Wall clock time and date at job start Sat Apr 11 2020 02:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.50704 * 109.46771 * 187.51788 * 3 2 1 5 5 C 1.38268 * 119.94153 * 269.72247 * 4 3 2 6 6 C 1.38151 * 120.05357 * 179.72674 * 5 4 3 7 7 C 1.38730 * 119.94178 * 0.57088 * 6 5 4 8 8 O 1.35900 * 120.05556 * 179.67953 * 7 6 5 9 9 C 1.42891 * 116.99901 * 0.02632 * 8 7 6 10 10 C 1.53002 * 109.47413 * 179.97438 * 9 8 7 11 11 H 1.09003 * 109.47000 * 54.99662 * 10 9 8 12 12 O 1.42906 * 109.46837 * 294.99853 * 10 9 8 13 13 C 1.52993 * 109.47481 * 174.99964 * 10 9 8 14 14 N 1.46905 * 109.47430 * 185.00222 * 13 10 9 15 15 C 1.46898 * 111.00117 * 179.97438 * 14 13 10 16 16 C 1.53002 * 109.47001 * 185.34732 * 15 14 13 17 17 C 1.50706 * 115.54750 * 65.04799 * 16 15 14 18 18 H 1.07994 * 119.99740 * 265.44238 * 17 16 15 19 19 C 1.37876 * 119.99886 * 85.44955 * 17 16 15 20 20 N 1.31513 * 119.99966 * 353.59271 * 19 17 16 21 21 Si 1.86797 * 120.00017 * 173.59539 * 19 17 16 22 22 H 1.48499 * 109.47149 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47205 * 119.99726 * 21 19 17 24 24 H 1.48500 * 109.47217 * 239.99634 * 21 19 17 25 25 C 1.53001 * 117.49868 * 279.38072 * 16 15 14 26 26 C 1.52994 * 117.50107 * 210.71859 * 16 15 14 27 27 C 1.38735 * 119.89033 * 359.70667 * 7 6 5 28 28 C 1.38147 * 119.94557 * 359.97438 * 27 7 6 29 29 H 1.08999 * 109.46858 * 307.51417 * 3 2 1 30 30 H 1.08994 * 109.46953 * 67.52094 * 3 2 1 31 31 H 1.08000 * 119.97479 * 359.97438 * 5 4 3 32 32 H 1.07993 * 120.02669 * 180.24881 * 6 5 4 33 33 H 1.09004 * 109.47456 * 299.99732 * 9 8 7 34 34 H 1.08998 * 109.47706 * 59.99846 * 9 8 7 35 35 H 0.96692 * 114.00369 * 299.99654 * 12 10 9 36 36 H 1.09006 * 109.47241 * 304.99856 * 13 10 9 37 37 H 1.08999 * 109.47594 * 64.99917 * 13 10 9 38 38 H 1.00907 * 110.99636 * 303.95315 * 14 13 10 39 39 H 1.08993 * 109.47174 * 305.34351 * 15 14 13 40 40 H 1.09000 * 109.47071 * 65.34831 * 15 14 13 41 41 H 0.97004 * 120.00074 * 180.02562 * 20 19 17 42 42 H 1.09003 * 117.49836 * 359.97438 * 25 16 15 43 43 H 1.08997 * 117.49570 * 145.02128 * 25 16 15 44 44 H 1.08999 * 117.50292 * 214.97699 * 26 16 15 45 45 H 1.08999 * 117.49914 * 359.97438 * 26 16 15 46 46 H 1.07998 * 120.02706 * 179.97438 * 27 7 6 47 47 H 1.07993 * 119.97840 * 180.02562 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1097 1.4095 0.1859 5 6 3.3448 2.2096 -0.9170 6 6 3.7993 3.5033 -0.7491 7 6 4.0310 3.9956 0.5270 8 8 4.4843 5.2658 0.6946 9 6 4.7001 6.0388 -0.4876 10 6 5.2055 7.4305 -0.1019 11 1 6.0937 7.3343 0.5227 12 8 4.1868 8.1234 0.6222 13 6 5.5549 8.2153 -1.3678 14 7 6.1517 9.5050 -0.9955 15 6 6.5013 10.2873 -2.1887 16 6 7.2386 11.5597 -1.7662 17 6 8.5802 11.3471 -1.1134 18 1 8.6564 11.3061 -0.0369 19 6 9.7102 11.2050 -1.8905 20 7 9.6030 11.1286 -3.1990 21 14 11.3934 11.1211 -1.0848 22 1 11.2428 11.2297 0.3886 23 1 12.0400 9.8276 -1.4227 24 1 12.2355 12.2397 -1.5796 25 6 6.3928 12.7364 -1.2756 26 6 7.0701 12.7993 -2.6469 27 6 3.7998 3.1890 1.6318 28 6 3.3391 1.8981 1.4589 29 1 2.9716 -0.6250 0.8152 30 1 2.9715 -0.3921 -0.9495 31 1 3.1692 1.8241 -1.9105 32 1 3.9789 4.1291 -1.6107 33 1 5.4413 5.5439 -1.1152 34 1 3.7632 6.1323 -1.0368 35 1 3.3657 8.2454 0.1264 36 1 6.2665 7.6444 -1.9645 37 1 4.6495 8.3884 -1.9496 38 1 5.5369 10.0261 -0.3884 39 1 7.1448 9.6929 -2.8372 40 1 5.5920 10.5559 -2.7264 41 1 10.3980 11.0282 -3.7458 42 1 5.3110 12.6043 -1.2542 43 1 6.8068 13.3571 -0.4810 44 1 7.9293 13.4614 -2.7539 45 1 6.4342 12.7083 -3.5276 46 1 3.9799 3.5698 2.6263 47 1 3.1585 1.2699 2.3185 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566125708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:33:48 Heat of formation + Delta-G solvation = -35.932329 kcal Electronic energy + Delta-G solvation = -26424.471818 eV Core-core repulsion = 22572.341904 eV Total energy + Delta-G solvation = -3852.129914 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.21952 -39.55656 -38.80205 -38.04646 -37.28390 -35.29760 -33.88044 -33.29148 -32.04592 -31.35601 -28.43423 -27.72214 -26.97417 -24.83052 -23.64737 -22.88677 -22.50104 -22.32402 -20.86305 -19.22417 -18.55450 -18.13610 -17.82251 -17.58096 -16.84742 -16.55886 -16.45127 -16.28245 -15.77287 -15.45207 -15.38695 -15.10613 -14.92351 -14.87598 -14.35308 -14.28227 -14.14674 -13.94708 -13.67594 -13.51873 -13.20219 -13.14900 -12.88649 -12.84275 -12.58306 -12.45106 -12.31909 -12.27972 -12.02559 -12.00594 -11.86653 -11.61549 -11.41532 -11.01023 -10.72762 -10.35731 -9.92993 -9.91340 -9.10511 -9.06000 -8.03285 -6.08811 0.37270 0.42845 1.41582 1.44868 1.55513 1.85203 1.88831 2.08262 2.48652 2.71738 3.25524 3.27074 3.38437 3.44884 3.62259 3.83437 3.93175 3.95523 3.98390 4.03771 4.07849 4.28310 4.30763 4.41956 4.44687 4.45919 4.55527 4.68277 4.70437 4.73002 4.82353 4.84754 4.89708 4.99987 5.04411 5.11324 5.13066 5.29184 5.31083 5.42784 5.61326 5.65071 5.75697 5.85177 5.89114 6.33616 6.44885 6.52235 6.67957 6.72968 6.81805 6.94390 7.56201 9.05807 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.019657 B = 0.001862 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.081546 B =15034.322564 C =15583.245084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C 0.238 3.762 3 C 0.028 3.972 4 C -0.136 4.136 5 C -0.067 4.067 6 C -0.222 4.222 7 C 0.114 3.886 8 O -0.326 6.326 9 C 0.036 3.964 10 C 0.123 3.877 11 H 0.094 0.906 12 O -0.565 6.565 13 C 0.039 3.961 14 N -0.680 5.680 15 C 0.125 3.875 16 C 0.021 3.979 17 C -0.478 4.478 18 H 0.045 0.955 19 C 0.021 3.979 20 N -0.911 5.911 21 Si 0.944 3.056 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.284 1.284 25 C -0.189 4.189 26 C -0.165 4.165 27 C -0.173 4.173 28 C -0.065 4.065 29 H 0.152 0.848 30 H 0.151 0.849 31 H 0.152 0.848 32 H 0.137 0.863 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.384 0.616 36 H 0.076 0.924 37 H 0.046 0.954 38 H 0.342 0.658 39 H 0.045 0.955 40 H 0.010 0.990 41 H 0.256 0.744 42 H 0.089 0.911 43 H 0.073 0.927 44 H 0.056 0.944 45 H 0.073 0.927 46 H 0.129 0.871 47 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.888 -22.037 3.711 25.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.187 5.187 2 C -0.079 4.079 3 C -0.011 4.011 4 C -0.138 4.138 5 C -0.085 4.085 6 C -0.240 4.240 7 C 0.068 3.932 8 O -0.239 6.239 9 C -0.040 4.040 10 C 0.063 3.937 11 H 0.112 0.888 12 O -0.371 6.371 13 C -0.091 4.091 14 N -0.311 5.311 15 C -0.004 4.004 16 C 0.020 3.980 17 C -0.516 4.516 18 H 0.063 0.937 19 C -0.178 4.178 20 N -0.550 5.550 21 Si 0.771 3.229 22 H -0.197 1.197 23 H -0.209 1.209 24 H -0.210 1.210 25 C -0.227 4.227 26 C -0.203 4.203 27 C -0.192 4.192 28 C -0.083 4.083 29 H 0.170 0.830 30 H 0.169 0.831 31 H 0.170 0.830 32 H 0.155 0.845 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.233 0.767 36 H 0.094 0.906 37 H 0.064 0.936 38 H 0.160 0.840 39 H 0.063 0.937 40 H 0.028 0.972 41 H 0.065 0.935 42 H 0.108 0.892 43 H 0.092 0.908 44 H 0.075 0.925 45 H 0.092 0.908 46 H 0.147 0.853 47 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -13.345 -22.207 4.257 26.256 hybrid contribution 0.360 0.813 -0.822 1.211 sum -12.985 -21.394 3.434 25.261 Atomic orbital electron populations 1.81287 1.15433 1.10599 1.11372 1.29858 0.95736 0.91162 0.91125 1.18441 0.78637 0.94409 1.09576 1.19553 1.04702 0.96357 0.93173 1.21222 0.95064 0.92227 1.00010 1.21484 1.07811 0.98887 0.95858 1.19472 0.94547 0.84145 0.95002 1.86114 1.80509 1.22761 1.34558 1.23549 1.02260 0.91628 0.86543 1.21777 0.91191 0.87439 0.93263 0.88841 1.86649 1.26643 1.78803 1.45049 1.22459 0.98546 0.92085 0.95991 1.60019 1.48153 1.04977 1.17989 1.21178 0.94857 0.94206 0.90186 1.18992 0.94190 0.86278 0.98522 1.20553 0.91043 1.48093 0.91950 0.93683 1.25564 1.01702 0.95169 0.95336 1.70107 1.29214 1.51083 1.04623 0.85729 0.81026 0.77293 0.78882 1.19693 1.20931 1.21006 1.22975 0.97454 1.05283 0.96948 1.22439 1.00729 1.04416 0.92702 1.20682 1.05926 0.94819 0.97727 1.21207 0.95169 0.93879 0.98019 0.82998 0.83145 0.83003 0.84479 0.89807 0.89793 0.76676 0.90599 0.93552 0.83980 0.93668 0.97199 0.93509 0.89223 0.90832 0.92529 0.90839 0.85256 0.82500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -10.50 18.54 20.01 0.37 -10.12 16 2 C 0.24 2.79 15.42 89.44 1.38 4.17 16 3 C 0.03 0.05 5.83 28.05 0.16 0.22 16 4 C -0.14 -1.17 5.09 -19.85 -0.10 -1.27 16 5 C -0.07 -0.72 9.69 22.26 0.22 -0.50 16 6 C -0.22 -3.43 9.04 22.37 0.20 -3.22 16 7 C 0.11 2.26 6.69 22.51 0.15 2.41 16 8 O -0.33 -7.70 10.10 -87.79 -0.89 -8.59 16 9 C 0.04 0.70 4.37 71.98 0.31 1.01 16 10 C 0.12 3.04 3.49 30.59 0.11 3.15 16 11 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 12 O -0.56 -14.21 12.82 -144.34 -1.85 -16.07 16 13 C 0.04 1.06 5.35 86.30 0.46 1.52 16 14 N -0.68 -24.98 6.38 -513.89 -3.28 -28.25 16 15 C 0.12 5.31 5.51 86.30 0.48 5.78 16 16 C 0.02 1.00 1.55 -52.93 -0.08 0.92 16 17 C -0.48 -26.18 8.74 25.60 0.22 -25.96 16 18 H 0.04 2.54 7.82 -2.91 -0.02 2.52 16 19 C 0.02 1.16 5.39 84.65 0.46 1.62 16 20 N -0.91 -51.82 12.92 21.45 0.28 -51.55 16 21 Si 0.94 44.24 29.54 68.60 2.03 46.27 16 22 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 23 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 24 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 25 C -0.19 -7.92 9.96 30.62 0.30 -7.62 16 26 C -0.16 -7.63 9.41 30.62 0.29 -7.34 16 27 C -0.17 -2.96 9.99 22.37 0.22 -2.73 16 28 C -0.06 -0.71 9.69 22.26 0.22 -0.49 16 29 H 0.15 -0.63 8.08 -2.39 -0.02 -0.65 16 30 H 0.15 -0.58 8.08 -2.39 -0.02 -0.60 16 31 H 0.15 0.81 8.06 -2.91 -0.02 0.79 16 32 H 0.14 1.80 6.30 -2.91 -0.02 1.78 16 33 H 0.08 1.45 7.66 -2.38 -0.02 1.43 16 34 H 0.08 1.27 7.66 -2.39 -0.02 1.25 16 35 H 0.38 6.49 9.04 -74.06 -0.67 5.82 16 36 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 37 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.34 12.07 8.35 -89.69 -0.75 11.32 16 39 H 0.04 2.18 8.13 -2.39 -0.02 2.16 16 40 H 0.01 0.39 8.09 -2.39 -0.02 0.37 16 41 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 42 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 43 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 44 H 0.06 2.87 8.14 -2.39 -0.02 2.85 16 45 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 46 H 0.13 2.18 8.06 -2.91 -0.02 2.16 16 47 H 0.16 0.81 8.06 -2.91 -0.02 0.79 16 Total: -1.00 -73.98 405.52 1.23 -72.75 By element: Atomic # 1 Polarization: 24.33 SS G_CDS: -0.43 Total: 23.90 kcal Atomic # 6 Polarization: -33.34 SS G_CDS: 5.00 Total: -28.34 kcal Atomic # 7 Polarization: -87.30 SS G_CDS: -2.63 Total: -89.93 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: -2.74 Total: -24.65 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -73.98 1.23 -72.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566125708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.819 kcal (2) G-P(sol) polarization free energy of solvation -73.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds