Wall clock time and date at job start Sat Apr 11 2020 02:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86808 * 119.99649 * 2 1 4 4 H 1.48495 * 109.46909 * 240.00142 * 3 2 1 5 5 H 1.48492 * 109.47238 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46804 * 120.00491 * 3 2 1 7 7 C 1.37876 * 120.00274 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99693 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99943 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47388 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47376 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47376 * 180.02562 * 11 10 9 13 13 C 1.50695 * 109.47499 * 179.97438 * 12 11 10 14 14 O 1.21291 * 119.99966 * 5.00208 * 13 12 11 15 15 N 1.34778 * 120.00205 * 184.99098 * 13 12 11 16 16 C 1.46922 * 120.54444 * 3.53002 * 15 13 12 17 17 C 1.53431 * 107.83245 * 224.64927 * 16 15 13 18 18 C 1.52855 * 108.83511 * 296.81600 * 17 16 15 19 19 C 1.50571 * 110.51193 * 51.35756 * 18 17 16 20 20 C 1.39845 * 118.95071 * 159.33293 * 19 18 17 21 21 C 1.47863 * 120.00130 * 359.83098 * 20 19 18 22 22 N 1.34780 * 120.00018 * 175.35756 * 21 20 19 23 23 O 1.21555 * 119.99709 * 355.36592 * 21 20 19 24 24 C 1.39445 * 119.99882 * 179.85660 * 20 19 18 25 25 C 1.38018 * 119.98856 * 359.97403 * 24 20 19 26 26 C 1.38138 * 120.07510 * 0.07621 * 25 24 20 27 27 C 1.38306 * 121.57795 * 339.31297 * 19 18 17 28 28 H 0.97001 * 120.00075 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.47695 * 59.99724 * 9 7 2 30 30 H 1.09009 * 109.47442 * 299.99978 * 9 7 2 31 31 H 1.09008 * 109.46946 * 59.99535 * 10 9 7 32 32 H 1.09002 * 109.47118 * 300.00613 * 10 9 7 33 33 H 1.08997 * 109.47609 * 60.00328 * 11 10 9 34 34 H 1.09001 * 109.47635 * 299.99652 * 11 10 9 35 35 H 1.09008 * 109.46946 * 59.99652 * 12 11 10 36 36 H 1.09002 * 109.47118 * 300.00731 * 12 11 10 37 37 H 1.09001 * 109.80004 * 105.04944 * 16 15 13 38 38 H 1.09000 * 109.79913 * 344.25203 * 16 15 13 39 39 H 1.09006 * 109.57425 * 56.61831 * 17 16 15 40 40 H 1.09002 * 109.57771 * 177.00656 * 17 16 15 41 41 H 1.08995 * 109.26708 * 171.62752 * 18 17 16 42 42 H 1.09001 * 109.26564 * 291.09450 * 18 17 16 43 43 H 0.96993 * 119.99981 * 0.02562 * 22 21 20 44 44 H 0.97001 * 119.99235 * 179.97438 * 22 21 20 45 45 H 1.08005 * 120.00649 * 179.97438 * 24 20 19 46 46 H 1.08000 * 119.95971 * 180.09595 * 25 24 20 47 47 H 1.08002 * 119.82927 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 1.4805 -4.9870 -0.0012 12 6 2.4747 -6.1499 -0.0018 13 6 1.7213 -7.4550 -0.0006 14 8 0.5118 -7.4571 -0.0908 15 7 2.3915 -8.6200 0.1007 16 6 3.8487 -8.6292 0.2880 17 6 4.4373 -9.6845 -0.6577 18 6 3.9030 -11.0593 -0.2567 19 6 2.4015 -11.0305 -0.1474 20 6 1.6939 -12.2342 -0.2254 21 6 2.4204 -13.5079 -0.4161 22 7 1.7486 -14.6762 -0.3976 23 8 3.6235 -13.5012 -0.5894 24 6 0.3032 -12.2332 -0.1238 25 6 -0.3747 -11.0442 0.0543 26 6 0.3229 -9.8544 0.1304 27 6 1.7107 -9.8452 0.0280 28 1 -0.4850 0.8400 0.0004 29 1 0.6241 -2.5567 -0.8902 30 1 0.6248 -2.5571 0.8897 31 1 2.8728 -3.6046 0.8877 32 1 2.8715 -3.6038 -0.8922 33 1 0.8529 -5.0447 -0.8904 34 1 0.8548 -5.0450 0.8895 35 1 3.1021 -6.0921 0.8877 36 1 3.1008 -6.0922 -0.8922 37 1 4.0867 -8.8850 1.3205 38 1 4.2582 -7.6482 0.0471 39 1 4.1408 -9.4621 -1.6828 40 1 5.5245 -9.6783 -0.5804 41 1 4.1949 -11.7920 -1.0090 42 1 4.3283 -11.3438 0.7057 43 1 0.7885 -14.6814 -0.2595 44 1 2.2252 -15.5116 -0.5231 45 1 -0.2435 -13.1627 -0.1844 46 1 -1.4517 -11.0442 0.1345 47 1 -0.2115 -8.9263 0.2702 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588869431.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:34:14 Heat of formation + Delta-G solvation = -75.985514 kcal Electronic energy + Delta-G solvation = -27486.579130 eV Core-core repulsion = 23632.712379 eV Total energy + Delta-G solvation = -3853.866751 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.34461 -40.88298 -39.17726 -37.61501 -36.68752 -34.94093 -34.64051 -34.36373 -32.13600 -31.45692 -30.69997 -27.68026 -26.65503 -25.31019 -24.66537 -23.84578 -22.30971 -21.61113 -21.43777 -19.99572 -18.95269 -18.41508 -18.18692 -17.89073 -17.23679 -17.03363 -16.79275 -16.50322 -16.20071 -15.81231 -15.65681 -15.44891 -15.12404 -14.59196 -14.48505 -14.30030 -14.20682 -14.06601 -13.68215 -13.57397 -13.48006 -13.22917 -13.18972 -12.79435 -12.45737 -12.36917 -12.21062 -12.15709 -12.09130 -11.72840 -11.37038 -11.32051 -11.19015 -11.09869 -10.82631 -10.69477 -10.53219 -10.29514 -9.79303 -8.98079 -8.17612 -6.29544 -0.18979 0.20967 1.41073 1.44750 1.44834 1.52617 1.67115 1.89501 2.42646 2.54045 2.80853 3.15066 3.36761 3.66865 3.73670 3.86635 3.93142 4.00759 4.05236 4.11196 4.16698 4.26950 4.37746 4.52270 4.54687 4.64925 4.67112 4.72351 4.79126 4.80636 4.87106 5.01022 5.11377 5.12880 5.17898 5.23027 5.33756 5.36618 5.40579 5.43229 5.49643 5.57691 5.79511 5.89381 5.92100 5.99646 6.21836 6.26592 6.41070 6.88823 6.96712 7.29480 7.39919 8.94236 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.030712 B = 0.001985 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.490631 B =14105.573423 C =14933.433556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.007 4.007 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.542 4.542 8 H 0.066 0.934 9 C 0.019 3.981 10 C -0.096 4.096 11 C -0.095 4.095 12 C -0.125 4.125 13 C 0.512 3.488 14 O -0.552 6.552 15 N -0.554 5.554 16 C 0.089 3.911 17 C -0.133 4.133 18 C -0.087 4.087 19 C -0.066 4.066 20 C -0.141 4.141 21 C 0.565 3.435 22 N -0.829 5.829 23 O -0.569 6.569 24 C -0.095 4.095 25 C -0.116 4.116 26 C -0.156 4.156 27 C 0.127 3.873 28 H 0.262 0.738 29 H -0.016 1.016 30 H -0.014 1.014 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.045 0.955 34 H 0.046 0.954 35 H 0.124 0.876 36 H 0.123 0.877 37 H 0.090 0.910 38 H 0.121 0.879 39 H 0.062 0.938 40 H 0.113 0.887 41 H 0.104 0.896 42 H 0.079 0.921 43 H 0.416 0.584 44 H 0.414 0.586 45 H 0.165 0.835 46 H 0.152 0.848 47 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.934 -32.271 0.522 33.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.204 4.204 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.580 4.580 8 H 0.084 0.916 9 C -0.018 4.018 10 C -0.133 4.133 11 C -0.133 4.133 12 C -0.164 4.164 13 C 0.304 3.696 14 O -0.431 6.431 15 N -0.277 5.277 16 C -0.031 4.031 17 C -0.170 4.170 18 C -0.124 4.124 19 C -0.070 4.070 20 C -0.145 4.145 21 C 0.351 3.649 22 N -0.394 5.394 23 O -0.450 6.450 24 C -0.114 4.114 25 C -0.134 4.134 26 C -0.176 4.176 27 C 0.032 3.968 28 H 0.071 0.929 29 H 0.003 0.997 30 H 0.004 0.996 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.142 0.858 36 H 0.141 0.859 37 H 0.109 0.891 38 H 0.139 0.861 39 H 0.081 0.919 40 H 0.131 0.869 41 H 0.122 0.878 42 H 0.097 0.903 43 H 0.248 0.752 44 H 0.247 0.753 45 H 0.183 0.817 46 H 0.169 0.831 47 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 6.954 -31.913 0.388 32.664 hybrid contribution -0.648 0.736 0.017 0.981 sum 6.306 -31.177 0.405 31.811 Atomic orbital electron populations 1.70122 1.08014 1.27763 1.51845 1.26084 0.95787 1.03692 0.94855 0.85453 0.78178 0.77808 0.79312 1.18977 1.21148 1.18928 1.21729 0.93760 0.92235 1.50254 0.91552 1.19052 0.94695 0.93732 0.94362 1.21443 0.97836 0.92589 1.01443 1.21258 0.97391 0.93323 1.01350 1.21761 0.99141 0.88560 1.06944 1.21525 0.87725 0.86045 0.74307 1.90418 1.16035 1.86762 1.49881 1.45950 1.09938 1.03457 1.68363 1.22440 0.76055 1.03110 1.01531 1.21967 1.02643 0.93442 0.98997 1.20816 0.88982 0.98583 1.04012 1.19774 0.97225 0.90472 0.99485 1.19704 0.94419 0.92600 1.07758 1.18242 0.86342 0.84849 0.75436 1.43582 1.13494 1.07711 1.74582 1.90715 1.15620 1.87378 1.51303 1.21548 0.92147 0.99710 0.97996 1.21348 1.01390 0.91280 0.99370 1.22831 0.93407 1.02217 0.99135 1.17887 0.91733 0.85427 1.01706 0.92894 0.99718 0.99609 0.91881 0.92045 0.93585 0.93483 0.85844 0.85945 0.89135 0.86071 0.91894 0.86889 0.87795 0.90269 0.75204 0.75318 0.81739 0.83053 0.82444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.70 13.29 21.45 0.28 -58.42 16 2 C -0.01 -0.41 5.46 84.65 0.46 0.06 16 3 Si 0.97 44.59 29.54 68.60 2.03 46.62 16 4 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 6 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 7 C -0.54 -31.14 9.11 25.60 0.23 -30.91 16 8 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 9 C 0.02 1.01 4.97 29.85 0.15 1.16 16 10 C -0.10 -3.79 5.15 30.59 0.16 -3.63 16 11 C -0.10 -3.29 4.52 30.59 0.14 -3.16 16 12 C -0.12 -2.98 4.08 29.85 0.12 -2.86 16 13 C 0.51 14.17 7.61 87.66 0.67 14.84 16 14 O -0.55 -19.45 12.49 -3.06 -0.04 -19.49 16 15 N -0.55 -12.79 2.98 -629.31 -1.87 -14.66 16 16 C 0.09 1.33 6.20 86.44 0.54 1.87 16 17 C -0.13 -1.93 6.11 30.69 0.19 -1.74 16 18 C -0.09 -1.66 4.56 29.76 0.14 -1.52 16 19 C -0.07 -1.45 5.79 -19.50 -0.11 -1.56 16 20 C -0.14 -2.60 5.88 -20.05 -0.12 -2.72 16 21 C 0.56 9.54 8.00 86.79 0.69 10.24 16 22 N -0.83 -6.08 8.82 -175.58 -1.55 -7.63 16 23 O -0.57 -13.25 13.95 -3.89 -0.05 -13.30 16 24 C -0.09 -1.34 9.52 22.51 0.21 -1.13 16 25 C -0.12 -2.13 10.03 22.19 0.22 -1.91 16 26 C -0.16 -4.03 8.97 22.47 0.20 -3.83 16 27 C 0.13 3.15 6.32 38.01 0.24 3.40 16 28 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 29 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 30 H -0.01 -0.86 8.14 -2.38 -0.02 -0.88 16 31 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 32 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.05 1.76 8.05 -2.39 -0.02 1.74 16 34 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.12 2.25 7.71 -2.38 -0.02 2.24 16 36 H 0.12 2.34 7.91 -2.39 -0.02 2.32 16 37 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.12 1.26 6.14 -2.39 -0.01 1.24 16 39 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 40 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.10 2.27 5.57 -2.39 -0.01 2.26 16 42 H 0.08 1.46 8.14 -2.39 -0.02 1.45 16 43 H 0.42 0.59 6.87 -92.71 -0.64 -0.04 16 44 H 0.41 1.92 8.93 -92.71 -0.83 1.09 16 45 H 0.17 0.82 6.41 -2.91 -0.02 0.80 16 46 H 0.15 2.06 8.06 -2.91 -0.02 2.03 16 47 H 0.16 4.91 4.70 -46.00 -0.22 4.69 16 Total: -1.00 -80.88 374.35 2.27 -78.61 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -0.65 Total: 11.68 kcal Atomic # 6 Polarization: -27.54 SS G_CDS: 4.13 Total: -23.41 kcal Atomic # 7 Polarization: -77.57 SS G_CDS: -3.14 Total: -80.70 kcal Atomic # 8 Polarization: -32.70 SS G_CDS: -0.09 Total: -32.79 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -80.88 2.27 -78.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588869431.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.625 kcal (2) G-P(sol) polarization free energy of solvation -80.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds