Wall clock time and date at job start Sat Apr 11 2020 02:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99697 * 2 1 4 4 H 1.48504 * 109.46781 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47055 * 299.99778 * 3 2 1 6 6 H 1.48496 * 109.47359 * 60.00004 * 3 2 1 7 7 C 1.37868 * 119.99998 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00308 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00292 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47204 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.46736 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00413 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99424 * 179.97438 * 11 10 9 14 14 C 1.46917 * 120.63478 * 359.72505 * 13 11 10 15 15 C 1.52764 * 109.01271 * 233.58245 * 14 13 11 16 16 C 1.53041 * 109.38044 * 305.58753 * 15 14 13 17 17 C 1.50696 * 109.46157 * 301.22005 * 16 15 14 18 18 N 1.34775 * 120.00465 * 172.88785 * 17 16 15 19 19 O 1.21287 * 120.00037 * 352.87825 * 17 16 15 20 20 C 1.50697 * 109.46261 * 181.25717 * 16 15 14 21 21 C 1.38238 * 120.00192 * 244.78984 * 20 16 15 22 22 C 1.38233 * 120.00034 * 179.78850 * 21 20 16 23 23 C 1.38239 * 120.00272 * 0.43274 * 22 21 20 24 24 C 1.38243 * 119.99370 * 359.81817 * 23 22 21 25 25 C 1.38231 * 120.00259 * 359.97438 * 24 23 22 26 26 C 1.53045 * 109.53975 * 61.23880 * 16 15 14 27 27 C 1.46928 * 120.62519 * 180.02562 * 13 11 10 28 28 H 0.97008 * 120.00523 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47008 * 59.99478 * 9 7 2 30 30 H 1.09000 * 109.46976 * 300.00156 * 9 7 2 31 31 H 1.09001 * 109.46515 * 60.00200 * 10 9 7 32 32 H 1.08994 * 109.46805 * 299.99855 * 10 9 7 33 33 H 1.09004 * 109.58513 * 353.41476 * 14 13 11 34 34 H 1.09000 * 109.59268 * 113.83840 * 14 13 11 35 35 H 1.08995 * 109.56899 * 185.55287 * 15 14 13 36 36 H 1.09009 * 109.38415 * 65.51101 * 15 14 13 37 37 H 0.97005 * 119.99834 * 4.99338 * 18 17 16 38 38 H 0.96999 * 120.00035 * 185.00044 * 18 17 16 39 39 H 1.08004 * 119.99817 * 359.97438 * 21 20 16 40 40 H 1.07997 * 120.00030 * 180.27314 * 22 21 20 41 41 H 1.07989 * 120.00438 * 179.83432 * 23 22 21 42 42 H 1.07998 * 119.99533 * 179.97438 * 24 23 22 43 43 H 1.08001 * 120.00172 * 180.02562 * 25 24 23 44 44 H 1.08995 * 109.50178 * 178.68817 * 26 16 15 45 45 H 1.09002 * 109.50012 * 58.58014 * 26 16 15 46 46 H 1.09001 * 109.58714 * 246.15188 * 27 13 11 47 47 H 1.08991 * 109.59207 * 6.58532 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4918 -4.9671 0.0012 12 8 0.2790 -4.9672 0.0011 13 7 2.1658 -6.1343 0.0008 14 6 3.6348 -6.1505 -0.0064 15 6 4.1174 -7.0162 -1.1689 16 6 3.4737 -8.4013 -1.0719 17 6 3.8402 -9.0342 0.2456 18 7 3.2708 -10.1983 0.6157 19 8 4.6479 -8.4961 0.9730 20 6 3.9722 -9.2667 -2.2004 21 6 3.0935 -9.7120 -3.1702 22 6 3.5517 -10.5022 -4.2077 23 6 4.8869 -10.8548 -4.2705 24 6 5.7646 -10.4138 -3.2977 25 6 5.3072 -9.6200 -2.2626 26 6 1.9521 -8.2664 -1.1669 27 6 1.4451 -7.4147 0.0008 28 1 -0.4851 0.8401 -0.0004 29 1 0.6247 -2.5571 -0.8896 30 1 0.6240 -2.5567 0.8903 31 1 2.8719 -3.6042 0.8906 32 1 2.8719 -3.6043 -0.8894 33 1 4.0108 -5.1347 -0.1285 34 1 4.0003 -6.5672 0.9322 35 1 5.2019 -7.1152 -1.1247 36 1 3.8328 -6.5479 -2.1112 37 1 2.6806 -10.6656 0.0039 38 1 3.4510 -10.5689 1.4938 39 1 2.0496 -9.4398 -3.1190 40 1 2.8661 -10.8464 -4.9678 41 1 5.2444 -11.4743 -5.0795 42 1 6.8077 -10.6895 -3.3465 43 1 5.9930 -9.2752 -1.5029 44 1 1.4956 -9.2551 -1.1212 45 1 1.6875 -7.7860 -2.1089 46 1 1.6281 -7.9370 0.9399 47 1 0.3769 -7.2329 -0.1166 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589702280.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:34:20 Heat of formation + Delta-G solvation = -82.436218 kcal Electronic energy + Delta-G solvation = -28675.545431 eV Core-core repulsion = 24821.398957 eV Total energy + Delta-G solvation = -3854.146474 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.34227 -40.61122 -39.61285 -37.82775 -35.62347 -35.32876 -34.27109 -33.23367 -32.25345 -31.48457 -30.90439 -27.99854 -26.67493 -25.01689 -24.03597 -23.50873 -22.80632 -22.41285 -20.61752 -19.92270 -18.94908 -18.22734 -18.08302 -17.62382 -17.24499 -16.81015 -16.72454 -16.43612 -16.13822 -15.76404 -15.31561 -15.18156 -15.03150 -14.95520 -14.46804 -14.29028 -14.20027 -14.15335 -13.81182 -13.61478 -13.23793 -13.16126 -13.04459 -12.84217 -12.61198 -12.44961 -12.30081 -12.10158 -11.95631 -11.76280 -11.60131 -11.49145 -11.28566 -10.95261 -10.70983 -10.58152 -10.56280 -9.80834 -9.65449 -9.61636 -8.18372 -6.32316 0.38607 0.51021 1.41726 1.43281 1.56739 1.57759 1.66734 2.00909 2.42924 2.52920 2.87775 3.14498 3.41027 3.50173 3.66619 3.80868 3.95984 4.01605 4.14049 4.17450 4.22454 4.31632 4.37913 4.46328 4.47017 4.53999 4.57433 4.65575 4.69341 4.75355 4.78252 4.89478 4.98775 5.06844 5.09302 5.16399 5.18788 5.47439 5.59074 5.60314 5.61655 5.64220 5.65638 5.84394 5.90898 6.10407 6.17415 6.35189 6.41713 6.85651 7.23328 7.31698 7.37818 8.94588 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.018222 B = 0.002654 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.251262 B =10548.824827 C =10864.249926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.006 4.006 3 Si 0.974 3.026 4 H -0.254 1.254 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.542 4.542 8 H 0.074 0.926 9 C 0.045 3.955 10 C -0.118 4.118 11 C 0.513 3.487 12 O -0.586 6.586 13 N -0.610 5.610 14 C 0.095 3.905 15 C -0.104 4.104 16 C -0.028 4.028 17 C 0.534 3.466 18 N -0.835 5.835 19 O -0.571 6.571 20 C -0.081 4.081 21 C -0.118 4.118 22 C -0.121 4.121 23 C -0.122 4.122 24 C -0.124 4.124 25 C -0.122 4.122 26 C -0.115 4.115 27 C 0.102 3.898 28 H 0.263 0.737 29 H -0.016 1.016 30 H -0.019 1.019 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.414 0.586 38 H 0.409 0.591 39 H 0.142 0.858 40 H 0.143 0.857 41 H 0.141 0.859 42 H 0.135 0.865 43 H 0.113 0.887 44 H 0.115 0.885 45 H 0.085 0.915 46 H 0.068 0.932 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.732 -29.594 -7.409 32.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.204 4.204 3 Si 0.797 3.203 4 H -0.177 1.177 5 H -0.204 1.204 6 H -0.206 1.206 7 C -0.580 4.580 8 H 0.092 0.908 9 C 0.008 3.992 10 C -0.158 4.158 11 C 0.303 3.697 12 O -0.466 6.466 13 N -0.343 5.343 14 C -0.027 4.027 15 C -0.142 4.142 16 C -0.031 4.031 17 C 0.319 3.681 18 N -0.399 5.399 19 O -0.450 6.450 20 C -0.081 4.081 21 C -0.136 4.136 22 C -0.139 4.139 23 C -0.140 4.140 24 C -0.142 4.142 25 C -0.140 4.140 26 C -0.153 4.153 27 C -0.020 4.020 28 H 0.072 0.928 29 H 0.003 0.997 30 H 0.000 1.000 31 H 0.114 0.886 32 H 0.120 0.880 33 H 0.112 0.888 34 H 0.102 0.898 35 H 0.107 0.893 36 H 0.097 0.903 37 H 0.245 0.755 38 H 0.241 0.759 39 H 0.160 0.840 40 H 0.161 0.839 41 H 0.159 0.841 42 H 0.153 0.847 43 H 0.131 0.869 44 H 0.133 0.867 45 H 0.104 0.896 46 H 0.086 0.914 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 11.482 -29.039 -7.062 32.015 hybrid contribution -0.252 0.728 0.324 0.836 sum 11.230 -28.311 -6.738 31.193 Atomic orbital electron populations 1.70184 1.08264 1.27757 1.51513 1.26127 0.95746 1.03896 0.94604 0.85273 0.79268 0.78077 0.77632 1.17725 1.20422 1.20595 1.21722 0.93921 0.91622 1.50734 0.90810 1.18676 0.93569 0.92291 0.94708 1.21641 0.99399 0.90546 1.04165 1.21304 0.87625 0.86541 0.74233 1.90625 1.16247 1.87939 1.51755 1.48223 1.07642 1.05217 1.73264 1.22031 0.77880 1.02286 1.00499 1.21706 1.01309 0.92512 0.98676 1.19646 0.97143 0.95121 0.91195 1.20390 0.79518 0.80999 0.87243 1.43699 1.50957 1.23759 1.21483 1.90700 1.35126 1.63653 1.55565 1.19378 0.94142 0.98657 0.95946 1.21384 1.00498 0.97644 0.94042 1.21469 0.96320 0.97722 0.98340 1.21509 0.93732 0.99777 0.99008 1.21358 1.00763 0.97664 0.94379 1.21093 0.95089 0.98740 0.99110 1.22113 0.92145 1.01886 0.99203 1.21685 0.97911 0.83503 0.98914 0.92815 0.99707 1.00037 0.88603 0.88027 0.88832 0.89752 0.89269 0.90346 0.75528 0.75949 0.84038 0.83911 0.84113 0.84688 0.86905 0.86684 0.89611 0.91365 0.90098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.33 13.29 21.44 0.28 -60.05 16 2 C -0.01 -0.38 5.46 84.65 0.46 0.09 16 3 Si 0.97 45.18 29.54 68.60 2.03 47.21 16 4 H -0.25 -10.92 7.11 99.48 0.71 -10.21 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 7 C -0.54 -31.72 9.11 25.60 0.23 -31.48 16 8 H 0.07 3.97 7.74 -2.91 -0.02 3.94 16 9 C 0.05 2.60 4.26 29.85 0.13 2.73 16 10 C -0.12 -5.09 3.99 29.85 0.12 -4.97 16 11 C 0.51 21.29 7.70 87.66 0.67 21.97 16 12 O -0.59 -29.55 15.39 -3.03 -0.05 -29.60 16 13 N -0.61 -18.83 2.98 -819.81 -2.44 -21.27 16 14 C 0.09 2.48 5.92 86.22 0.51 2.99 16 15 C -0.10 -2.18 4.38 30.53 0.13 -2.04 16 16 C -0.03 -0.47 0.48 -53.65 -0.03 -0.50 16 17 C 0.53 9.92 4.59 87.66 0.40 10.33 16 18 N -0.84 -9.18 8.67 -173.53 -1.50 -10.69 16 19 O -0.57 -15.02 14.72 -3.05 -0.04 -15.06 16 20 C -0.08 -1.18 4.73 -19.87 -0.09 -1.28 16 21 C -0.12 -1.41 8.98 22.27 0.20 -1.21 16 22 C -0.12 -1.27 10.05 22.27 0.22 -1.05 16 23 C -0.12 -1.31 10.05 22.27 0.22 -1.08 16 24 C -0.12 -1.56 10.05 22.27 0.22 -1.34 16 25 C -0.12 -1.88 8.79 22.27 0.20 -1.69 16 26 C -0.12 -1.88 3.39 30.66 0.10 -1.77 16 27 C 0.10 2.52 6.09 86.35 0.53 3.05 16 28 H 0.26 15.77 8.31 -92.70 -0.77 15.00 16 29 H -0.02 -1.00 8.10 -2.39 -0.02 -1.02 16 30 H -0.02 -1.22 8.10 -2.39 -0.02 -1.24 16 31 H 0.10 3.80 7.95 -2.39 -0.02 3.78 16 32 H 0.10 3.90 7.68 -2.39 -0.02 3.88 16 33 H 0.09 2.42 5.93 -2.39 -0.01 2.41 16 34 H 0.08 2.37 5.80 -2.39 -0.01 2.35 16 35 H 0.09 1.81 7.58 -2.39 -0.02 1.79 16 36 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 37 H 0.41 2.40 8.00 -92.70 -0.74 1.66 16 38 H 0.41 3.76 8.93 -92.71 -0.83 2.93 16 39 H 0.14 1.31 5.91 -2.91 -0.02 1.29 16 40 H 0.14 0.91 8.06 -2.91 -0.02 0.89 16 41 H 0.14 0.90 8.06 -2.92 -0.02 0.87 16 42 H 0.14 1.26 8.06 -2.91 -0.02 1.24 16 43 H 0.11 1.92 7.74 -2.91 -0.02 1.90 16 44 H 0.11 1.05 6.86 -2.39 -0.02 1.03 16 45 H 0.09 1.49 7.38 -2.39 -0.02 1.47 16 46 H 0.07 1.57 7.37 -2.39 -0.02 1.55 16 47 H 0.08 2.33 7.00 -2.39 -0.02 2.31 16 Total: -1.00 -83.13 372.63 1.95 -81.18 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -0.56 Total: 15.54 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: 4.24 Total: -7.27 kcal Atomic # 7 Polarization: -88.35 SS G_CDS: -3.66 Total: -92.01 kcal Atomic # 8 Polarization: -44.57 SS G_CDS: -0.09 Total: -44.66 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -83.13 1.95 -81.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589702280.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.254 kcal (2) G-P(sol) polarization free energy of solvation -83.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds