -0.186 4.186 25 C 0.100 3.900 26 O -0.219 6.219 27 C -0.091 4.091 28 H 0.085 0.915 29 H 0.227 0.773 30 H 0.080 0.920 31 H 0.124 0.876 32 H 0.099 0.901 33 H 0.066 0.934 34 H 0.118 0.882 35 H 0.072 0.928 36 H 0.121 0.879 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.126 0.874 40 H 0.118 0.882 41 H 0.078 0.922 42 H 0.154 0.846 43 H 0.157 0.843 44 H 0.158 0.842 45 H 0.137 0.863 46 H 0.084 0.916 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.564 -16.938 -5.476 18.973 hybrid contribution -0.945 1.496 -0.366 1.807 sum 5.619 -15.442 -5.842 17.440 Atomic orbital electron populations 1.69680 1.06734 1.28960 1.51173 1.25947 0.96477 1.02144 0.96731 0.84950 0.78008 0.77549 0.78331 1.20037 1.19562 1.19655 1.19587 0.92372 0.84000 1.49138 0.90781 1.41937 1.09096 1.04678 1.66103 1.20793 0.88588 0.85780 0.82232 1.90552 1.15050 1.87562 1.54683 1.21731 0.93405 0.89141 1.03127 1.61337 1.31349 1.02228 1.30341 1.22298 0.95829 0.87816 1.01633 1.21537 0.97770 0.98100 0.97266 1.21675 1.00349 0.92847 0.99020 1.21948 0.85849 0.96078 0.87900 1.22234 1.02123 0.97013 0.96411 1.20521 0.98665 0.96603 0.95573 1.20011 1.02239 1.00352 0.94848 1.21153 0.95299 0.95325 0.99913 1.21222 1.02415 1.01858 0.93208 1.21115 0.97623 0.94694 0.98112 1.20686 1.00506 0.99873 0.97567 1.18685 0.90218 0.88342 0.92797 1.85909 1.41975 1.44778 1.49249 1.22680 0.96672 1.00421 0.89291 0.91492 0.77343 0.92045 0.87610 0.90147 0.93442 0.88224 0.92752 0.87884 0.89584 0.89423 0.87448 0.88224 0.92154 0.84615 0.84308 0.84153 0.86290 0.91628 0.93608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.93 13.05 21.66 0.28 -50.64 16 2 C -0.01 -0.76 5.50 84.93 0.47 -0.30 16 3 Si 0.99 44.19 29.55 68.60 2.03 46.21 16 4 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 5 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.32 -18.67 9.68 84.04 0.81 -17.85 16 8 H 0.07 4.65 7.16 -2.91 -0.02 4.63 16 9 N -0.58 -30.52 5.29 -306.98 -1.62 -32.14 16 10 C 0.44 21.51 7.32 87.66 0.64 22.16 16 11 O -0.59 -33.35 14.28 -3.09 -0.04 -33.40 16 12 C 0.06 2.08 5.45 85.56 0.47 2.54 16 13 N -0.53 -17.79 4.26 -900.95 -3.84 -21.63 16 14 C 0.05 1.23 5.46 86.36 0.47 1.70 16 15 C -0.11 -2.26 5.96 30.68 0.18 -2.08 16 16 C -0.10 -1.98 5.01 30.64 0.15 -1.83 16 17 C 0.12 3.28 0.69 -10.74 -0.01 3.27 16 18 C -0.14 -3.11 5.06 30.71 0.16 -2.95 16 19 C -0.08 -2.07 5.22 29.90 0.16 -1.91 16 20 C -0.17 -5.90 5.22 -19.74 -0.10 -6.00 16 21 C -0.10 -3.21 9.67 22.31 0.22 -2.99 16 22 C -0.17 -5.40 10.05 22.26 0.22 -5.17 16 23 C -0.10 -3.26 10.04 22.22 0.22 -3.03 16 24 C -0.17 -6.23 9.94 22.43 0.22 -6.00 16 25 C 0.15 5.37 6.05 22.52 0.14 5.51 16 26 O -0.31 -10.54 9.08 -91.77 -0.83 -11.38 16 27 C 0.04 1.23 3.37 86.27 0.29 1.52 16 28 H 0.28 14.21 8.31 -92.70 -0.77 13.44 16 29 H 0.39 19.79 7.90 -92.71 -0.73 19.06 16 30 H 0.06 2.00 8.12 -2.39 -0.02 1.98 16 31 H 0.11 3.46 7.97 -2.39 -0.02 3.44 16 32 H 0.08 1.82 8.01 -2.39 -0.02 1.80 16 33 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.10 1.42 8.14 -2.38 -0.02 1.40 16 35 H 0.05 1.42 7.84 -2.38 -0.02 1.40 16 36 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 37 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 38 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.11 1.76 8.14 -2.39 -0.02 1.75 16 40 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.06 1.83 7.00 -2.39 -0.02 1.81 16 42 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 43 H 0.14 3.62 8.06 -2.91 -0.02 3.60 16 44 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 45 H 0.12 4.26 8.06 -2.91 -0.02 4.24 16 46 H 0.07 2.76 3.88 -2.39 -0.01 2.75 16 47 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -73.08 370.07 0.93 -72.16 By element: Atomic # 1 Polarization: 44.00 SS G_CDS: 0.25 Total: 44.24 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: 4.71 Total: -13.42 kcal Atomic # 7 Polarization: -99.24 SS G_CDS: -5.18 Total: -104.42 kcal Atomic # 8 Polarization: -43.90 SS G_CDS: -0.88 Total: -44.78 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Total: -73.08 0.93 -72.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528737047.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.194 kcal (2) G-P(sol) polarization free energy of solvation -73.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds