Wall clock time and date at job start Sat Apr 11 2020 02:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86801 * 120.00225 * 2 1 4 4 H 1.48504 * 109.47083 * 270.00581 * 3 2 1 5 5 H 1.48509 * 109.46909 * 29.99856 * 3 2 1 6 6 H 1.48493 * 109.47381 * 149.99869 * 3 2 1 7 7 C 1.38817 * 120.00085 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99585 * 197.36765 * 7 2 1 9 9 N 1.36935 * 119.99671 * 17.36645 * 7 2 1 10 10 C 1.46931 * 120.62420 * 207.68824 * 9 7 2 11 11 C 1.53191 * 108.77238 * 233.58608 * 10 9 7 12 12 C 1.53050 * 109.31227 * 305.36385 * 11 10 9 13 13 N 1.46496 * 109.45915 * 181.38648 * 12 11 10 14 14 C 1.34774 * 120.00050 * 155.00508 * 13 12 11 15 15 O 1.21282 * 119.99881 * 359.97438 * 14 13 12 16 16 C 1.50705 * 120.00053 * 180.02562 * 14 13 12 17 17 H 1.08998 * 109.67715 * 305.51309 * 16 14 13 18 18 C 1.53405 * 109.68196 * 66.07308 * 16 14 13 19 19 C 1.53080 * 108.28241 * 184.45787 * 18 16 14 20 20 C 1.50770 * 109.66711 * 311.75574 * 19 18 16 21 21 C 1.38507 * 118.76183 * 197.70636 * 20 19 18 22 22 C 1.38101 * 120.31721 * 180.21069 * 21 20 19 23 23 C 1.38295 * 119.98565 * 0.02562 * 22 21 20 24 24 C 1.37966 * 119.95316 * 359.71586 * 23 22 21 25 25 C 1.38365 * 121.40581 * 17.79095 * 20 19 18 26 26 O 1.35838 * 121.81268 * 359.65177 * 25 20 19 27 27 C 1.53043 * 109.53503 * 61.36941 * 12 11 10 28 28 C 1.46925 * 120.63530 * 27.66271 * 9 7 2 29 29 H 0.97008 * 120.00222 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.58859 * 113.80099 * 10 9 7 31 31 H 1.09001 * 109.70421 * 353.44157 * 10 9 7 32 32 H 1.09005 * 109.49680 * 185.41828 * 11 10 9 33 33 H 1.08996 * 109.50077 * 65.31999 * 11 10 9 34 34 H 1.08998 * 109.45933 * 301.36146 * 12 11 10 35 35 H 0.97008 * 120.00358 * 335.00019 * 13 12 11 36 36 H 1.08998 * 109.69862 * 304.15296 * 18 16 14 37 37 H 1.09002 * 109.70414 * 64.75801 * 18 16 14 38 38 H 1.08997 * 109.43688 * 71.81862 * 19 18 16 39 39 H 1.08998 * 109.43410 * 191.70050 * 19 18 16 40 40 H 1.08001 * 119.84442 * 0.18733 * 21 20 19 41 41 H 1.08001 * 120.00868 * 179.97438 * 22 21 20 42 42 H 1.07995 * 120.02254 * 179.97438 * 23 22 21 43 43 H 1.07994 * 119.89312 * 180.21716 * 24 23 22 44 44 H 1.08995 * 109.50182 * 58.58284 * 27 12 11 45 45 H 1.09000 * 109.49492 * 178.68151 * 27 12 11 46 46 H 1.09001 * 109.58655 * 246.20269 * 28 9 7 47 47 H 1.08997 * 109.58215 * 6.62951 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0533 -1.2235 0.2787 9 7 1.3723 -2.3609 -0.3550 10 6 1.8192 -3.6548 0.1787 11 6 2.0742 -4.6094 -0.9919 12 6 0.8184 -4.6887 -1.8631 13 7 1.0474 -5.6263 -2.9652 14 6 0.0035 -6.2460 -3.5507 15 8 -1.1254 -6.0277 -3.1649 16 6 0.2391 -7.2110 -4.6841 17 1 0.8183 -6.7224 -5.4676 18 6 0.9998 -8.4389 -4.1675 19 6 1.3196 -9.3428 -5.3608 20 6 0.0793 -9.5394 -6.1952 21 6 0.0395 -10.5945 -7.0916 22 6 -1.0787 -10.8019 -7.8750 23 6 -2.1655 -9.9535 -7.7667 24 6 -2.1336 -8.9040 -6.8717 25 6 -1.0076 -8.6907 -6.0823 26 8 -1.0139 -7.6470 -5.2129 27 6 0.5005 -3.3032 -2.4302 28 6 0.2277 -2.3338 -1.2758 29 1 -0.4851 0.8401 -0.0004 30 1 1.0469 -4.0693 0.8266 31 1 2.7394 -3.5198 0.7472 32 1 2.3134 -5.6009 -0.6074 33 1 2.9080 -4.2392 -1.5884 34 1 -0.0207 -5.0353 -1.2599 35 1 1.9503 -5.8012 -3.2737 36 1 1.9259 -8.1224 -3.6877 37 1 0.3810 -8.9803 -3.4519 38 1 2.0963 -8.8792 -5.9691 39 1 1.6709 -10.3094 -4.9998 40 1 0.8872 -11.2581 -7.1787 41 1 -1.1043 -11.6259 -8.5727 42 1 -3.0401 -10.1148 -8.3793 43 1 -2.9842 -8.2442 -6.7854 44 1 1.3491 -2.9452 -3.0131 45 1 -0.3803 -3.3650 -3.0693 46 1 -0.6744 -2.6405 -0.7465 47 1 0.0985 -1.3253 -1.6684 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591054555.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:34:35 Heat of formation + Delta-G solvation = -32.811112 kcal Electronic energy + Delta-G solvation = -28009.888038 eV Core-core repulsion = 24157.893470 eV Total energy + Delta-G solvation = -3851.994568 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.18314 -39.58980 -37.82202 -37.05431 -34.83686 -34.34592 -32.29416 -31.15331 -30.46738 -30.02912 -29.42702 -26.76416 -24.85882 -24.12988 -22.76214 -22.32061 -22.14839 -20.77090 -20.10924 -19.32778 -18.17422 -17.53788 -16.90220 -16.68529 -15.81490 -15.51220 -15.27078 -14.87878 -14.72500 -14.58609 -14.27496 -14.00587 -13.66494 -13.60891 -13.53132 -13.39763 -13.02391 -12.86874 -12.57483 -12.42907 -12.14660 -11.82602 -11.56313 -11.52038 -11.30544 -11.15134 -10.95103 -10.78452 -10.75460 -10.42549 -10.24743 -10.10187 -9.81033 -9.78414 -9.46635 -9.08859 -8.78781 -8.44619 -8.41537 -6.71196 -5.79540 -3.22629 1.01748 1.15089 2.48871 2.62711 3.37190 3.41476 3.44035 3.45515 3.60516 4.18357 4.32842 4.37823 4.48351 4.50773 4.65666 4.79102 4.85093 4.93705 5.12677 5.18098 5.24793 5.27151 5.38286 5.39457 5.42601 5.53991 5.59022 5.63008 5.74885 5.77999 6.00853 6.04043 6.15640 6.19782 6.24199 6.27891 6.38356 6.48593 6.56260 6.62233 6.74510 6.85164 6.90543 7.18210 7.35527 7.58285 7.67423 7.78529 8.27515 8.43500 9.19466 9.82797 10.39189 11.28923 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.030710 B = 0.002210 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.545896 B =12668.919466 C =13092.015985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.255 4.255 8 H 0.067 0.933 9 N -0.593 5.593 10 C 0.148 3.852 11 C -0.138 4.138 12 C 0.152 3.848 13 N -0.719 5.719 14 C 0.517 3.483 15 O -0.514 6.514 16 C 0.075 3.925 17 H 0.097 0.903 18 C -0.149 4.149 19 C -0.076 4.076 20 C -0.165 4.165 21 C -0.085 4.085 22 C -0.155 4.155 23 C -0.087 4.087 24 C -0.146 4.146 25 C 0.136 3.864 26 O -0.287 6.287 27 C -0.147 4.147 28 C 0.173 3.827 29 H 0.255 0.745 30 H 0.020 0.980 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.083 0.917 35 H 0.395 0.605 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.128 0.872 43 H 0.132 0.868 44 H 0.055 0.945 45 H 0.053 0.947 46 H 0.021 0.979 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.281 -22.194 -14.760 26.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.385 4.385 8 H 0.084 0.916 9 N -0.315 5.315 10 C 0.021 3.979 11 C -0.178 4.178 12 C 0.050 3.950 13 N -0.371 5.371 14 C 0.301 3.699 15 O -0.388 6.388 16 C 0.015 3.985 17 H 0.114 0.886 18 C -0.187 4.187 19 C -0.112 4.112 20 C -0.166 4.166 21 C -0.103 4.103 22 C -0.174 4.174 23 C -0.106 4.106 24 C -0.164 4.164 25 C 0.090 3.910 26 O -0.200 6.200 27 C -0.188 4.188 28 C 0.047 3.953 29 H 0.065 0.935 30 H 0.038 0.962 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.101 0.899 35 H 0.229 0.771 36 H 0.111 0.889 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.142 0.858 41 H 0.141 0.859 42 H 0.146 0.854 43 H 0.150 0.850 44 H 0.074 0.926 45 H 0.072 0.928 46 H 0.039 0.961 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.169 -21.751 -14.353 26.150 hybrid contribution 1.018 0.684 -0.290 1.260 sum 3.187 -21.067 -14.643 25.854 Atomic orbital electron populations 1.70037 1.05269 1.25602 1.53545 1.25066 0.95288 0.98491 1.00826 0.86284 0.79080 0.83671 0.77674 1.21455 1.21760 1.20439 1.19179 0.92705 0.84834 1.41748 0.91577 1.44115 1.35851 1.01389 1.50175 1.20835 0.98046 0.86749 0.92271 1.22346 0.96573 0.99806 0.99091 1.21102 0.98942 0.88674 0.86318 1.46198 1.08657 1.45239 1.36983 1.19838 0.85759 0.81108 0.83212 1.90766 1.22378 1.62913 1.62750 1.22297 0.85025 0.95121 0.96057 0.88576 1.22217 1.01774 0.95785 0.98907 1.20492 0.94888 1.00861 0.95004 1.19840 0.96795 0.98093 1.01857 1.20878 0.98196 0.96331 0.94869 1.21019 0.94127 1.00811 1.01402 1.20943 0.98504 0.93881 0.97227 1.20658 0.98125 1.00693 0.96973 1.18792 0.94555 0.87487 0.90119 1.86099 1.30211 1.46404 1.57268 1.22580 1.00555 0.95011 1.00631 1.20772 0.88666 0.98244 0.87642 0.93537 0.96170 0.92265 0.92563 0.91766 0.89873 0.77133 0.88933 0.89630 0.90057 0.89499 0.85843 0.85921 0.85380 0.84982 0.92575 0.92783 0.96072 0.89146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.28 11.19 55.49 0.62 -25.66 16 2 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 3 Si 0.90 21.57 29.59 -169.99 -5.03 16.54 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.26 -6.90 9.59 -15.06 -0.14 -7.04 16 8 H 0.07 1.74 7.89 -52.49 -0.41 1.33 16 9 N -0.59 -14.63 2.99 -172.32 -0.52 -15.14 16 10 C 0.15 2.98 6.51 -3.71 -0.02 2.96 16 11 C -0.14 -2.19 5.55 -26.61 -0.15 -2.34 16 12 C 0.15 2.58 2.42 -67.88 -0.16 2.41 16 13 N -0.72 -9.54 5.04 -53.76 -0.27 -9.81 16 14 C 0.52 7.72 7.15 -10.98 -0.08 7.65 16 15 O -0.51 -10.26 16.18 -14.20 -0.23 -10.49 16 16 C 0.08 0.87 3.21 -27.67 -0.09 0.78 16 17 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 18 C -0.15 -1.27 5.46 -26.48 -0.14 -1.41 16 19 C -0.08 -0.55 5.86 -27.81 -0.16 -0.71 16 20 C -0.16 -1.58 5.75 -104.44 -0.60 -2.19 16 21 C -0.08 -0.69 9.67 -39.53 -0.38 -1.07 16 22 C -0.16 -1.21 10.04 -39.61 -0.40 -1.61 16 23 C -0.09 -0.75 10.04 -39.66 -0.40 -1.14 16 24 C -0.15 -1.57 9.94 -39.34 -0.39 -1.96 16 25 C 0.14 1.62 6.47 -39.19 -0.25 1.37 16 26 O -0.29 -4.06 9.47 -38.98 -0.37 -4.43 16 27 C -0.15 -2.91 5.65 -26.61 -0.15 -3.06 16 28 C 0.17 4.20 5.31 -3.71 -0.02 4.18 16 29 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 1.15 7.94 -51.93 -0.41 0.73 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.08 1.60 7.58 -51.93 -0.39 1.21 16 35 H 0.40 3.84 8.44 -40.82 -0.34 3.49 16 36 H 0.09 0.58 7.97 -51.93 -0.41 0.16 16 37 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.12 0.71 8.06 -52.49 -0.42 0.28 16 41 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 42 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 43 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.09 2.45 6.04 -51.93 -0.31 2.14 16 LS Contribution 377.11 15.07 5.68 5.68 Total: -1.00 -33.49 377.11 -11.09 -44.58 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -7.35 Total: 1.94 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -3.63 Total: -3.22 kcal Atomic # 7 Polarization: -50.45 SS G_CDS: -0.17 Total: -50.61 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: -0.60 Total: -14.92 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.49 -11.09 -44.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591054555.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.772 kcal (2) G-P(sol) polarization free energy of solvation -33.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds