Wall clock time and date at job start Sat Apr 11 2020 02:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00210 * 2 1 4 4 H 1.48505 * 109.47484 * 270.00277 * 3 2 1 5 5 H 1.48502 * 109.47235 * 29.99909 * 3 2 1 6 6 H 1.48498 * 109.47282 * 150.00110 * 3 2 1 7 7 C 1.37878 * 119.99827 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99885 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99942 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47097 * 179.97438 * 9 7 2 11 11 C 1.53112 * 109.52334 * 174.99560 * 10 9 7 12 12 C 1.53036 * 109.27907 * 177.56130 * 11 10 9 13 13 N 1.46851 * 109.52342 * 300.82197 * 12 11 10 14 14 C 1.46895 * 110.99950 * 185.84207 * 13 12 11 15 15 C 1.50697 * 109.47076 * 170.00146 * 14 13 12 16 16 C 1.32569 * 120.00102 * 126.58365 * 15 14 13 17 17 C 1.47808 * 119.99880 * 7.09866 * 16 15 14 18 18 C 1.39556 * 120.14538 * 41.88906 * 17 16 15 19 19 C 1.37947 * 119.85757 * 179.97438 * 18 17 16 20 20 C 1.38372 * 120.14209 * 359.97438 * 19 18 17 21 21 C 1.38319 * 120.28854 * 0.02562 * 20 19 18 22 22 C 1.37995 * 120.13662 * 359.74452 * 21 20 19 23 23 N 1.48005 * 120.07013 * 180.27412 * 22 21 20 24 24 O 1.21800 * 120.00151 * 355.36790 * 23 22 21 25 25 O 1.21799 * 120.00088 * 175.37144 * 23 22 21 26 26 C 1.46846 * 111.19647 * 61.73955 * 13 12 11 27 27 C 1.53030 * 109.52599 * 298.25964 * 26 13 12 28 28 H 0.97008 * 119.99533 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47040 * 59.99664 * 9 7 2 30 30 H 1.08999 * 109.46926 * 299.99601 * 9 7 2 31 31 H 1.08999 * 109.51875 * 54.87446 * 10 9 7 32 32 H 1.09002 * 109.50020 * 57.61820 * 11 10 9 33 33 H 1.09005 * 109.53759 * 297.52662 * 11 10 9 34 34 H 1.09000 * 109.46374 * 180.80841 * 12 11 10 35 35 H 1.08998 * 109.45398 * 60.83460 * 12 11 10 36 36 H 1.09006 * 109.46854 * 289.99784 * 14 13 12 37 37 H 1.08997 * 109.47143 * 49.99753 * 14 13 12 38 38 H 1.08002 * 120.00144 * 306.58366 * 15 14 13 39 39 H 1.08004 * 119.99934 * 187.09241 * 16 15 14 40 40 H 1.08002 * 120.07079 * 359.95296 * 18 17 16 41 41 H 1.08006 * 119.92989 * 179.97438 * 19 18 17 42 42 H 1.08000 * 119.85420 * 179.97438 * 20 19 18 43 43 H 1.07992 * 119.93277 * 179.97438 * 21 20 19 44 44 H 1.09006 * 109.45634 * 58.27750 * 26 13 12 45 45 H 1.09003 * 109.46091 * 178.24093 * 26 13 12 46 46 H 1.09002 * 109.50329 * 299.23990 * 27 26 13 47 47 H 1.08997 * 109.53564 * 179.13722 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0001 11 6 5.5475 -2.6399 -0.1254 12 6 6.0565 -4.0818 -0.0637 13 7 5.6506 -4.6915 1.2091 14 6 6.2387 -6.0287 1.3634 15 6 6.0076 -6.5200 2.7692 16 6 5.4367 -7.6988 2.9739 17 6 5.1700 -8.5990 1.8323 18 6 6.1231 -8.7547 0.8249 19 6 5.8682 -9.5968 -0.2375 20 6 4.6707 -10.2867 -0.3055 21 6 3.7218 -10.1369 0.6897 22 6 3.9665 -9.3013 1.7602 23 7 2.9527 -9.1467 2.8273 24 8 1.8680 -9.6903 2.7201 25 8 3.2029 -8.4758 3.8126 26 6 4.1881 -4.7424 1.3309 27 6 3.6234 -3.3203 1.3109 28 1 -0.4850 0.8402 -0.0004 29 1 3.8745 -0.6808 0.8905 30 1 3.8752 -0.6797 -0.8895 31 1 3.5859 -3.1768 -0.8406 32 1 5.9810 -2.0655 0.6934 33 1 5.8361 -2.1923 -1.0765 34 1 7.1439 -4.0866 -0.1383 35 1 5.6333 -4.6518 -0.8908 36 1 5.7712 -6.7149 0.6572 37 1 7.3098 -5.9794 1.1672 38 1 6.3070 -5.9117 3.6099 39 1 5.1666 -8.0014 3.9749 40 1 7.0582 -8.2167 0.8769 41 1 6.6049 -9.7178 -1.0180 42 1 4.4758 -10.9445 -1.1396 43 1 2.7890 -10.6779 0.6306 44 1 3.7739 -5.3095 0.4973 45 1 3.9186 -5.2271 2.2693 46 1 4.0267 -2.7567 2.1523 47 1 2.5367 -3.3585 1.3859 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571405445.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:33:51 Heat of formation + Delta-G solvation = 38.140665 kcal Electronic energy + Delta-G solvation = -28242.248161 eV Core-core repulsion = 24393.330293 eV Total energy + Delta-G solvation = -3848.917868 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.34149 -40.07997 -38.84957 -36.79853 -35.85460 -33.93712 -32.47201 -32.11409 -30.65741 -30.29795 -28.65553 -26.74444 -25.90852 -23.73217 -22.96462 -22.67157 -22.44184 -20.48651 -20.26043 -19.02865 -18.83965 -18.54505 -17.64839 -16.75207 -16.67217 -16.21285 -15.60536 -15.37015 -15.06985 -14.52200 -14.36150 -14.24701 -13.67232 -13.62805 -13.33998 -12.97949 -12.87396 -12.70796 -12.39090 -12.28269 -11.93313 -11.86174 -11.66962 -11.46780 -11.33085 -11.24331 -10.98167 -10.91136 -10.75184 -10.55865 -10.23393 -10.17753 -9.94371 -9.70778 -9.59810 -9.27659 -9.02025 -8.94976 -8.49150 -8.17997 -5.99843 -3.96960 -0.45217 0.37550 1.11717 1.25350 1.87390 2.93183 3.33082 3.40835 3.45021 3.94064 3.97978 4.02897 4.23239 4.45927 4.49056 4.52983 4.69202 4.78215 5.02107 5.13435 5.18891 5.22407 5.27486 5.33115 5.37895 5.43065 5.50180 5.61568 5.62904 5.72496 5.79828 5.85948 5.89536 6.01996 6.13790 6.19894 6.24403 6.31669 6.34893 6.46461 6.55132 6.84695 6.94890 7.04358 7.18296 7.24454 7.33311 7.51936 7.53667 7.84913 8.58992 9.05242 9.63154 11.13620 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.014604 B = 0.002873 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.826952 B = 9744.314185 C =10544.704204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.879 3.121 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.515 4.515 8 H 0.072 0.928 9 C -0.008 4.008 10 C -0.073 4.073 11 C -0.114 4.114 12 C 0.060 3.940 13 N -0.531 5.531 14 C 0.061 3.939 15 C -0.091 4.091 16 C -0.156 4.156 17 C 0.025 3.975 18 C -0.116 4.116 19 C -0.069 4.069 20 C -0.125 4.125 21 C -0.054 4.054 22 C -0.045 4.045 23 N 0.033 4.967 24 O -0.168 6.168 25 O -0.150 6.150 26 C 0.057 3.943 27 C -0.100 4.100 28 H 0.262 0.738 29 H 0.016 0.984 30 H 0.009 0.991 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.028 0.972 36 H 0.045 0.955 37 H 0.084 0.916 38 H 0.133 0.867 39 H 0.152 0.848 40 H 0.148 0.852 41 H 0.143 0.857 42 H 0.146 0.854 43 H 0.153 0.847 44 H 0.023 0.977 45 H 0.068 0.932 46 H 0.064 0.936 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.165 -22.223 0.568 28.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.706 3.294 4 H -0.205 1.205 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.553 4.553 8 H 0.090 0.910 9 C -0.045 4.045 10 C -0.092 4.092 11 C -0.152 4.152 12 C -0.067 4.067 13 N -0.256 5.256 14 C -0.066 4.066 15 C -0.109 4.109 16 C -0.175 4.175 17 C 0.024 3.976 18 C -0.135 4.135 19 C -0.087 4.087 20 C -0.143 4.143 21 C -0.073 4.073 22 C -0.128 4.128 23 N 0.551 4.449 24 O -0.381 6.381 25 O -0.367 6.367 26 C -0.070 4.070 27 C -0.138 4.138 28 H 0.072 0.928 29 H 0.035 0.965 30 H 0.028 0.972 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.046 0.954 36 H 0.062 0.938 37 H 0.103 0.897 38 H 0.151 0.849 39 H 0.169 0.831 40 H 0.166 0.834 41 H 0.161 0.839 42 H 0.164 0.836 43 H 0.170 0.830 44 H 0.041 0.959 45 H 0.087 0.913 46 H 0.082 0.918 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 17.648 -21.881 0.419 28.114 hybrid contribution -0.370 0.445 -0.451 0.734 sum 17.278 -21.436 -0.032 27.532 Atomic orbital electron populations 1.69925 1.06288 1.26758 1.51458 1.25036 0.94697 0.99113 0.94731 0.86797 0.80435 0.83785 0.78366 1.20470 1.21487 1.18981 1.21152 0.89521 0.94289 1.50319 0.91040 1.19601 0.97094 0.91705 0.96120 1.21051 0.92407 0.98890 0.96814 1.21726 0.97625 0.94360 1.01504 1.22090 0.99264 0.96363 0.89002 1.61921 1.10344 1.18783 1.34545 1.21642 1.00195 0.90733 0.94044 1.23445 0.93731 0.95083 0.98675 1.22032 1.02145 0.95602 0.97735 1.19053 0.90354 0.93189 0.95003 1.21497 0.99612 0.99163 0.93202 1.21566 0.96884 0.92975 0.97244 1.21243 0.93253 1.00970 0.98849 1.21034 1.00761 0.94779 0.90742 1.21251 0.91205 1.07519 0.92838 1.43506 1.01374 0.98607 1.01437 1.94544 1.10192 1.48400 1.84992 1.94505 1.84282 1.37080 1.20820 1.22204 0.85883 0.99052 0.99862 1.21546 1.01155 0.92691 0.98387 0.92843 0.96526 0.97249 0.92593 0.91484 0.92056 0.91502 0.95400 0.93755 0.89740 0.84886 0.83094 0.83436 0.83924 0.83639 0.82951 0.95857 0.91311 0.91755 0.90377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.28 13.96 55.43 0.77 -27.51 16 2 C 0.06 1.91 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 22.04 27.47 -169.99 -4.67 17.37 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 7 C -0.51 -14.69 9.00 -34.44 -0.31 -15.00 16 8 H 0.07 2.20 7.32 -52.49 -0.38 1.81 16 9 C -0.01 -0.19 3.52 -27.88 -0.10 -0.29 16 10 C -0.07 -1.45 2.20 -90.50 -0.20 -1.64 16 11 C -0.11 -1.83 5.38 -26.65 -0.14 -1.98 16 12 C 0.06 0.80 5.46 -3.83 -0.02 0.78 16 13 N -0.53 -7.19 4.65 -236.12 -1.10 -8.29 16 14 C 0.06 0.62 3.83 -4.98 -0.02 0.61 16 15 C -0.09 -0.90 8.47 -36.22 -0.31 -1.20 16 16 C -0.16 -1.58 8.19 -37.58 -0.31 -1.89 16 17 C 0.03 0.25 5.05 -105.01 -0.53 -0.28 16 18 C -0.12 -0.83 7.34 -39.20 -0.29 -1.11 16 19 C -0.07 -0.38 10.03 -39.64 -0.40 -0.78 16 20 C -0.12 -0.74 10.04 -39.50 -0.40 -1.14 16 21 C -0.05 -0.46 9.55 -39.64 -0.38 -0.84 16 22 C -0.04 -0.50 6.87 -79.57 -0.55 -1.04 16 23 N 0.03 0.45 4.45 34.15 0.15 0.60 16 24 O -0.17 -2.44 18.46 -29.46 -0.54 -2.99 16 25 O -0.15 -2.17 15.61 -29.46 -0.46 -2.63 16 26 C 0.06 0.92 5.31 -3.84 -0.02 0.89 16 27 C -0.10 -1.91 5.15 -26.65 -0.14 -2.05 16 28 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 29 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 30 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.07 0.75 8.02 -51.93 -0.42 0.33 16 35 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.04 0.46 4.87 -51.93 -0.25 0.21 16 37 H 0.08 0.70 7.94 -51.93 -0.41 0.29 16 38 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 39 H 0.15 1.56 6.30 -52.48 -0.33 1.23 16 40 H 0.15 0.79 6.71 -52.49 -0.35 0.44 16 41 H 0.14 0.37 8.06 -52.48 -0.42 -0.05 16 42 H 0.15 0.46 8.06 -52.49 -0.42 0.04 16 43 H 0.15 1.13 7.61 -52.49 -0.40 0.73 16 44 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.07 1.09 7.10 -51.93 -0.37 0.72 16 46 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 47 H 0.08 1.68 7.05 -51.93 -0.37 1.31 16 LS Contribution 375.24 15.07 5.65 5.65 Total: -1.00 -33.09 375.24 -11.41 -44.50 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -7.02 Total: -1.58 kcal Atomic # 6 Polarization: -20.94 SS G_CDS: -4.20 Total: -25.13 kcal Atomic # 7 Polarization: -35.02 SS G_CDS: -0.17 Total: -35.19 kcal Atomic # 8 Polarization: -4.62 SS G_CDS: -1.00 Total: -5.62 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.67 Total: 17.37 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.09 -11.41 -44.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571405445.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.636 kcal (2) G-P(sol) polarization free energy of solvation -33.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds