Wall clock time and date at job start Sat Apr 11 2020 02:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86793 * 120.00319 * 2 1 4 4 H 1.48501 * 109.47389 * 240.00019 * 3 2 1 5 5 H 1.48507 * 109.47305 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47408 * 119.99595 * 3 2 1 7 7 C 1.37884 * 119.99768 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99483 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99921 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46940 * 179.97438 * 9 7 2 11 11 C 1.53038 * 109.45974 * 174.99847 * 10 9 7 12 12 C 1.53198 * 109.31159 * 181.38889 * 11 10 9 13 13 N 1.46927 * 108.77290 * 305.36584 * 12 11 10 14 14 C 1.34779 * 120.63184 * 233.58914 * 13 12 11 15 15 O 1.21286 * 119.99742 * 359.97438 * 14 13 12 16 16 C 1.50701 * 120.00372 * 180.02562 * 14 13 12 17 17 C 1.50694 * 109.47119 * 179.97438 * 16 14 13 18 18 C 1.38364 * 119.85421 * 89.99568 * 17 16 14 19 19 C 1.37967 * 120.14264 * 179.97438 * 18 17 16 20 20 C 1.39570 * 119.85310 * 0.02562 * 19 18 17 21 21 C 1.47842 * 120.14248 * 179.97438 * 20 19 18 22 22 N 1.34784 * 120.00082 * 180.02562 * 21 20 19 23 23 O 1.21552 * 120.00146 * 359.97438 * 21 20 19 24 24 C 1.39581 * 119.71335 * 0.25292 * 20 19 18 25 25 C 1.37955 * 119.84955 * 359.46623 * 24 20 19 26 26 C 1.46924 * 118.74235 * 53.85904 * 13 12 11 27 27 C 1.53043 * 109.46035 * 295.06971 * 10 9 7 28 28 H 0.97003 * 119.99992 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.46966 * 60.00493 * 9 7 2 30 30 H 1.08995 * 109.47168 * 300.00000 * 9 7 2 31 31 H 1.09002 * 109.45956 * 55.02745 * 10 9 7 32 32 H 1.08996 * 109.49296 * 61.43869 * 11 10 9 33 33 H 1.08997 * 109.52820 * 301.35490 * 11 10 9 34 34 H 1.08999 * 109.58392 * 185.57984 * 12 11 10 35 35 H 1.08994 * 109.70251 * 65.22256 * 12 11 10 36 36 H 1.08997 * 109.46887 * 59.99410 * 16 14 13 37 37 H 1.09007 * 109.46587 * 299.99483 * 16 14 13 38 38 H 1.07998 * 119.92639 * 0.02562 * 18 17 16 39 39 H 1.07996 * 120.07026 * 180.02562 * 19 18 17 40 40 H 0.97000 * 119.99339 * 359.97438 * 22 21 20 41 41 H 0.96995 * 120.00015 * 179.72522 * 22 21 20 42 42 H 1.07995 * 120.07371 * 179.72649 * 24 20 19 43 43 H 1.08002 * 119.92829 * 180.27238 * 25 24 20 44 44 H 1.09007 * 109.58255 * 65.92493 * 26 13 12 45 45 H 1.08997 * 109.59214 * 186.34909 * 26 13 12 46 46 H 1.08993 * 109.49730 * 298.56090 * 27 10 9 47 47 H 1.08995 * 109.49770 * 58.66408 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4838 -4.9838 0.1263 12 6 2.4843 -6.1434 0.1609 13 7 3.3504 -6.0562 -1.0227 14 6 3.4922 -7.1114 -1.8492 15 8 2.9023 -8.1457 -1.6187 16 6 4.3847 -7.0065 -3.0589 17 6 4.3695 -8.3133 -3.8092 18 6 3.4323 -8.5250 -4.8048 19 6 3.4133 -9.7190 -5.4959 20 6 4.3419 -10.7146 -5.1883 21 6 4.3270 -11.9966 -5.9244 22 7 5.2247 -12.9563 -5.6246 23 8 3.5046 -12.1857 -6.7992 24 6 5.2809 -10.4968 -4.1788 25 6 5.2927 -9.2961 -3.4994 26 6 4.0636 -4.7988 -1.2852 27 6 3.0412 -3.6524 -1.3065 28 1 -0.4850 0.8401 -0.0004 29 1 0.6247 -2.5571 -0.8897 30 1 0.6239 -2.5567 0.8902 31 1 2.9289 -3.5554 0.8427 32 1 0.8182 -5.1029 -0.7285 33 1 0.8984 -4.9809 1.0457 34 1 1.9457 -7.0910 0.1506 35 1 3.0915 -6.0781 1.0636 36 1 5.4028 -6.7823 -2.7409 37 1 4.0232 -6.2096 -3.7090 38 1 2.7146 -7.7536 -5.0421 39 1 2.6816 -9.8828 -6.2731 40 1 5.8807 -12.8055 -4.9262 41 1 5.2124 -13.7990 -6.1048 42 1 5.9992 -11.2648 -3.9330 43 1 6.0216 -9.1246 -2.7211 44 1 4.7968 -4.6235 -0.4978 45 1 4.5675 -4.8589 -2.2498 46 1 2.3609 -3.7841 -2.1478 47 1 3.5646 -2.7016 -1.4066 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565835877.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:33:43 Heat of formation + Delta-G solvation = -92.486083 kcal Electronic energy + Delta-G solvation = -27226.240336 eV Core-core repulsion = 23371.658067 eV Total energy + Delta-G solvation = -3854.582269 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.47158 -40.89755 -39.39579 -38.47290 -35.66066 -35.01942 -34.14304 -33.59519 -32.00103 -31.86413 -29.97844 -28.86936 -26.28763 -24.52436 -24.03212 -23.65218 -23.18026 -21.58305 -21.06883 -19.83158 -19.16627 -18.40057 -18.11825 -17.89263 -17.02421 -16.60710 -16.50543 -16.07439 -16.00598 -15.84540 -15.59687 -15.22596 -15.02145 -14.62661 -14.58419 -14.44157 -14.24637 -14.17945 -13.87012 -13.40342 -13.32404 -12.98042 -12.89965 -12.72185 -12.59449 -12.45681 -12.30832 -12.07454 -11.97648 -11.74768 -11.33312 -11.23209 -11.10380 -10.83135 -10.81155 -10.74954 -10.49539 -9.94062 -9.75406 -9.55908 -8.14251 -6.24024 -0.20452 0.43074 1.43706 1.45906 1.53315 1.65646 1.74859 2.14267 2.44648 2.52246 2.87231 3.19524 3.59725 3.69950 3.80027 3.92610 3.99332 4.03021 4.08096 4.17869 4.25613 4.30413 4.40075 4.45439 4.58606 4.61255 4.65306 4.72358 4.85275 4.87459 4.92392 4.99691 5.04555 5.13827 5.26088 5.33437 5.34903 5.37323 5.44593 5.55390 5.57236 5.63597 5.82965 5.84740 5.91577 5.91952 6.30425 6.38909 6.49850 6.93160 7.20585 7.25695 7.44884 8.97449 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.027171 B = 0.001978 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.262933 B =14150.501925 C =14332.894715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.006 4.006 3 Si 0.961 3.039 4 H -0.263 1.263 5 H -0.292 1.292 6 H -0.267 1.267 7 C -0.525 4.525 8 H 0.070 0.930 9 C 0.031 3.969 10 C -0.074 4.074 11 C -0.122 4.122 12 C 0.120 3.880 13 N -0.608 5.608 14 C 0.514 3.486 15 O -0.583 6.583 16 C -0.103 4.103 17 C -0.042 4.042 18 C -0.127 4.127 19 C -0.077 4.077 20 C -0.160 4.160 21 C 0.561 3.439 22 N -0.828 5.828 23 O -0.593 6.593 24 C -0.075 4.075 25 C -0.117 4.117 26 C 0.110 3.890 27 C -0.116 4.116 28 H 0.260 0.740 29 H -0.017 1.017 30 H -0.017 1.017 31 H 0.064 0.936 32 H 0.043 0.957 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.142 0.858 37 H 0.123 0.877 38 H 0.131 0.869 39 H 0.122 0.878 40 H 0.418 0.582 41 H 0.413 0.587 42 H 0.164 0.836 43 H 0.154 0.846 44 H 0.088 0.912 45 H 0.116 0.884 46 H 0.045 0.955 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.723 -20.548 -6.980 28.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.203 4.203 3 Si 0.786 3.214 4 H -0.188 1.188 5 H -0.218 1.218 6 H -0.192 1.192 7 C -0.563 4.563 8 H 0.088 0.912 9 C -0.006 4.006 10 C -0.092 4.092 11 C -0.161 4.161 12 C -0.003 4.003 13 N -0.340 5.340 14 C 0.303 3.697 15 O -0.464 6.464 16 C -0.142 4.142 17 C -0.043 4.043 18 C -0.145 4.145 19 C -0.096 4.096 20 C -0.163 4.163 21 C 0.348 3.652 22 N -0.392 5.392 23 O -0.475 6.475 24 C -0.094 4.094 25 C -0.135 4.135 26 C -0.011 4.011 27 C -0.154 4.154 28 H 0.068 0.932 29 H 0.001 0.999 30 H 0.001 0.999 31 H 0.082 0.918 32 H 0.061 0.939 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.160 0.840 37 H 0.141 0.859 38 H 0.149 0.851 39 H 0.140 0.860 40 H 0.250 0.750 41 H 0.245 0.755 42 H 0.181 0.819 43 H 0.172 0.828 44 H 0.106 0.894 45 H 0.134 0.866 46 H 0.064 0.936 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 17.725 -20.942 -7.358 28.406 hybrid contribution -0.577 0.963 0.202 1.141 sum 17.148 -19.979 -7.156 27.284 Atomic orbital electron populations 1.70116 1.07991 1.27507 1.52334 1.26004 0.95630 1.03411 0.95254 0.85553 0.78200 0.78307 0.79298 1.18789 1.21806 1.19152 1.21646 0.93701 0.91653 1.49290 0.91163 1.19036 0.94135 0.93414 0.94047 1.21042 0.97010 0.93116 0.98049 1.21906 0.97866 0.94904 1.01385 1.21497 0.92448 0.98424 0.87889 1.48273 1.46333 1.13576 1.25852 1.21019 0.81970 0.82438 0.84227 1.90694 1.49872 1.30726 1.75062 1.20885 1.02645 0.96743 0.93950 1.19794 0.94615 0.95657 0.94246 1.21157 0.98953 0.97653 0.96719 1.21270 0.97123 0.92708 0.98486 1.19946 1.00700 0.94823 1.00857 1.18499 0.80316 0.84711 0.81680 1.43554 1.35199 1.18333 1.42114 1.90790 1.40345 1.81760 1.34594 1.21561 0.96816 0.97971 0.93031 1.21298 0.99456 0.92758 0.99993 1.22125 0.93832 0.81079 1.04108 1.21884 0.97929 0.98856 0.96763 0.93154 0.99895 0.99895 0.91768 0.93857 0.91497 0.90559 0.90025 0.84016 0.85871 0.85125 0.85951 0.74969 0.75474 0.81861 0.82795 0.89366 0.86553 0.93603 0.90462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.53 13.29 21.45 0.28 -56.25 16 2 C -0.01 -0.33 5.46 84.66 0.46 0.13 16 3 Si 0.96 42.56 29.54 68.60 2.03 44.59 16 4 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 5 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 6 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 7 C -0.52 -27.84 8.39 25.60 0.21 -27.63 16 8 H 0.07 3.44 7.06 -2.91 -0.02 3.42 16 9 C 0.03 1.54 4.45 29.85 0.13 1.68 16 10 C -0.07 -2.69 2.10 -10.77 -0.02 -2.72 16 11 C -0.12 -4.01 5.36 30.67 0.16 -3.84 16 12 C 0.12 3.24 6.43 86.36 0.56 3.80 16 13 N -0.61 -14.51 2.97 -818.05 -2.43 -16.94 16 14 C 0.51 12.33 7.69 87.66 0.67 13.01 16 15 O -0.58 -18.88 15.45 -3.05 -0.05 -18.93 16 16 C -0.10 -1.55 4.17 29.10 0.12 -1.43 16 17 C -0.04 -0.76 4.38 -19.81 -0.09 -0.85 16 18 C -0.13 -2.64 9.68 22.24 0.22 -2.43 16 19 C -0.08 -1.73 9.60 22.53 0.22 -1.51 16 20 C -0.16 -3.09 5.87 -20.09 -0.12 -3.21 16 21 C 0.56 11.29 8.05 86.78 0.70 11.99 16 22 N -0.83 -7.83 8.83 -175.60 -1.55 -9.38 16 23 O -0.59 -17.50 17.18 -3.88 -0.07 -17.57 16 24 C -0.08 -0.99 9.54 22.53 0.21 -0.77 16 25 C -0.12 -1.67 9.68 22.23 0.22 -1.46 16 26 C 0.11 2.20 6.37 86.51 0.55 2.75 16 27 C -0.12 -3.51 5.21 30.82 0.16 -3.35 16 28 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 29 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 30 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 31 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.08 2.23 7.01 -2.39 -0.02 2.21 16 35 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.14 1.12 7.87 -2.39 -0.02 1.10 16 37 H 0.12 1.52 7.64 -2.38 -0.02 1.50 16 38 H 0.13 2.53 8.06 -2.91 -0.02 2.50 16 39 H 0.12 2.94 7.65 -2.91 -0.02 2.91 16 40 H 0.42 1.05 6.86 -92.71 -0.64 0.42 16 41 H 0.41 2.89 8.93 -92.71 -0.83 2.06 16 42 H 0.16 0.71 6.41 -2.91 -0.02 0.69 16 43 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 44 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 45 H 0.12 1.49 5.93 -2.39 -0.01 1.47 16 46 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 47 H 0.08 2.47 6.91 -2.39 -0.02 2.45 16 Total: -1.00 -80.54 382.81 2.13 -78.41 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -0.46 Total: 11.90 kcal Atomic # 6 Polarization: -20.21 SS G_CDS: 4.37 Total: -15.84 kcal Atomic # 7 Polarization: -78.87 SS G_CDS: -3.69 Total: -82.56 kcal Atomic # 8 Polarization: -36.38 SS G_CDS: -0.11 Total: -36.49 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -80.54 2.13 -78.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565835877.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.076 kcal (2) G-P(sol) polarization free energy of solvation -80.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds