Wall clock time and date at job start Sat Apr 11 2020 02:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.50704 * 109.46771 * 187.51788 * 3 2 1 5 5 C 1.38268 * 119.94153 * 269.72247 * 4 3 2 6 6 C 1.38151 * 120.05357 * 179.72674 * 5 4 3 7 7 C 1.38730 * 119.94178 * 0.57088 * 6 5 4 8 8 O 1.35900 * 120.05556 * 179.67953 * 7 6 5 9 9 C 1.42891 * 116.99901 * 0.02632 * 8 7 6 10 10 C 1.53002 * 109.47413 * 179.97438 * 9 8 7 11 11 H 1.09003 * 109.47000 * 54.99662 * 10 9 8 12 12 O 1.42906 * 109.46837 * 294.99853 * 10 9 8 13 13 C 1.52993 * 109.47481 * 174.99964 * 10 9 8 14 14 N 1.46905 * 109.47430 * 185.00222 * 13 10 9 15 15 C 1.46898 * 111.00117 * 179.97438 * 14 13 10 16 16 C 1.53002 * 109.47001 * 185.34732 * 15 14 13 17 17 C 1.50706 * 115.54750 * 65.04799 * 16 15 14 18 18 H 1.07994 * 119.99740 * 265.44238 * 17 16 15 19 19 C 1.37876 * 119.99886 * 85.44955 * 17 16 15 20 20 N 1.31513 * 119.99966 * 353.59271 * 19 17 16 21 21 Si 1.86797 * 120.00017 * 173.59539 * 19 17 16 22 22 H 1.48499 * 109.47149 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47205 * 119.99726 * 21 19 17 24 24 H 1.48500 * 109.47217 * 239.99634 * 21 19 17 25 25 C 1.53001 * 117.49868 * 279.38072 * 16 15 14 26 26 C 1.52994 * 117.50107 * 210.71859 * 16 15 14 27 27 C 1.38735 * 119.89033 * 359.70667 * 7 6 5 28 28 C 1.38147 * 119.94557 * 359.97438 * 27 7 6 29 29 H 1.08999 * 109.46858 * 307.51417 * 3 2 1 30 30 H 1.08994 * 109.46953 * 67.52094 * 3 2 1 31 31 H 1.08000 * 119.97479 * 359.97438 * 5 4 3 32 32 H 1.07993 * 120.02669 * 180.24881 * 6 5 4 33 33 H 1.09004 * 109.47456 * 299.99732 * 9 8 7 34 34 H 1.08998 * 109.47706 * 59.99846 * 9 8 7 35 35 H 0.96692 * 114.00369 * 299.99654 * 12 10 9 36 36 H 1.09006 * 109.47241 * 304.99856 * 13 10 9 37 37 H 1.08999 * 109.47594 * 64.99917 * 13 10 9 38 38 H 1.00907 * 110.99636 * 303.95315 * 14 13 10 39 39 H 1.08993 * 109.47174 * 305.34351 * 15 14 13 40 40 H 1.09000 * 109.47071 * 65.34831 * 15 14 13 41 41 H 0.97004 * 120.00074 * 180.02562 * 20 19 17 42 42 H 1.09003 * 117.49836 * 359.97438 * 25 16 15 43 43 H 1.08997 * 117.49570 * 145.02128 * 25 16 15 44 44 H 1.08999 * 117.50292 * 214.97699 * 26 16 15 45 45 H 1.08999 * 117.49914 * 359.97438 * 26 16 15 46 46 H 1.07998 * 120.02706 * 179.97438 * 27 7 6 47 47 H 1.07993 * 119.97840 * 180.02562 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1097 1.4095 0.1859 5 6 3.3448 2.2096 -0.9170 6 6 3.7993 3.5033 -0.7491 7 6 4.0310 3.9956 0.5270 8 8 4.4843 5.2658 0.6946 9 6 4.7001 6.0388 -0.4876 10 6 5.2055 7.4305 -0.1019 11 1 6.0937 7.3343 0.5227 12 8 4.1868 8.1234 0.6222 13 6 5.5549 8.2153 -1.3678 14 7 6.1517 9.5050 -0.9955 15 6 6.5013 10.2873 -2.1887 16 6 7.2386 11.5597 -1.7662 17 6 8.5802 11.3471 -1.1134 18 1 8.6564 11.3061 -0.0369 19 6 9.7102 11.2050 -1.8905 20 7 9.6030 11.1286 -3.1990 21 14 11.3934 11.1211 -1.0848 22 1 11.2428 11.2297 0.3886 23 1 12.0400 9.8276 -1.4227 24 1 12.2355 12.2397 -1.5796 25 6 6.3928 12.7364 -1.2756 26 6 7.0701 12.7993 -2.6469 27 6 3.7998 3.1890 1.6318 28 6 3.3391 1.8981 1.4589 29 1 2.9716 -0.6250 0.8152 30 1 2.9715 -0.3921 -0.9495 31 1 3.1692 1.8241 -1.9105 32 1 3.9789 4.1291 -1.6107 33 1 5.4413 5.5439 -1.1152 34 1 3.7632 6.1323 -1.0368 35 1 3.3657 8.2454 0.1264 36 1 6.2665 7.6444 -1.9645 37 1 4.6495 8.3884 -1.9496 38 1 5.5369 10.0261 -0.3884 39 1 7.1448 9.6929 -2.8372 40 1 5.5920 10.5559 -2.7264 41 1 10.3980 11.0282 -3.7458 42 1 5.3110 12.6043 -1.2542 43 1 6.8068 13.3571 -0.4810 44 1 7.9293 13.4614 -2.7539 45 1 6.4342 12.7083 -3.5276 46 1 3.9799 3.5698 2.6263 47 1 3.1585 1.2699 2.3185 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566125708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:33:49 Heat of formation + Delta-G solvation = -13.924583 kcal Electronic energy + Delta-G solvation = -26423.517490 eV Core-core repulsion = 22572.341904 eV Total energy + Delta-G solvation = -3851.175587 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.57142 -38.74068 -37.60446 -36.81410 -36.49519 -33.89626 -32.76915 -31.82829 -31.47901 -30.38005 -27.69216 -26.37699 -25.28952 -23.68686 -22.78517 -21.82304 -21.50204 -20.97835 -18.99847 -18.55766 -18.03043 -17.04393 -16.71671 -16.32984 -16.05862 -15.72040 -15.23759 -14.91472 -14.72577 -14.53125 -14.30332 -14.02297 -13.77619 -13.69392 -13.45909 -13.43209 -13.27208 -13.01349 -12.65173 -12.55084 -12.06575 -11.92611 -11.79892 -11.51374 -11.38273 -11.22462 -11.17111 -10.93758 -10.78246 -10.64616 -10.43923 -10.20486 -10.10130 -9.42147 -9.38785 -8.78990 -8.49007 -8.37036 -8.06339 -7.62112 -5.95497 -3.96501 0.93115 0.97572 2.37938 2.38647 2.83813 3.25521 3.33549 3.41772 3.47346 3.78708 4.28203 4.31997 4.33895 4.46188 4.49182 4.52028 4.73087 4.80847 4.87835 4.96411 5.01773 5.11706 5.14679 5.24300 5.31722 5.35034 5.36565 5.50096 5.62872 5.83484 5.84496 5.99006 6.06505 6.11106 6.19242 6.31054 6.36892 6.47689 6.60621 6.74462 6.84954 7.11609 7.12362 7.16619 7.47754 7.54751 7.60479 7.88334 7.98477 8.12758 8.56425 9.03440 9.66686 11.14463 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.019657 B = 0.001862 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.081546 B =15034.322564 C =15583.245084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C 0.208 3.792 3 C 0.024 3.976 4 C -0.142 4.142 5 C -0.063 4.063 6 C -0.211 4.211 7 C 0.143 3.857 8 O -0.300 6.300 9 C 0.028 3.972 10 C 0.112 3.888 11 H 0.121 0.879 12 O -0.548 6.548 13 C 0.035 3.965 14 N -0.663 5.663 15 C 0.108 3.892 16 C 0.050 3.950 17 C -0.467 4.467 18 H 0.061 0.939 19 C 0.065 3.935 20 N -0.887 5.887 21 Si 0.889 3.111 22 H -0.273 1.273 23 H -0.286 1.286 24 H -0.287 1.287 25 C -0.215 4.215 26 C -0.158 4.158 27 C -0.152 4.152 28 C -0.065 4.065 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.128 0.872 32 H 0.131 0.869 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.368 0.632 36 H 0.080 0.920 37 H 0.022 0.978 38 H 0.339 0.661 39 H 0.076 0.924 40 H -0.006 1.006 41 H 0.256 0.744 42 H 0.059 0.941 43 H 0.077 0.923 44 H 0.081 0.919 45 H 0.059 0.941 46 H 0.134 0.866 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.106 -20.071 3.816 23.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.113 5.113 2 C -0.110 4.110 3 C -0.016 4.016 4 C -0.144 4.144 5 C -0.081 4.081 6 C -0.230 4.230 7 C 0.097 3.903 8 O -0.213 6.213 9 C -0.048 4.048 10 C 0.052 3.948 11 H 0.139 0.861 12 O -0.352 6.352 13 C -0.096 4.096 14 N -0.294 5.294 15 C -0.020 4.020 16 C 0.049 3.951 17 C -0.505 4.505 18 H 0.079 0.921 19 C -0.136 4.136 20 N -0.525 5.525 21 Si 0.717 3.283 22 H -0.197 1.197 23 H -0.212 1.212 24 H -0.213 1.213 25 C -0.252 4.252 26 C -0.197 4.197 27 C -0.171 4.171 28 C -0.083 4.083 29 H 0.136 0.864 30 H 0.135 0.865 31 H 0.145 0.855 32 H 0.149 0.851 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.214 0.786 36 H 0.098 0.902 37 H 0.040 0.960 38 H 0.157 0.843 39 H 0.094 0.906 40 H 0.012 0.988 41 H 0.066 0.934 42 H 0.078 0.922 43 H 0.096 0.904 44 H 0.100 0.900 45 H 0.078 0.922 46 H 0.152 0.848 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -12.548 -20.233 4.357 24.204 hybrid contribution 0.133 0.240 -0.901 0.942 sum -12.415 -19.994 3.455 23.787 Atomic orbital electron populations 1.81250 1.13046 1.08314 1.08672 1.29170 0.95151 0.93282 0.93383 1.18082 0.81555 0.95668 1.06302 1.19263 1.06095 0.95196 0.93798 1.20840 0.96005 0.92864 0.98420 1.21301 1.07498 0.97816 0.96354 1.19192 0.92858 0.84512 0.93753 1.86182 1.79674 1.21600 1.33799 1.23692 1.01150 0.93221 0.86730 1.22071 0.91838 0.86087 0.94756 0.86131 1.86693 1.25725 1.78587 1.44230 1.22455 0.97935 0.94178 0.94989 1.60160 1.46691 1.03752 1.18793 1.21558 0.95180 0.95626 0.89647 1.18831 0.94191 0.84605 0.97426 1.20360 0.89150 1.48428 0.92565 0.92121 1.24951 0.98773 0.95086 0.94804 1.70019 1.28611 1.50115 1.03781 0.86593 0.84575 0.77333 0.79817 1.19727 1.21250 1.21304 1.22994 0.96150 1.07611 0.98455 1.22522 1.00896 1.05017 0.91219 1.20474 1.04898 0.93677 0.98037 1.20856 0.96308 0.94601 0.96539 0.86439 0.86502 0.85451 0.85133 0.90659 0.91775 0.78613 0.90165 0.96027 0.84324 0.90574 0.98811 0.93421 0.92197 0.90445 0.90031 0.92202 0.84760 0.85030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -4.71 18.54 42.15 0.78 -3.93 16 2 C 0.21 1.48 15.42 -20.76 -0.32 1.16 16 3 C 0.02 0.07 5.83 -30.67 -0.18 -0.11 16 4 C -0.14 -0.83 5.09 -104.60 -0.53 -1.36 16 5 C -0.06 -0.42 9.69 -39.60 -0.38 -0.81 16 6 C -0.21 -1.78 9.04 -39.43 -0.36 -2.14 16 7 C 0.14 1.45 6.69 -39.22 -0.26 1.19 16 8 O -0.30 -3.52 10.10 -24.28 -0.25 -3.77 16 9 C 0.03 0.28 4.37 37.16 0.16 0.45 16 10 C 0.11 1.40 3.49 -26.73 -0.09 1.31 16 11 H 0.12 1.75 8.14 -51.93 -0.42 1.33 16 12 O -0.55 -7.09 12.82 -40.08 -0.51 -7.61 16 13 C 0.03 0.49 5.35 -3.83 -0.02 0.47 16 14 N -0.66 -12.31 6.38 -113.78 -0.73 -13.04 16 15 C 0.11 2.32 5.51 -3.82 -0.02 2.30 16 16 C 0.05 1.21 1.55 -155.66 -0.24 0.97 16 17 C -0.47 -12.61 8.74 -34.44 -0.30 -12.91 16 18 H 0.06 1.68 7.82 -52.49 -0.41 1.27 16 19 C 0.07 1.78 5.39 -17.82 -0.10 1.68 16 20 N -0.89 -24.87 12.92 55.43 0.72 -24.16 16 21 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 22 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 C -0.21 -4.63 9.96 -26.69 -0.27 -4.89 16 26 C -0.16 -3.69 9.41 -26.70 -0.25 -3.94 16 27 C -0.15 -1.34 9.99 -39.43 -0.39 -1.73 16 28 C -0.06 -0.43 9.69 -39.60 -0.38 -0.81 16 29 H 0.12 0.07 8.08 -51.93 -0.42 -0.35 16 30 H 0.12 0.09 8.08 -51.93 -0.42 -0.33 16 31 H 0.13 0.58 8.06 -52.49 -0.42 0.15 16 32 H 0.13 0.96 6.30 -52.49 -0.33 0.63 16 33 H 0.08 0.68 7.66 -51.93 -0.40 0.28 16 34 H 0.06 0.54 7.66 -51.93 -0.40 0.14 16 35 H 0.37 3.38 9.04 45.56 0.41 3.79 16 36 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.34 6.13 8.35 -39.29 -0.33 5.80 16 39 H 0.08 1.82 8.13 -51.93 -0.42 1.40 16 40 H -0.01 -0.12 8.09 -51.93 -0.42 -0.54 16 41 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 44 H 0.08 2.03 8.14 -51.93 -0.42 1.61 16 45 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 46 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 47 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 LS Contribution 405.52 15.07 6.11 6.11 Total: -1.00 -32.99 405.52 -9.33 -42.32 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -6.50 Total: 6.98 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: -3.94 Total: -19.17 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: 0.77 Total: -41.12 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: -0.76 Total: -11.38 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.99 -9.33 -42.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566125708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.400 kcal (2) G-P(sol) polarization free energy of solvation -32.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds