Wall clock time and date at job start Sat Apr 11 2020 02:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 119.99994 * 2 1 4 4 H 1.48497 * 109.47270 * 269.99678 * 3 2 1 5 5 H 1.48505 * 109.47244 * 29.99740 * 3 2 1 6 6 H 1.48504 * 109.47236 * 149.99864 * 3 2 1 7 7 C 1.37876 * 120.00142 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00465 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99907 * 0.02562 * 7 2 1 10 10 O 1.42902 * 110.88638 * 62.42343 * 9 7 2 11 11 C 1.55157 * 111.00458 * 186.34639 * 9 7 2 12 12 C 1.54330 * 103.01998 * 153.38414 * 11 9 7 13 13 N 1.47023 * 107.26732 * 338.13961 * 12 11 9 14 14 C 1.34775 * 125.65188 * 178.85335 * 13 12 11 15 15 O 1.21584 * 120.00202 * 179.69320 * 14 13 12 16 16 N 1.34778 * 120.00006 * 359.69095 * 14 13 12 17 17 C 1.46497 * 120.00316 * 180.02562 * 16 14 13 18 18 H 1.09007 * 109.24865 * 324.47189 * 17 16 14 19 19 C 1.52738 * 109.25513 * 205.00022 * 17 16 14 20 20 C 1.53322 * 108.37981 * 188.65977 * 19 17 16 21 21 C 1.52727 * 108.38592 * 69.88519 * 20 19 17 22 22 C 1.50634 * 110.58726 * 308.90605 * 21 20 19 23 23 C 1.38916 * 117.74798 * 197.48912 * 22 21 20 24 24 C 1.37932 * 120.54354 * 180.26114 * 23 22 21 25 25 C 1.38264 * 119.77049 * 0.39219 * 24 23 22 26 26 C 1.37933 * 119.77097 * 359.34021 * 25 24 23 27 27 C 1.37665 * 122.56668 * 17.70590 * 22 21 20 28 28 C 1.47431 * 108.69956 * 358.58660 * 13 12 11 29 29 H 0.97004 * 120.00240 * 0.02562 * 1 2 3 30 30 H 0.96701 * 113.99791 * 297.57400 * 10 9 7 31 31 H 1.09001 * 110.71948 * 271.93619 * 11 9 7 32 32 H 1.08991 * 110.71961 * 35.21539 * 11 9 7 33 33 H 1.09004 * 109.99085 * 218.66897 * 12 11 9 34 34 H 1.08998 * 109.78581 * 97.49532 * 12 11 9 35 35 H 0.96998 * 119.99821 * 0.02562 * 16 14 13 36 36 H 1.09003 * 109.67836 * 68.93437 * 19 17 16 37 37 H 1.08995 * 109.67991 * 308.38017 * 19 17 16 38 38 H 1.09003 * 109.68448 * 310.15905 * 20 19 17 39 39 H 1.09009 * 109.70934 * 189.62797 * 20 19 17 40 40 H 1.09002 * 109.25635 * 188.62130 * 21 20 19 41 41 H 1.08999 * 109.22234 * 69.17384 * 21 20 19 42 42 H 1.07998 * 119.72925 * 0.27834 * 23 22 21 43 43 H 1.08002 * 120.11105 * 180.10931 * 24 23 22 44 44 H 1.07999 * 120.11519 * 179.60119 * 25 24 23 45 45 H 1.07997 * 119.73076 * 180.25923 * 26 25 24 46 46 H 1.09006 * 110.36521 * 143.19677 * 28 13 12 47 47 H 1.08999 * 110.36433 * 265.51443 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 0.4615 -2.6316 -1.1832 11 6 2.2196 -3.7005 0.1613 12 6 1.3297 -4.7798 0.8133 13 7 0.2061 -4.0865 1.4602 14 6 -0.8069 -4.6800 2.1220 15 8 -1.6835 -4.0039 2.6246 16 7 -0.8482 -6.0231 2.2267 17 6 -1.9496 -6.6683 2.9455 18 1 -2.2397 -6.0459 3.7921 19 6 -1.4873 -8.0311 3.4573 20 6 -2.7059 -8.7781 4.0120 21 6 -3.6082 -9.1639 2.8417 22 6 -3.8906 -7.9658 1.9733 23 6 -4.9673 -8.0404 1.0987 24 6 -5.2747 -6.9790 0.2733 25 6 -4.5005 -5.8340 0.3101 26 6 -3.4344 -5.7559 1.1818 27 6 -3.1253 -6.8223 2.0165 28 6 0.3745 -2.6342 1.2706 29 1 -0.4851 0.8401 -0.0004 30 1 -0.2245 -1.9563 -1.2760 31 1 2.5850 -4.0340 -0.8100 32 1 3.0495 -3.4415 0.8186 33 1 1.9012 -5.3341 1.5578 34 1 0.9547 -5.4601 0.0487 35 1 -0.1487 -6.5625 1.8260 36 1 -0.7488 -7.8952 4.2475 37 1 -1.0487 -8.6012 2.6384 38 1 -3.2518 -8.1312 4.6987 39 1 -2.3793 -9.6767 4.5355 40 1 -4.5485 -9.5579 3.2274 41 1 -3.1145 -9.9314 2.2457 42 1 -5.5689 -8.9367 1.0650 43 1 -6.1145 -7.0438 -0.4028 44 1 -4.7323 -5.0020 -0.3384 45 1 -2.8327 -4.8596 1.2131 46 1 -0.5934 -2.1571 1.1161 47 1 0.8816 -2.1957 2.1300 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591890585.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:34:38 Heat of formation + Delta-G solvation = -56.406111 kcal Electronic energy + Delta-G solvation = -29144.168838 eV Core-core repulsion = 25291.151114 eV Total energy + Delta-G solvation = -3853.017724 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.55377 -39.20639 -37.40225 -36.23771 -34.23463 -34.03455 -32.21987 -31.20852 -30.22508 -29.87230 -28.32608 -27.61583 -25.07570 -23.57726 -22.81979 -22.53839 -21.68526 -19.69730 -19.63466 -19.31214 -17.56276 -17.04384 -16.68991 -16.02222 -15.44909 -15.26456 -15.06312 -14.95358 -14.49299 -14.28922 -13.97811 -13.77564 -13.51185 -13.09517 -13.05937 -12.82697 -12.70783 -12.49577 -12.19218 -12.00160 -11.73373 -11.63768 -11.48850 -11.32281 -11.11958 -11.03204 -10.82421 -10.66723 -10.60072 -10.46344 -10.45370 -10.18752 -9.62402 -9.35698 -8.87643 -8.68758 -8.57217 -8.49472 -8.34772 -7.69633 -6.26595 -4.36375 1.44371 1.55147 3.12089 3.22399 3.29431 3.31542 3.69439 3.92102 4.26395 4.41538 4.55099 4.61958 4.78752 4.90512 5.00282 5.04114 5.13837 5.27185 5.35821 5.40419 5.41827 5.50454 5.60895 5.64994 5.67221 5.76054 5.79756 5.85146 5.95950 6.01800 6.05673 6.14298 6.18190 6.25170 6.51390 6.59341 6.67885 6.70999 6.74312 6.88866 6.91356 6.96715 7.17859 7.24370 7.33544 7.65349 7.75282 8.04462 8.52468 8.67809 9.11227 9.31065 9.39285 10.80348 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.020023 B = 0.003167 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.037948 B = 8839.333990 C = 9464.411415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.072 3.928 3 Si 0.903 3.097 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.538 4.538 8 H 0.066 0.934 9 C 0.248 3.752 10 O -0.582 6.582 11 C -0.116 4.116 12 C 0.105 3.895 13 N -0.627 5.627 14 C 0.716 3.284 15 O -0.593 6.593 16 N -0.745 5.745 17 C 0.206 3.794 18 H 0.096 0.904 19 C -0.124 4.124 20 C -0.115 4.115 21 C -0.079 4.079 22 C -0.076 4.076 23 C -0.134 4.134 24 C -0.119 4.119 25 C -0.128 4.128 26 C -0.097 4.097 27 C -0.094 4.094 28 C 0.114 3.886 29 H 0.270 0.730 30 H 0.381 0.619 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.051 0.949 34 H 0.055 0.945 35 H 0.394 0.606 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.116 0.884 43 H 0.117 0.883 44 H 0.120 0.880 45 H 0.141 0.859 46 H 0.085 0.915 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.987 -18.062 4.700 19.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.132 4.132 3 Si 0.730 3.270 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.577 4.577 8 H 0.084 0.916 9 C 0.208 3.792 10 O -0.391 6.391 11 C -0.154 4.154 12 C -0.019 4.019 13 N -0.363 5.363 14 C 0.419 3.581 15 O -0.473 6.473 16 N -0.401 5.401 17 C 0.101 3.899 18 H 0.114 0.886 19 C -0.162 4.162 20 C -0.153 4.153 21 C -0.116 4.116 22 C -0.077 4.077 23 C -0.152 4.152 24 C -0.137 4.137 25 C -0.146 4.146 26 C -0.115 4.115 27 C -0.095 4.095 28 C -0.008 4.008 29 H 0.080 0.920 30 H 0.230 0.770 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.227 0.773 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.134 0.866 43 H 0.135 0.865 44 H 0.138 0.862 45 H 0.158 0.842 46 H 0.104 0.896 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.436 -17.956 5.027 19.423 hybrid contribution 0.296 1.211 -0.235 1.268 sum -5.140 -16.746 4.793 18.160 Atomic orbital electron populations 1.69716 1.05959 1.27880 1.49412 1.25072 0.95031 0.99718 0.93363 0.86418 0.79777 0.82516 0.78270 1.20425 1.21018 1.19723 1.21451 0.93613 0.90064 1.52529 0.91578 1.19629 0.86652 0.91514 0.81430 1.86106 1.51539 1.57115 1.44317 1.22586 0.97545 0.95193 1.00033 1.21936 0.88302 0.96095 0.95555 1.47964 1.23217 1.09813 1.55352 1.15523 0.81787 0.81449 0.79380 1.90887 1.39451 1.63245 1.53668 1.45254 1.28221 1.05385 1.61194 1.19484 0.84013 0.93457 0.92991 0.88590 1.21804 0.98356 0.94893 1.01188 1.21498 0.95920 1.00351 0.97540 1.20469 1.00114 0.95352 0.95669 1.19558 0.95745 0.94725 0.97671 1.21016 0.97913 0.98783 0.97447 1.21059 0.99578 0.93895 0.99190 1.21165 0.95959 0.98072 0.99373 1.21822 0.96710 0.99142 0.93808 1.20028 0.97422 0.93629 0.98460 1.23133 1.02534 0.75580 0.99508 0.92012 0.76952 0.90808 0.90456 0.93124 0.92674 0.77257 0.90701 0.91082 0.91212 0.90980 0.90863 0.90764 0.86602 0.86480 0.86234 0.84161 0.89642 0.92511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.70 10.69 55.43 0.59 -23.11 16 2 C 0.07 1.86 5.29 -17.82 -0.09 1.76 16 3 Si 0.90 20.29 29.54 -169.99 -5.02 15.27 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.54 -13.88 8.27 -34.44 -0.28 -14.16 16 8 H 0.07 1.67 7.79 -52.49 -0.41 1.26 16 9 C 0.25 5.93 0.87 -89.63 -0.08 5.85 16 10 O -0.58 -14.69 13.16 -35.23 -0.46 -15.15 16 11 C -0.12 -2.25 6.13 -24.89 -0.15 -2.40 16 12 C 0.10 1.80 6.15 -3.06 -0.02 1.78 16 13 N -0.63 -12.77 3.33 -176.23 -0.59 -13.35 16 14 C 0.72 14.20 6.99 -86.92 -0.61 13.59 16 15 O -0.59 -13.83 14.35 5.29 0.08 -13.75 16 16 N -0.75 -11.28 4.81 -59.98 -0.29 -11.56 16 17 C 0.21 2.80 2.59 -69.25 -0.18 2.62 16 18 H 0.10 1.49 7.58 -51.92 -0.39 1.09 16 19 C -0.12 -1.19 5.43 -26.70 -0.14 -1.33 16 20 C -0.12 -0.95 5.98 -26.70 -0.16 -1.10 16 21 C -0.08 -0.70 5.67 -28.06 -0.16 -0.85 16 22 C -0.08 -0.93 5.74 -104.61 -0.60 -1.53 16 23 C -0.13 -1.58 9.61 -39.44 -0.38 -1.96 16 24 C -0.12 -1.51 10.05 -39.68 -0.40 -1.91 16 25 C -0.13 -1.93 10.05 -39.68 -0.40 -2.33 16 26 C -0.10 -1.65 8.99 -39.44 -0.35 -2.01 16 27 C -0.09 -1.37 5.55 -104.62 -0.58 -1.95 16 28 C 0.11 2.73 5.38 -2.53 -0.01 2.72 16 29 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 30 H 0.38 9.91 7.56 45.56 0.34 10.25 16 31 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 32 H 0.08 1.42 8.03 -51.93 -0.42 1.00 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.39 5.07 7.58 -40.82 -0.31 4.76 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 38 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 39 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 40 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.12 1.06 8.05 -52.49 -0.42 0.64 16 43 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 44 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 45 H 0.14 2.86 4.37 -52.49 -0.23 2.63 16 46 H 0.09 2.31 7.33 -51.93 -0.38 1.93 16 47 H 0.06 1.41 8.03 -51.93 -0.42 0.99 16 LS Contribution 369.85 15.07 5.57 5.57 Total: -1.00 -29.81 369.85 -11.14 -40.95 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: -6.41 Total: 18.37 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: -4.61 Total: -3.23 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: -0.28 Total: -48.02 kcal Atomic # 8 Polarization: -28.52 SS G_CDS: -0.39 Total: -28.91 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.81 -11.14 -40.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591890585.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.456 kcal (2) G-P(sol) polarization free energy of solvation -29.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds