Wall clock time and date at job start Sat Apr 11 2020 02:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99697 * 2 1 4 4 H 1.48504 * 109.46781 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47055 * 299.99778 * 3 2 1 6 6 H 1.48496 * 109.47359 * 60.00004 * 3 2 1 7 7 C 1.37868 * 119.99998 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00308 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00292 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47204 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.46736 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00413 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99424 * 179.97438 * 11 10 9 14 14 C 1.46917 * 120.63478 * 359.72505 * 13 11 10 15 15 C 1.52764 * 109.01271 * 233.58245 * 14 13 11 16 16 C 1.53041 * 109.38044 * 305.58753 * 15 14 13 17 17 C 1.50696 * 109.46157 * 301.22005 * 16 15 14 18 18 N 1.34775 * 120.00465 * 172.88785 * 17 16 15 19 19 O 1.21287 * 120.00037 * 352.87825 * 17 16 15 20 20 C 1.50697 * 109.46261 * 181.25717 * 16 15 14 21 21 C 1.38238 * 120.00192 * 244.78984 * 20 16 15 22 22 C 1.38233 * 120.00034 * 179.78850 * 21 20 16 23 23 C 1.38239 * 120.00272 * 0.43274 * 22 21 20 24 24 C 1.38243 * 119.99370 * 359.81817 * 23 22 21 25 25 C 1.38231 * 120.00259 * 359.97438 * 24 23 22 26 26 C 1.53045 * 109.53975 * 61.23880 * 16 15 14 27 27 C 1.46928 * 120.62519 * 180.02562 * 13 11 10 28 28 H 0.97008 * 120.00523 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47008 * 59.99478 * 9 7 2 30 30 H 1.09000 * 109.46976 * 300.00156 * 9 7 2 31 31 H 1.09001 * 109.46515 * 60.00200 * 10 9 7 32 32 H 1.08994 * 109.46805 * 299.99855 * 10 9 7 33 33 H 1.09004 * 109.58513 * 353.41476 * 14 13 11 34 34 H 1.09000 * 109.59268 * 113.83840 * 14 13 11 35 35 H 1.08995 * 109.56899 * 185.55287 * 15 14 13 36 36 H 1.09009 * 109.38415 * 65.51101 * 15 14 13 37 37 H 0.97005 * 119.99834 * 4.99338 * 18 17 16 38 38 H 0.96999 * 120.00035 * 185.00044 * 18 17 16 39 39 H 1.08004 * 119.99817 * 359.97438 * 21 20 16 40 40 H 1.07997 * 120.00030 * 180.27314 * 22 21 20 41 41 H 1.07989 * 120.00438 * 179.83432 * 23 22 21 42 42 H 1.07998 * 119.99533 * 179.97438 * 24 23 22 43 43 H 1.08001 * 120.00172 * 180.02562 * 25 24 23 44 44 H 1.08995 * 109.50178 * 178.68817 * 26 16 15 45 45 H 1.09002 * 109.50012 * 58.58014 * 26 16 15 46 46 H 1.09001 * 109.58714 * 246.15188 * 27 13 11 47 47 H 1.08991 * 109.59207 * 6.58532 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4918 -4.9671 0.0012 12 8 0.2790 -4.9672 0.0011 13 7 2.1658 -6.1343 0.0008 14 6 3.6348 -6.1505 -0.0064 15 6 4.1174 -7.0162 -1.1689 16 6 3.4737 -8.4013 -1.0719 17 6 3.8402 -9.0342 0.2456 18 7 3.2708 -10.1983 0.6157 19 8 4.6479 -8.4961 0.9730 20 6 3.9722 -9.2667 -2.2004 21 6 3.0935 -9.7120 -3.1702 22 6 3.5517 -10.5022 -4.2077 23 6 4.8869 -10.8548 -4.2705 24 6 5.7646 -10.4138 -3.2977 25 6 5.3072 -9.6200 -2.2626 26 6 1.9521 -8.2664 -1.1669 27 6 1.4451 -7.4147 0.0008 28 1 -0.4851 0.8401 -0.0004 29 1 0.6247 -2.5571 -0.8896 30 1 0.6240 -2.5567 0.8903 31 1 2.8719 -3.6042 0.8906 32 1 2.8719 -3.6043 -0.8894 33 1 4.0108 -5.1347 -0.1285 34 1 4.0003 -6.5672 0.9322 35 1 5.2019 -7.1152 -1.1247 36 1 3.8328 -6.5479 -2.1112 37 1 2.6806 -10.6656 0.0039 38 1 3.4510 -10.5689 1.4938 39 1 2.0496 -9.4398 -3.1190 40 1 2.8661 -10.8464 -4.9678 41 1 5.2444 -11.4743 -5.0795 42 1 6.8077 -10.6895 -3.3465 43 1 5.9930 -9.2752 -1.5029 44 1 1.4956 -9.2551 -1.1212 45 1 1.6875 -7.7860 -2.1089 46 1 1.6281 -7.9370 0.9399 47 1 0.3769 -7.2329 -0.1166 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589702280.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:34:21 Heat of formation + Delta-G solvation = -57.076662 kcal Electronic energy + Delta-G solvation = -28674.445758 eV Core-core repulsion = 24821.398957 eV Total energy + Delta-G solvation = -3853.046801 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.48790 -39.29731 -38.89021 -36.68680 -34.43236 -33.47426 -33.42354 -31.81013 -31.18562 -30.46502 -30.01847 -26.36344 -25.40923 -23.96667 -23.01651 -22.32351 -22.10447 -21.13378 -19.64247 -18.71169 -17.65786 -17.40376 -16.90682 -16.56618 -15.94527 -15.52268 -15.42936 -15.15174 -15.03927 -14.67667 -14.40613 -14.24934 -13.94069 -13.90016 -13.68561 -13.23075 -12.91624 -12.90770 -12.47119 -12.36160 -12.10627 -11.92233 -11.77825 -11.56512 -11.28390 -11.13237 -10.91931 -10.88601 -10.74084 -10.52784 -10.12872 -9.92593 -9.89775 -9.56444 -9.27114 -9.12345 -9.05237 -8.92911 -8.36014 -8.27131 -5.92835 -3.96815 0.94501 1.04822 2.35449 3.15277 3.28301 3.31734 3.35130 3.42312 3.44986 3.46250 4.15646 4.31093 4.44033 4.50247 4.63481 4.66726 4.70571 4.78924 4.90592 5.11590 5.12678 5.24464 5.27140 5.41411 5.42233 5.44128 5.51905 5.57127 5.68123 5.70284 5.82056 5.85628 5.94899 6.12162 6.14122 6.17263 6.22882 6.27383 6.28898 6.50870 6.62485 6.77759 6.95933 7.01761 7.78529 7.80241 7.90598 7.98180 8.10950 8.42626 8.78995 9.11910 9.66610 11.18207 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.018222 B = 0.002654 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.251262 B =10548.824827 C =10864.249926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.525 4.525 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.129 4.129 11 C 0.514 3.486 12 O -0.536 6.536 13 N -0.623 5.623 14 C 0.098 3.902 15 C -0.106 4.106 16 C -0.035 4.035 17 C 0.536 3.464 18 N -0.853 5.853 19 O -0.532 6.532 20 C -0.075 4.075 21 C -0.114 4.114 22 C -0.118 4.118 23 C -0.120 4.120 24 C -0.117 4.117 25 C -0.109 4.109 26 C -0.124 4.124 27 C 0.108 3.892 28 H 0.260 0.740 29 H 0.023 0.977 30 H 0.023 0.977 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.401 0.599 38 H 0.401 0.599 39 H 0.130 0.870 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.078 0.922 45 H 0.086 0.914 46 H 0.058 0.942 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.821 -28.007 -6.189 30.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.563 4.563 8 H 0.074 0.926 9 C 0.000 4.000 10 C -0.169 4.169 11 C 0.305 3.695 12 O -0.412 6.412 13 N -0.359 5.359 14 C -0.025 4.025 15 C -0.145 4.145 16 C -0.038 4.038 17 C 0.321 3.679 18 N -0.416 5.416 19 O -0.407 6.407 20 C -0.075 4.075 21 C -0.132 4.132 22 C -0.136 4.136 23 C -0.138 4.138 24 C -0.135 4.135 25 C -0.127 4.127 26 C -0.163 4.163 27 C -0.015 4.015 28 H 0.069 0.931 29 H 0.041 0.959 30 H 0.041 0.959 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.112 0.888 34 H 0.106 0.894 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.229 0.771 38 H 0.232 0.768 39 H 0.148 0.852 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.141 0.859 44 H 0.097 0.903 45 H 0.105 0.895 46 H 0.077 0.923 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 9.540 -27.364 -5.833 29.561 hybrid contribution 0.334 0.366 -0.048 0.498 sum 9.874 -26.998 -5.882 29.342 Atomic orbital electron populations 1.70013 1.06049 1.26410 1.50451 1.25023 0.94818 0.99214 0.95366 0.86544 0.80058 0.83875 0.77547 1.19717 1.21046 1.21042 1.21266 0.92975 0.91003 1.51046 0.92553 1.18909 0.93175 0.89407 0.98551 1.21881 1.00715 0.91917 1.02337 1.21585 0.88361 0.85494 0.74095 1.90645 1.14399 1.87189 1.48964 1.48292 1.06608 1.05498 1.75527 1.21893 0.79588 1.01613 0.99424 1.21752 1.00856 0.91818 1.00045 1.19780 0.97417 0.95866 0.90765 1.20271 0.79811 0.80426 0.87413 1.43838 1.51884 1.24909 1.20969 1.90714 1.33217 1.62331 1.54485 1.19522 0.93946 0.98159 0.95917 1.21219 1.00051 0.97718 0.94229 1.21173 0.95866 0.98288 0.98225 1.21206 0.93737 1.00055 0.98836 1.21142 0.99797 0.97950 0.94584 1.21075 0.95053 0.97924 0.98685 1.22129 0.92160 1.00843 1.01151 1.21463 0.98940 0.84467 0.96671 0.93052 0.95876 0.95865 0.90241 0.90257 0.88798 0.89373 0.89799 0.90364 0.77097 0.76771 0.85208 0.85868 0.86093 0.85973 0.85914 0.90338 0.89537 0.92328 0.88419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.79 13.29 55.43 0.74 -27.05 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.52 -15.14 9.11 -34.44 -0.31 -15.45 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 10 C -0.13 -2.73 3.99 -27.88 -0.11 -2.84 16 11 C 0.51 10.37 7.70 -10.98 -0.08 10.29 16 12 O -0.54 -12.86 15.39 5.56 0.09 -12.77 16 13 N -0.62 -9.64 2.98 -173.06 -0.52 -10.15 16 14 C 0.10 1.30 5.92 -3.94 -0.02 1.28 16 15 C -0.11 -1.17 4.38 -26.83 -0.12 -1.29 16 16 C -0.03 -0.33 0.48 -156.77 -0.07 -0.40 16 17 C 0.54 5.38 4.59 -10.99 -0.05 5.33 16 18 N -0.85 -5.61 8.67 31.22 0.27 -5.34 16 19 O -0.53 -7.18 14.72 5.55 0.08 -7.09 16 20 C -0.08 -0.63 4.73 -104.62 -0.50 -1.12 16 21 C -0.11 -0.85 8.98 -39.58 -0.36 -1.20 16 22 C -0.12 -0.80 10.05 -39.58 -0.40 -1.20 16 23 C -0.12 -0.82 10.05 -39.58 -0.40 -1.21 16 24 C -0.12 -0.86 10.05 -39.58 -0.40 -1.26 16 25 C -0.11 -0.93 8.79 -39.58 -0.35 -1.28 16 26 C -0.12 -1.13 3.39 -26.63 -0.09 -1.23 16 27 C 0.11 1.37 6.09 -3.73 -0.02 1.34 16 28 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 29 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 30 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 31 H 0.08 1.58 7.95 -51.93 -0.41 1.16 16 32 H 0.08 1.54 7.68 -51.93 -0.40 1.14 16 33 H 0.09 1.25 5.93 -51.93 -0.31 0.94 16 34 H 0.09 1.25 5.80 -51.93 -0.30 0.95 16 35 H 0.08 0.89 7.58 -51.93 -0.39 0.49 16 36 H 0.08 0.88 8.14 -51.92 -0.42 0.45 16 37 H 0.40 1.75 8.00 -40.82 -0.33 1.43 16 38 H 0.40 2.24 8.93 -40.82 -0.36 1.88 16 39 H 0.13 0.82 5.91 -52.48 -0.31 0.51 16 40 H 0.12 0.62 8.06 -52.49 -0.42 0.19 16 41 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 42 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 43 H 0.12 1.09 7.74 -52.49 -0.41 0.68 16 44 H 0.08 0.49 6.86 -51.93 -0.36 0.13 16 45 H 0.09 0.84 7.38 -51.93 -0.38 0.46 16 46 H 0.06 0.71 7.37 -51.93 -0.38 0.32 16 47 H 0.10 1.39 7.00 -51.93 -0.36 1.03 16 LS Contribution 372.63 15.07 5.62 5.62 Total: -1.00 -36.59 372.63 -9.02 -45.62 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -6.78 Total: 1.98 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: -3.50 Total: -7.76 kcal Atomic # 7 Polarization: -43.03 SS G_CDS: 0.49 Total: -42.54 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: 0.17 Total: -19.86 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.59 -9.02 -45.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589702280.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.459 kcal (2) G-P(sol) polarization free energy of solvation -36.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds