Wall clock time and date at job start Sat Apr 11 2020 02:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86808 * 119.99649 * 2 1 4 4 H 1.48495 * 109.46909 * 240.00142 * 3 2 1 5 5 H 1.48492 * 109.47238 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46804 * 120.00491 * 3 2 1 7 7 C 1.37876 * 120.00274 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99693 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99943 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47388 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47376 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47376 * 180.02562 * 11 10 9 13 13 C 1.50695 * 109.47499 * 179.97438 * 12 11 10 14 14 O 1.21291 * 119.99966 * 5.00208 * 13 12 11 15 15 N 1.34778 * 120.00205 * 184.99098 * 13 12 11 16 16 C 1.46922 * 120.54444 * 3.53002 * 15 13 12 17 17 C 1.53431 * 107.83245 * 224.64927 * 16 15 13 18 18 C 1.52855 * 108.83511 * 296.81600 * 17 16 15 19 19 C 1.50571 * 110.51193 * 51.35756 * 18 17 16 20 20 C 1.39845 * 118.95071 * 159.33293 * 19 18 17 21 21 C 1.47863 * 120.00130 * 359.83098 * 20 19 18 22 22 N 1.34780 * 120.00018 * 175.35756 * 21 20 19 23 23 O 1.21555 * 119.99709 * 355.36592 * 21 20 19 24 24 C 1.39445 * 119.99882 * 179.85660 * 20 19 18 25 25 C 1.38018 * 119.98856 * 359.97403 * 24 20 19 26 26 C 1.38138 * 120.07510 * 0.07621 * 25 24 20 27 27 C 1.38306 * 121.57795 * 339.31297 * 19 18 17 28 28 H 0.97001 * 120.00075 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.47695 * 59.99724 * 9 7 2 30 30 H 1.09009 * 109.47442 * 299.99978 * 9 7 2 31 31 H 1.09008 * 109.46946 * 59.99535 * 10 9 7 32 32 H 1.09002 * 109.47118 * 300.00613 * 10 9 7 33 33 H 1.08997 * 109.47609 * 60.00328 * 11 10 9 34 34 H 1.09001 * 109.47635 * 299.99652 * 11 10 9 35 35 H 1.09008 * 109.46946 * 59.99652 * 12 11 10 36 36 H 1.09002 * 109.47118 * 300.00731 * 12 11 10 37 37 H 1.09001 * 109.80004 * 105.04944 * 16 15 13 38 38 H 1.09000 * 109.79913 * 344.25203 * 16 15 13 39 39 H 1.09006 * 109.57425 * 56.61831 * 17 16 15 40 40 H 1.09002 * 109.57771 * 177.00656 * 17 16 15 41 41 H 1.08995 * 109.26708 * 171.62752 * 18 17 16 42 42 H 1.09001 * 109.26564 * 291.09450 * 18 17 16 43 43 H 0.96993 * 119.99981 * 0.02562 * 22 21 20 44 44 H 0.97001 * 119.99235 * 179.97438 * 22 21 20 45 45 H 1.08005 * 120.00649 * 179.97438 * 24 20 19 46 46 H 1.08000 * 119.95971 * 180.09595 * 25 24 20 47 47 H 1.08002 * 119.82927 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 1.4805 -4.9870 -0.0012 12 6 2.4747 -6.1499 -0.0018 13 6 1.7213 -7.4550 -0.0006 14 8 0.5118 -7.4571 -0.0908 15 7 2.3915 -8.6200 0.1007 16 6 3.8487 -8.6292 0.2880 17 6 4.4373 -9.6845 -0.6577 18 6 3.9030 -11.0593 -0.2567 19 6 2.4015 -11.0305 -0.1474 20 6 1.6939 -12.2342 -0.2254 21 6 2.4204 -13.5079 -0.4161 22 7 1.7486 -14.6762 -0.3976 23 8 3.6235 -13.5012 -0.5894 24 6 0.3032 -12.2332 -0.1238 25 6 -0.3747 -11.0442 0.0543 26 6 0.3229 -9.8544 0.1304 27 6 1.7107 -9.8452 0.0280 28 1 -0.4850 0.8400 0.0004 29 1 0.6241 -2.5567 -0.8902 30 1 0.6248 -2.5571 0.8897 31 1 2.8728 -3.6046 0.8877 32 1 2.8715 -3.6038 -0.8922 33 1 0.8529 -5.0447 -0.8904 34 1 0.8548 -5.0450 0.8895 35 1 3.1021 -6.0921 0.8877 36 1 3.1008 -6.0922 -0.8922 37 1 4.0867 -8.8850 1.3205 38 1 4.2582 -7.6482 0.0471 39 1 4.1408 -9.4621 -1.6828 40 1 5.5245 -9.6783 -0.5804 41 1 4.1949 -11.7920 -1.0090 42 1 4.3283 -11.3438 0.7057 43 1 0.7885 -14.6814 -0.2595 44 1 2.2252 -15.5116 -0.5231 45 1 -0.2435 -13.1627 -0.1844 46 1 -1.4517 -11.0442 0.1345 47 1 -0.2115 -8.9263 0.2702 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588869431.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:34:14 Heat of formation + Delta-G solvation = -52.853592 kcal Electronic energy + Delta-G solvation = -27485.576054 eV Core-core repulsion = 23632.712379 eV Total energy + Delta-G solvation = -3852.863675 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.49711 -40.07086 -38.30700 -36.82697 -35.05250 -34.27449 -33.56416 -32.71717 -30.98853 -30.65218 -29.37674 -26.27475 -25.55964 -24.47898 -23.58285 -22.60178 -21.24774 -20.62553 -20.04468 -19.18701 -18.20590 -17.46696 -17.11025 -16.40839 -16.16132 -16.07964 -15.97379 -15.38391 -14.94302 -14.72730 -14.53244 -14.44230 -14.16992 -13.62344 -13.55873 -13.47839 -13.05772 -12.83928 -12.57781 -12.45529 -12.22381 -11.80820 -11.67307 -11.61985 -11.44369 -11.04633 -10.99581 -10.57918 -10.54341 -10.46215 -10.39316 -10.14796 -10.00165 -9.64142 -9.46069 -9.22280 -9.02457 -8.98621 -8.31282 -8.14457 -5.96166 -3.98838 0.59598 1.01338 2.37784 2.52390 2.67988 3.12289 3.34743 3.39271 3.41372 3.58504 4.23406 4.37862 4.42301 4.47982 4.52741 4.65358 4.70591 4.90851 4.94260 5.06209 5.13948 5.23968 5.26223 5.38925 5.39129 5.41290 5.47637 5.65058 5.72963 5.83203 5.88759 5.95814 6.06947 6.13085 6.18580 6.23911 6.27115 6.40738 6.49536 6.78640 6.83908 6.90823 6.95220 7.09138 7.17950 7.72178 7.85644 7.87774 7.95392 8.04725 8.46375 9.08534 9.64836 11.15039 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.030712 B = 0.001985 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.490631 B =14105.573423 C =14933.433556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.110 4.110 11 C -0.104 4.104 12 C -0.136 4.136 13 C 0.517 3.483 14 O -0.511 6.511 15 N -0.558 5.558 16 C 0.096 3.904 17 C -0.139 4.139 18 C -0.092 4.092 19 C -0.054 4.054 20 C -0.132 4.132 21 C 0.567 3.433 22 N -0.852 5.852 23 O -0.536 6.536 24 C -0.109 4.109 25 C -0.113 4.113 26 C -0.130 4.130 27 C 0.149 3.851 28 H 0.261 0.739 29 H 0.016 0.984 30 H 0.016 0.984 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.078 0.922 38 H 0.099 0.901 39 H 0.072 0.928 40 H 0.087 0.913 41 H 0.117 0.883 42 H 0.079 0.921 43 H 0.401 0.599 44 H 0.404 0.596 45 H 0.123 0.877 46 H 0.131 0.869 47 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.848 -30.836 0.395 31.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.148 4.148 11 C -0.142 4.142 12 C -0.176 4.176 13 C 0.309 3.691 14 O -0.387 6.387 15 N -0.281 5.281 16 C -0.025 4.025 17 C -0.177 4.177 18 C -0.128 4.128 19 C -0.058 4.058 20 C -0.136 4.136 21 C 0.355 3.645 22 N -0.416 5.416 23 O -0.415 6.415 24 C -0.129 4.129 25 C -0.131 4.131 26 C -0.150 4.150 27 C 0.055 3.945 28 H 0.070 0.930 29 H 0.034 0.966 30 H 0.034 0.966 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.112 0.888 36 H 0.115 0.885 37 H 0.097 0.903 38 H 0.118 0.882 39 H 0.091 0.909 40 H 0.106 0.894 41 H 0.134 0.866 42 H 0.097 0.903 43 H 0.231 0.769 44 H 0.235 0.765 45 H 0.141 0.859 46 H 0.149 0.851 47 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 4.858 -30.414 0.255 30.801 hybrid contribution 0.099 0.424 0.052 0.439 sum 4.957 -29.990 0.308 30.398 Atomic orbital electron populations 1.69962 1.06038 1.26639 1.50789 1.25042 0.94851 0.99230 0.95435 0.86668 0.79574 0.83245 0.78547 1.20284 1.21317 1.20294 1.21235 0.92945 0.91190 1.50600 0.92798 1.19088 0.94032 0.91231 0.97327 1.21650 0.99118 0.93857 1.00162 1.21493 0.96986 0.92614 1.03127 1.21880 1.00260 0.91139 1.04320 1.21375 0.88118 0.85125 0.74511 1.90402 1.14341 1.86092 1.47824 1.45917 1.08719 1.04168 1.69335 1.22126 0.78012 1.01758 1.00651 1.21979 1.01257 0.94667 0.99765 1.20872 0.89672 0.97826 1.04436 1.19533 0.96395 0.90376 0.99456 1.19425 0.93537 0.92484 1.08114 1.18280 0.86702 0.84156 0.75401 1.43777 1.12729 1.08547 1.76514 1.90724 1.14291 1.86903 1.49537 1.21157 0.92694 0.98610 1.00447 1.21082 1.00310 0.91694 1.00042 1.22898 0.92858 1.01912 0.97310 1.17728 0.91563 0.84844 1.00398 0.92979 0.96571 0.96586 0.93407 0.93382 0.91502 0.91730 0.88774 0.88481 0.90340 0.88230 0.90941 0.89416 0.86564 0.90284 0.76933 0.76487 0.85922 0.85075 0.80045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.31 13.29 55.43 0.74 -26.57 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -14.88 9.11 -34.44 -0.31 -15.19 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.53 4.97 -27.89 -0.14 0.39 16 10 C -0.11 -2.20 5.15 -26.73 -0.14 -2.34 16 11 C -0.10 -1.77 4.52 -26.73 -0.12 -1.89 16 12 C -0.14 -1.72 4.08 -27.88 -0.11 -1.84 16 13 C 0.52 7.10 7.61 -10.99 -0.08 7.02 16 14 O -0.51 -8.49 12.49 5.55 0.07 -8.42 16 15 N -0.56 -6.54 2.98 -112.84 -0.34 -6.88 16 16 C 0.10 0.81 6.20 -3.59 -0.02 0.79 16 17 C -0.14 -1.12 6.11 -26.58 -0.16 -1.28 16 18 C -0.09 -0.90 4.56 -28.02 -0.13 -1.03 16 19 C -0.05 -0.60 5.79 -104.06 -0.60 -1.21 16 20 C -0.13 -1.30 5.88 -104.91 -0.62 -1.92 16 21 C 0.57 5.25 8.00 -12.32 -0.10 5.16 16 22 N -0.85 -4.26 8.82 30.53 0.27 -3.99 16 23 O -0.54 -6.46 13.95 5.32 0.07 -6.39 16 24 C -0.11 -0.89 9.52 -39.21 -0.37 -1.26 16 25 C -0.11 -1.08 10.03 -39.70 -0.40 -1.48 16 26 C -0.13 -1.62 8.97 -39.28 -0.35 -1.97 16 27 C 0.15 1.84 6.32 -83.58 -0.53 1.31 16 28 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 31 H 0.05 0.91 8.14 -51.92 -0.42 0.49 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 1.22 8.05 -51.93 -0.42 0.80 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.09 1.00 7.71 -51.92 -0.40 0.60 16 36 H 0.10 1.06 7.91 -51.93 -0.41 0.65 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.10 0.68 6.14 -51.93 -0.32 0.36 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.12 1.29 5.57 -51.93 -0.29 1.00 16 42 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.40 1.00 6.87 -40.82 -0.28 0.72 16 44 H 0.40 1.46 8.93 -40.82 -0.36 1.10 16 45 H 0.12 0.55 6.41 -52.48 -0.34 0.21 16 46 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 47 H 0.18 2.61 4.70 -55.21 -0.26 2.35 16 LS Contribution 374.35 15.07 5.64 5.64 Total: -1.00 -35.22 374.35 -9.70 -44.92 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -6.85 Total: 0.16 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: -4.29 Total: -15.23 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: 0.67 Total: -37.44 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: 0.14 Total: -14.81 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.22 -9.70 -44.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588869431.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.931 kcal (2) G-P(sol) polarization free energy of solvation -35.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds