Wall clock time and date at job start Sat Apr 11 2020 02:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00161 * 2 1 4 4 H 1.48496 * 109.47575 * 239.99799 * 3 2 1 5 5 H 1.48494 * 109.47100 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.47035 * 119.99737 * 3 2 1 7 7 C 1.37878 * 120.00162 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00338 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00023 * 359.97438 * 7 2 1 10 10 O 1.42899 * 110.64044 * 298.31634 * 9 7 2 11 11 C 1.55154 * 110.87337 * 175.06802 * 9 7 2 12 12 C 1.55131 * 101.48327 * 205.90326 * 11 9 7 13 13 N 1.47422 * 104.72679 * 37.29249 * 12 11 9 14 14 C 1.34774 * 125.65014 * 155.82077 * 13 12 11 15 15 O 1.21585 * 119.99865 * 179.69114 * 14 13 12 16 16 N 1.34773 * 119.99731 * 359.69249 * 14 13 12 17 17 C 1.46508 * 119.99813 * 180.02562 * 16 14 13 18 18 C 1.53000 * 109.47067 * 173.79368 * 17 16 14 19 19 C 1.50704 * 115.54993 * 293.12707 * 18 17 16 20 20 C 1.38236 * 119.99786 * 137.49448 * 19 18 17 21 21 C 1.38239 * 119.99952 * 179.74833 * 20 19 18 22 22 C 1.38237 * 119.99480 * 0.54815 * 21 20 19 23 23 C 1.38238 * 120.00254 * 359.70670 * 22 21 20 24 24 C 1.38233 * 119.99972 * 317.76980 * 19 18 17 25 25 C 1.52994 * 117.49938 * 147.45968 * 18 17 16 26 26 C 1.53001 * 117.49824 * 78.79681 * 18 17 16 27 27 C 1.47021 * 108.69976 * 335.55594 * 13 12 11 28 28 H 0.96998 * 119.99768 * 0.02562 * 1 2 3 29 29 H 0.96701 * 114.00124 * 61.68566 * 10 9 7 30 30 H 1.09000 * 111.00120 * 324.13489 * 11 9 7 31 31 H 1.08996 * 111.00287 * 87.95417 * 11 9 7 32 32 H 1.09009 * 110.49091 * 278.45047 * 12 11 9 33 33 H 1.09001 * 110.34615 * 156.06238 * 12 11 9 34 34 H 0.96999 * 120.00347 * 0.02562 * 16 14 13 35 35 H 1.08994 * 109.46940 * 293.79220 * 17 16 14 36 36 H 1.09003 * 109.47187 * 53.79567 * 17 16 14 37 37 H 1.07998 * 120.00043 * 359.97438 * 20 19 18 38 38 H 1.07997 * 120.00084 * 180.27622 * 21 20 19 39 39 H 1.08004 * 119.99443 * 179.72777 * 22 21 20 40 40 H 1.07998 * 119.99469 * 179.97438 * 23 22 21 41 41 H 1.08003 * 120.00330 * 0.02562 * 24 19 18 42 42 H 1.09000 * 117.49850 * 0.02562 * 25 18 17 43 43 H 1.09000 * 117.49936 * 145.01605 * 25 18 17 44 44 H 1.08998 * 117.49910 * 214.97295 * 26 18 17 45 45 H 1.08991 * 117.49900 * 0.02562 * 26 18 17 46 46 H 1.09001 * 109.88056 * 120.70926 * 27 13 12 47 47 H 1.09000 * 109.88120 * 241.71240 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 8 0.4503 -2.6186 1.1770 11 6 2.2255 -3.7001 -0.1258 12 6 1.3105 -4.7743 -0.7703 13 7 0.4608 -4.0256 -1.7140 14 6 -0.1465 -4.5394 -2.8020 15 8 -0.8315 -3.8263 -3.5095 16 7 0.0057 -5.8436 -3.1057 17 6 -0.6539 -6.4021 -4.2887 18 6 -0.1986 -7.8486 -4.4913 19 6 1.2516 -8.0280 -4.8600 20 6 1.9951 -9.0339 -4.2715 21 6 3.3239 -9.2017 -4.6136 22 6 3.9122 -8.3564 -5.5357 23 6 3.1701 -7.3472 -6.1203 24 6 1.8398 -7.1830 -5.7825 25 6 -1.2070 -8.8289 -5.0937 26 6 -0.8414 -8.9216 -3.6101 27 6 0.3803 -2.6269 -1.2682 28 1 -0.4850 0.8400 -0.0004 29 1 -0.2277 -1.9345 1.2626 30 1 3.0650 -3.4557 -0.7767 31 1 2.5751 -4.0234 0.8546 32 1 0.6975 -5.2592 -0.0104 33 1 1.9099 -5.5126 -1.3031 34 1 0.5519 -6.4126 -2.5411 35 1 -1.7344 -6.3777 -4.1476 36 1 -0.3885 -5.8114 -5.1655 37 1 1.5368 -9.6909 -3.5472 38 1 3.9036 -9.9904 -4.1571 39 1 4.9516 -8.4848 -5.7997 40 1 3.6300 -6.6866 -6.8404 41 1 1.2603 -6.3940 -6.2387 42 1 -2.1948 -8.4431 -5.3461 43 1 -0.8216 -9.6037 -5.7564 44 1 -0.2155 -9.7574 -3.2975 45 1 -1.5889 -8.5970 -2.8864 46 1 0.7611 -1.9669 -2.0477 47 1 -0.6537 -2.3701 -1.0379 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591901931.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:34:43 Heat of formation + Delta-G solvation = -23.289385 kcal Electronic energy + Delta-G solvation = -28506.656450 eV Core-core repulsion = 24655.074775 eV Total energy + Delta-G solvation = -3851.581675 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.28563 -39.38307 -37.67655 -37.04251 -34.21802 -33.68897 -32.19685 -31.14077 -30.72145 -30.00496 -27.90975 -26.90183 -24.73291 -23.29164 -23.20626 -22.42064 -22.07585 -19.80159 -19.64496 -19.26861 -17.72234 -17.22311 -16.96730 -15.99047 -15.53817 -15.22379 -15.06759 -14.96000 -14.76082 -14.39108 -14.20709 -13.76713 -13.65977 -13.39656 -12.96449 -12.90494 -12.80738 -12.53619 -12.38011 -12.01092 -11.78882 -11.64124 -11.38343 -11.30369 -11.17840 -11.00341 -10.81647 -10.74487 -10.64076 -10.48411 -10.37093 -10.14212 -9.56686 -9.28483 -9.07221 -8.80620 -8.73902 -8.64729 -8.29005 -7.70709 -6.25052 -4.33656 1.16087 1.25276 3.02635 3.25110 3.30394 3.32357 3.48965 3.76975 3.80085 4.28381 4.29193 4.40479 4.52293 4.54717 4.79444 4.86220 4.91848 4.98196 5.02772 5.25429 5.36650 5.41450 5.41821 5.50331 5.63177 5.67035 5.73068 5.78533 5.83071 5.84057 5.90135 5.93202 6.04635 6.14189 6.32647 6.37710 6.45423 6.53958 6.75289 6.80500 6.83568 6.92701 7.03505 7.30339 7.35935 7.69772 7.76179 8.07241 8.57953 8.70111 9.17879 9.32462 9.41094 10.82760 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.016271 B = 0.002982 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.480425 B = 9388.309321 C = 9934.554217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.071 3.929 3 Si 0.903 3.097 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.538 4.538 8 H 0.065 0.935 9 C 0.248 3.752 10 O -0.585 6.585 11 C -0.115 4.115 12 C 0.104 3.896 13 N -0.630 5.630 14 C 0.716 3.284 15 O -0.599 6.599 16 N -0.746 5.746 17 C 0.183 3.817 18 C -0.107 4.107 19 C -0.043 4.043 20 C -0.120 4.120 21 C -0.119 4.119 22 C -0.124 4.124 23 C -0.116 4.116 24 C -0.105 4.105 25 C -0.151 4.151 26 C -0.168 4.168 27 C 0.124 3.876 28 H 0.270 0.730 29 H 0.382 0.618 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.394 0.606 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.123 0.877 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.102 0.898 43 H 0.099 0.901 44 H 0.100 0.900 45 H 0.102 0.898 46 H 0.063 0.937 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.733 -19.842 -9.056 21.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.577 4.577 8 H 0.084 0.916 9 C 0.208 3.792 10 O -0.394 6.394 11 C -0.153 4.153 12 C -0.019 4.019 13 N -0.367 5.367 14 C 0.417 3.583 15 O -0.478 6.478 16 N -0.403 5.403 17 C 0.058 3.942 18 C -0.108 4.108 19 C -0.043 4.043 20 C -0.138 4.138 21 C -0.137 4.137 22 C -0.142 4.142 23 C -0.135 4.135 24 C -0.123 4.123 25 C -0.188 4.188 26 C -0.205 4.205 27 C 0.002 3.998 28 H 0.080 0.920 29 H 0.232 0.768 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.228 0.772 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.120 0.880 43 H 0.117 0.883 44 H 0.118 0.882 45 H 0.120 0.880 46 H 0.081 0.919 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.397 -19.701 -9.548 22.023 hybrid contribution 0.385 1.155 0.101 1.221 sum 2.782 -18.546 -9.447 20.999 Atomic orbital electron populations 1.69691 1.05975 1.27990 1.49539 1.25065 0.95045 0.99716 0.93401 0.86466 0.79542 0.82149 0.78772 1.20041 1.21084 1.20019 1.21456 0.93606 0.90132 1.52461 0.91642 1.19499 0.86557 0.91945 0.81213 1.86102 1.51811 1.56599 1.44875 1.22751 0.97355 0.95143 1.00092 1.22258 0.92748 0.95064 0.91843 1.47945 1.50910 1.12897 1.24942 1.15496 0.80368 0.81454 0.80933 1.90880 1.44965 1.59481 1.52515 1.45016 1.56072 1.09094 1.30137 1.20508 0.96238 0.89116 0.88347 1.20401 0.91298 0.92451 1.06635 1.18945 0.92892 0.95832 0.96585 1.21053 0.94265 0.98371 1.00097 1.21103 0.94994 0.99547 0.98080 1.21157 0.99814 0.95798 0.97472 1.21159 0.94204 0.98060 1.00029 1.21015 0.95113 0.98838 0.97309 1.23060 0.98937 1.00509 0.96342 1.23156 1.03190 1.00190 0.93927 1.22836 1.01380 0.77295 0.98291 0.91965 0.76791 0.90539 0.90680 0.92078 0.92734 0.77231 0.91726 0.91077 0.85956 0.86155 0.86236 0.86040 0.85949 0.87987 0.88305 0.88186 0.87970 0.91860 0.91947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.07 10.96 55.43 0.61 -23.46 16 2 C 0.07 1.88 5.28 -17.82 -0.09 1.78 16 3 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.54 -14.21 8.13 -34.44 -0.28 -14.49 16 8 H 0.07 1.69 7.78 -52.49 -0.41 1.29 16 9 C 0.25 6.06 0.85 -89.94 -0.08 5.98 16 10 O -0.59 -14.76 13.07 -35.23 -0.46 -15.22 16 11 C -0.12 -2.32 6.24 -24.46 -0.15 -2.48 16 12 C 0.10 1.87 6.58 -2.41 -0.02 1.85 16 13 N -0.63 -13.33 3.32 -176.10 -0.59 -13.92 16 14 C 0.72 14.79 8.49 -86.92 -0.74 14.05 16 15 O -0.60 -14.70 16.66 5.29 0.09 -14.61 16 16 N -0.75 -11.49 5.44 -65.22 -0.35 -11.84 16 17 C 0.18 2.38 5.23 -4.04 -0.02 2.36 16 18 C -0.11 -1.06 1.92 -155.66 -0.30 -1.36 16 19 C -0.04 -0.44 5.31 -104.62 -0.56 -1.00 16 20 C -0.12 -1.13 9.38 -39.58 -0.37 -1.50 16 21 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 22 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 23 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 24 C -0.10 -1.16 9.34 -39.59 -0.37 -1.53 16 25 C -0.15 -1.20 9.92 -26.69 -0.26 -1.46 16 26 C -0.17 -1.37 9.57 -26.69 -0.26 -1.62 16 27 C 0.12 3.08 5.23 -3.07 -0.02 3.06 16 28 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.38 9.87 7.45 45.56 0.34 10.21 16 30 H 0.08 1.50 8.04 -51.93 -0.42 1.08 16 31 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 32 H 0.06 1.06 8.14 -51.92 -0.42 0.64 16 33 H 0.05 0.81 7.29 -51.93 -0.38 0.43 16 34 H 0.39 5.38 6.96 -40.82 -0.28 5.10 16 35 H 0.06 0.86 8.08 -51.93 -0.42 0.44 16 36 H 0.07 1.00 6.93 -51.93 -0.36 0.64 16 37 H 0.12 0.94 6.01 -52.49 -0.32 0.63 16 38 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 39 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 40 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 41 H 0.12 1.36 6.95 -52.48 -0.36 1.00 16 42 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.10 0.70 6.17 -51.93 -0.32 0.38 16 45 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.06 1.72 7.82 -51.93 -0.41 1.32 16 47 H 0.06 1.69 7.92 -51.93 -0.41 1.28 16 LS Contribution 382.52 15.07 5.76 5.76 Total: -1.00 -30.83 382.52 -10.93 -41.75 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: -6.26 Total: 16.88 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -4.70 Total: -0.97 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: -0.33 Total: -49.22 kcal Atomic # 8 Polarization: -29.47 SS G_CDS: -0.37 Total: -29.84 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.83 -10.93 -41.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591901931.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.464 kcal (2) G-P(sol) polarization free energy of solvation -30.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds