Wall clock time and date at job start Sat Apr 11 2020 02:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00210 * 2 1 4 4 H 1.48505 * 109.47484 * 270.00277 * 3 2 1 5 5 H 1.48502 * 109.47235 * 29.99909 * 3 2 1 6 6 H 1.48498 * 109.47282 * 150.00110 * 3 2 1 7 7 C 1.37878 * 119.99827 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99885 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99942 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47097 * 179.97438 * 9 7 2 11 11 C 1.53112 * 109.52334 * 174.99560 * 10 9 7 12 12 C 1.53036 * 109.27907 * 177.56130 * 11 10 9 13 13 N 1.46851 * 109.52342 * 300.82197 * 12 11 10 14 14 C 1.46895 * 110.99950 * 185.84207 * 13 12 11 15 15 C 1.50697 * 109.47076 * 170.00146 * 14 13 12 16 16 C 1.32569 * 120.00102 * 126.58365 * 15 14 13 17 17 C 1.47808 * 119.99880 * 7.09866 * 16 15 14 18 18 C 1.39556 * 120.14538 * 41.88906 * 17 16 15 19 19 C 1.37947 * 119.85757 * 179.97438 * 18 17 16 20 20 C 1.38372 * 120.14209 * 359.97438 * 19 18 17 21 21 C 1.38319 * 120.28854 * 0.02562 * 20 19 18 22 22 C 1.37995 * 120.13662 * 359.74452 * 21 20 19 23 23 N 1.48005 * 120.07013 * 180.27412 * 22 21 20 24 24 O 1.21800 * 120.00151 * 355.36790 * 23 22 21 25 25 O 1.21799 * 120.00088 * 175.37144 * 23 22 21 26 26 C 1.46846 * 111.19647 * 61.73955 * 13 12 11 27 27 C 1.53030 * 109.52599 * 298.25964 * 26 13 12 28 28 H 0.97008 * 119.99533 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47040 * 59.99664 * 9 7 2 30 30 H 1.08999 * 109.46926 * 299.99601 * 9 7 2 31 31 H 1.08999 * 109.51875 * 54.87446 * 10 9 7 32 32 H 1.09002 * 109.50020 * 57.61820 * 11 10 9 33 33 H 1.09005 * 109.53759 * 297.52662 * 11 10 9 34 34 H 1.09000 * 109.46374 * 180.80841 * 12 11 10 35 35 H 1.08998 * 109.45398 * 60.83460 * 12 11 10 36 36 H 1.09006 * 109.46854 * 289.99784 * 14 13 12 37 37 H 1.08997 * 109.47143 * 49.99753 * 14 13 12 38 38 H 1.08002 * 120.00144 * 306.58366 * 15 14 13 39 39 H 1.08004 * 119.99934 * 187.09241 * 16 15 14 40 40 H 1.08002 * 120.07079 * 359.95296 * 18 17 16 41 41 H 1.08006 * 119.92989 * 179.97438 * 19 18 17 42 42 H 1.08000 * 119.85420 * 179.97438 * 20 19 18 43 43 H 1.07992 * 119.93277 * 179.97438 * 21 20 19 44 44 H 1.09006 * 109.45634 * 58.27750 * 26 13 12 45 45 H 1.09003 * 109.46091 * 178.24093 * 26 13 12 46 46 H 1.09002 * 109.50329 * 299.23990 * 27 26 13 47 47 H 1.08997 * 109.53564 * 179.13722 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0001 11 6 5.5475 -2.6399 -0.1254 12 6 6.0565 -4.0818 -0.0637 13 7 5.6506 -4.6915 1.2091 14 6 6.2387 -6.0287 1.3634 15 6 6.0076 -6.5200 2.7692 16 6 5.4367 -7.6988 2.9739 17 6 5.1700 -8.5990 1.8323 18 6 6.1231 -8.7547 0.8249 19 6 5.8682 -9.5968 -0.2375 20 6 4.6707 -10.2867 -0.3055 21 6 3.7218 -10.1369 0.6897 22 6 3.9665 -9.3013 1.7602 23 7 2.9527 -9.1467 2.8273 24 8 1.8680 -9.6903 2.7201 25 8 3.2029 -8.4758 3.8126 26 6 4.1881 -4.7424 1.3309 27 6 3.6234 -3.3203 1.3109 28 1 -0.4850 0.8402 -0.0004 29 1 3.8745 -0.6808 0.8905 30 1 3.8752 -0.6797 -0.8895 31 1 3.5859 -3.1768 -0.8406 32 1 5.9810 -2.0655 0.6934 33 1 5.8361 -2.1923 -1.0765 34 1 7.1439 -4.0866 -0.1383 35 1 5.6333 -4.6518 -0.8908 36 1 5.7712 -6.7149 0.6572 37 1 7.3098 -5.9794 1.1672 38 1 6.3070 -5.9117 3.6099 39 1 5.1666 -8.0014 3.9749 40 1 7.0582 -8.2167 0.8769 41 1 6.6049 -9.7178 -1.0180 42 1 4.4758 -10.9445 -1.1396 43 1 2.7890 -10.6779 0.6306 44 1 3.7739 -5.3095 0.4973 45 1 3.9186 -5.2271 2.2693 46 1 4.0267 -2.7567 2.1523 47 1 2.5367 -3.3585 1.3859 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571405445.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:33:50 Heat of formation + Delta-G solvation = 19.331631 kcal Electronic energy + Delta-G solvation = -28243.063782 eV Core-core repulsion = 24393.330293 eV Total energy + Delta-G solvation = -3849.733489 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.29298 -40.81918 -39.97799 -37.81151 -36.96484 -35.32779 -34.05977 -33.05583 -31.80801 -31.31371 -30.15687 -27.72992 -27.01455 -25.03753 -24.15135 -23.53527 -23.45705 -22.05102 -21.06021 -20.50859 -19.79891 -19.32283 -18.88607 -18.63040 -17.48096 -16.93258 -16.48880 -16.34878 -16.14808 -15.82793 -15.47751 -15.30453 -15.19141 -14.70652 -14.63393 -14.24455 -13.98883 -13.83965 -13.47517 -13.32673 -13.29533 -12.95602 -12.86830 -12.65272 -12.56326 -12.38431 -12.33479 -12.21484 -12.10831 -11.98466 -11.77717 -11.66149 -11.28210 -10.99141 -10.94740 -10.80562 -10.72843 -10.56442 -9.68620 -9.20658 -8.28015 -6.31033 -1.30030 -0.20397 0.28205 0.41918 1.15767 1.34291 1.37167 1.49254 2.34609 2.36605 2.97578 3.07482 3.31463 3.38246 3.75532 3.87189 3.94190 3.95042 3.98284 4.01939 4.07891 4.14523 4.30743 4.35676 4.44153 4.55274 4.57614 4.65143 4.69853 4.75126 4.78159 4.91069 4.95264 4.99384 5.01247 5.07688 5.10992 5.19950 5.23189 5.29318 5.35494 5.47643 5.49408 5.51905 5.55795 5.69404 5.72330 6.08594 6.19221 6.31549 6.46337 6.76431 7.32885 8.89083 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.014604 B = 0.002873 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.826952 B = 9744.314185 C =10544.704204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.001 4.001 3 Si 0.952 3.048 4 H -0.265 1.265 5 H -0.286 1.286 6 H -0.246 1.246 7 C -0.522 4.522 8 H 0.027 0.973 9 C -0.005 4.005 10 C -0.071 4.071 11 C -0.108 4.108 12 C 0.064 3.936 13 N -0.536 5.536 14 C 0.064 3.936 15 C -0.093 4.093 16 C -0.160 4.160 17 C 0.008 3.992 18 C -0.116 4.116 19 C -0.051 4.051 20 C -0.115 4.115 21 C -0.067 4.067 22 C -0.074 4.074 23 N 0.034 4.966 24 O -0.200 6.200 25 O -0.178 6.178 26 C 0.074 3.926 27 C -0.096 4.096 28 H 0.265 0.735 29 H 0.017 0.983 30 H 0.018 0.982 31 H 0.039 0.961 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.105 0.895 35 H 0.030 0.970 36 H 0.049 0.951 37 H 0.119 0.881 38 H 0.135 0.865 39 H 0.139 0.861 40 H 0.172 0.828 41 H 0.186 0.814 42 H 0.180 0.820 43 H 0.154 0.846 44 H 0.013 0.987 45 H 0.064 0.936 46 H 0.059 0.941 47 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.867 -22.510 -1.562 31.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.197 4.197 3 Si 0.775 3.225 4 H -0.190 1.190 5 H -0.212 1.212 6 H -0.169 1.169 7 C -0.560 4.560 8 H 0.046 0.954 9 C -0.042 4.042 10 C -0.089 4.089 11 C -0.146 4.146 12 C -0.063 4.063 13 N -0.261 5.261 14 C -0.063 4.063 15 C -0.111 4.111 16 C -0.179 4.179 17 C 0.006 3.994 18 C -0.134 4.134 19 C -0.069 4.069 20 C -0.133 4.133 21 C -0.086 4.086 22 C -0.158 4.158 23 N 0.545 4.455 24 O -0.408 6.408 25 O -0.391 6.391 26 C -0.054 4.054 27 C -0.134 4.134 28 H 0.073 0.927 29 H 0.035 0.965 30 H 0.036 0.964 31 H 0.058 0.942 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.123 0.877 35 H 0.048 0.952 36 H 0.066 0.934 37 H 0.137 0.863 38 H 0.153 0.847 39 H 0.156 0.844 40 H 0.189 0.811 41 H 0.203 0.797 42 H 0.198 0.802 43 H 0.172 0.828 44 H 0.031 0.969 45 H 0.082 0.918 46 H 0.078 0.922 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 22.343 -22.192 -1.688 31.537 hybrid contribution -1.837 0.403 0.132 1.886 sum 20.506 -21.789 -1.557 29.961 Atomic orbital electron populations 1.70094 1.08395 1.27999 1.53182 1.26061 0.95604 1.03630 0.94362 0.85633 0.79500 0.78158 0.79198 1.19028 1.21230 1.16920 1.21481 0.92229 0.92716 1.49592 0.95440 1.19561 0.93708 0.94702 0.96217 1.20968 0.95762 0.95961 0.96232 1.21654 0.93736 0.96887 1.02328 1.22109 1.01343 0.94158 0.88702 1.61863 1.07980 1.21179 1.35034 1.21758 1.01831 0.88720 0.93949 1.23453 0.93935 0.94803 0.98958 1.22005 1.01956 0.96200 0.97712 1.19259 0.90655 0.93517 0.95945 1.21856 0.99572 0.99422 0.92548 1.22116 0.97054 0.90646 0.97056 1.21721 0.92514 1.00659 0.98453 1.21326 1.01882 0.94557 0.90797 1.21558 0.91198 1.10026 0.92980 1.44000 1.01736 0.97879 1.01919 1.94505 1.11603 1.49252 1.85469 1.94475 1.84498 1.37899 1.22241 1.21874 0.88107 0.96147 0.99273 1.21411 0.98740 0.95123 0.98153 0.92672 0.96475 0.96359 0.94208 0.91397 0.90621 0.87676 0.95203 0.93350 0.86336 0.84674 0.84384 0.81068 0.79716 0.80229 0.82804 0.96896 0.91755 0.92176 0.94561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.94 13.96 21.45 0.30 -61.64 16 2 C 0.00 -0.04 5.47 84.65 0.46 0.42 16 3 Si 0.95 45.45 27.47 68.60 1.88 47.33 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 6 H -0.25 -10.88 6.54 99.48 0.65 -10.22 16 7 C -0.52 -30.97 9.00 25.60 0.23 -30.74 16 8 H 0.03 1.81 7.32 -2.91 -0.02 1.79 16 9 C 0.00 -0.22 3.52 29.85 0.11 -0.11 16 10 C -0.07 -2.79 2.20 -10.72 -0.02 -2.81 16 11 C -0.11 -3.16 5.38 30.64 0.16 -2.99 16 12 C 0.06 1.45 5.46 86.32 0.47 1.92 16 13 N -0.54 -13.07 4.65 -900.94 -4.19 -17.25 16 14 C 0.06 1.08 3.83 85.56 0.33 1.40 16 15 C -0.09 -1.69 8.47 24.53 0.21 -1.48 16 16 C -0.16 -3.20 8.19 23.65 0.19 -3.01 16 17 C 0.01 0.14 5.05 -20.12 -0.10 0.04 16 18 C -0.12 -1.21 7.34 22.52 0.17 -1.05 16 19 C -0.05 -0.31 10.03 22.23 0.22 -0.09 16 20 C -0.12 -0.95 10.04 22.32 0.22 -0.72 16 21 C -0.07 -1.07 9.55 22.23 0.21 -0.86 16 22 C -0.07 -1.66 6.87 36.63 0.25 -1.41 16 23 N 0.03 1.01 4.45 -45.87 -0.20 0.80 16 24 O -0.20 -6.35 18.46 18.89 0.35 -6.01 16 25 O -0.18 -5.64 15.61 18.89 0.29 -5.34 16 26 C 0.07 2.37 5.31 86.32 0.46 2.83 16 27 C -0.10 -3.81 5.15 30.64 0.16 -3.66 16 28 H 0.26 15.99 8.31 -92.70 -0.77 15.22 16 29 H 0.02 0.81 7.20 -2.39 -0.02 0.79 16 30 H 0.02 0.84 7.57 -2.39 -0.02 0.82 16 31 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.08 2.00 8.14 -2.38 -0.02 1.99 16 34 H 0.11 1.68 8.02 -2.39 -0.02 1.66 16 35 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.05 0.82 4.87 -2.38 -0.01 0.81 16 37 H 0.12 1.27 7.94 -2.39 -0.02 1.25 16 38 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 39 H 0.14 3.06 6.30 -2.91 -0.02 3.05 16 40 H 0.17 0.95 6.71 -2.91 -0.02 0.93 16 41 H 0.19 -0.35 8.06 -2.91 -0.02 -0.37 16 42 H 0.18 0.25 8.06 -2.91 -0.02 0.23 16 43 H 0.15 2.30 7.61 -2.91 -0.02 2.28 16 44 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 45 H 0.06 2.10 7.10 -2.39 -0.02 2.08 16 46 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 47 H 0.04 1.69 7.05 -2.39 -0.02 1.67 16 Total: -1.00 -78.23 375.24 3.07 -75.16 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: 0.91 Total: 9.26 kcal Atomic # 6 Polarization: -46.05 SS G_CDS: 3.73 Total: -42.31 kcal Atomic # 7 Polarization: -73.99 SS G_CDS: -4.09 Total: -78.09 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: 0.64 Total: -11.35 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.88 Total: 47.33 kcal Total: -78.23 3.07 -75.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571405445.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.488 kcal (2) G-P(sol) polarization free energy of solvation -78.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds