Wall clock time and date at job start Sat Apr 11 2020 02:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48508 * 109.46872 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00189 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00235 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 H 1.08991 * 110.88886 * 34.29701 * 10 9 7 12 12 C 1.55162 * 111.00439 * 270.41738 * 10 9 7 13 13 C 1.54364 * 102.91908 * 206.45486 * 12 10 9 14 14 N 1.47018 * 107.29378 * 22.13822 * 13 12 10 15 15 C 1.34774 * 125.65185 * 181.12513 * 14 13 12 16 16 O 1.21285 * 120.00064 * 179.97438 * 15 14 13 17 17 C 1.50694 * 119.99909 * 359.96268 * 15 14 13 18 18 C 1.53004 * 109.47234 * 179.97438 * 17 15 14 19 19 H 1.09000 * 109.33638 * 54.99599 * 18 17 15 20 20 O 1.42726 * 109.33673 * 295.32179 * 18 17 15 21 21 C 1.43219 * 113.11534 * 187.98529 * 20 18 17 22 22 C 1.52974 * 108.47126 * 70.72271 * 21 20 18 23 23 C 1.50747 * 109.77186 * 310.83701 * 22 21 20 24 24 C 1.38583 * 118.77184 * 196.77914 * 23 22 21 25 25 C 1.38073 * 120.28209 * 180.19347 * 24 23 22 26 26 C 1.38265 * 119.85970 * 359.97438 * 25 24 23 27 27 C 1.38054 * 119.89502 * 359.92345 * 26 25 24 28 28 C 1.37681 * 121.28557 * 16.98006 * 23 22 21 29 29 C 1.47425 * 108.69980 * 1.09396 * 14 13 12 30 30 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 31 31 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 32 32 H 1.09001 * 110.71737 * 324.79051 * 12 10 9 33 33 H 1.08995 * 110.71639 * 88.05709 * 12 10 9 34 34 H 1.08997 * 109.84744 * 262.73023 * 13 12 10 35 35 H 1.09010 * 109.90219 * 141.58064 * 13 12 10 36 36 H 1.09005 * 109.47089 * 299.99525 * 17 15 14 37 37 H 1.08995 * 109.47439 * 60.00044 * 17 15 14 38 38 H 1.08998 * 109.64052 * 190.41843 * 21 20 18 39 39 H 1.08999 * 109.63564 * 311.03076 * 21 20 18 40 40 H 1.09003 * 109.41992 * 70.92886 * 22 21 20 41 41 H 1.09000 * 109.42235 * 190.80828 * 22 21 20 42 42 H 1.08007 * 119.86207 * 0.17139 * 24 23 22 43 43 H 1.07992 * 120.07094 * 180.02562 * 25 24 23 44 44 H 1.07997 * 120.05228 * 179.97438 * 26 25 24 45 45 H 1.07999 * 119.85189 * 180.02562 * 27 26 25 46 46 H 1.09005 * 110.36811 * 217.03288 * 29 14 13 47 47 H 1.09000 * 110.46281 * 94.75286 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0134 11 1 2.9808 -3.5758 0.5607 12 6 2.3451 -4.1255 -1.4644 13 6 2.4542 -5.6582 -1.3167 14 7 1.7397 -6.0308 -0.0871 15 6 1.6228 -7.2797 0.4058 16 8 1.0077 -7.4709 1.4335 17 6 2.2561 -8.4385 -0.3200 18 6 1.9766 -9.7337 0.4449 19 1 0.9015 -9.8437 0.5876 20 8 2.6192 -9.6787 1.7182 21 6 2.5638 -10.9202 2.4300 22 6 3.4827 -11.9223 1.7289 23 6 3.1950 -11.9293 0.2492 24 6 3.6511 -12.9924 -0.5140 25 6 3.4086 -13.0286 -1.8728 26 6 2.7073 -12.0001 -2.4745 27 6 2.2508 -10.9418 -1.7146 28 6 2.4970 -10.9040 -0.3483 29 6 1.1729 -4.8117 0.5180 30 1 -0.4850 0.8401 0.0004 31 1 0.3555 -2.3880 -0.0068 32 1 1.5205 -3.8598 -2.1258 33 1 3.2828 -3.7046 -1.8271 34 1 3.5019 -5.9489 -1.2392 35 1 1.9943 -6.1474 -2.1755 36 1 1.8371 -8.5113 -1.3237 37 1 3.3326 -8.2812 -0.3862 38 1 2.9006 -10.7698 3.4557 39 1 1.5413 -11.2979 2.4288 40 1 4.5220 -11.6385 1.8947 41 1 3.3098 -12.9187 2.1355 42 1 4.1989 -13.7959 -0.0440 43 1 3.7652 -13.8589 -2.4641 44 1 2.5162 -12.0251 -3.5372 45 1 1.7027 -10.1390 -2.1853 46 1 1.2315 -4.8652 1.6051 47 1 0.1391 -4.6742 0.2009 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970524847.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:34:06 Heat of formation + Delta-G solvation = -39.745137 kcal Electronic energy + Delta-G solvation = -27803.261898 eV Core-core repulsion = 23950.966648 eV Total energy + Delta-G solvation = -3852.295250 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.80951 -39.58635 -37.81840 -37.10549 -34.13206 -33.96669 -32.50840 -31.53123 -30.27735 -29.52965 -28.92799 -27.44756 -24.75209 -24.07269 -23.50780 -22.77555 -21.85627 -20.32399 -20.06918 -18.95132 -17.65322 -17.35138 -16.92799 -16.45887 -16.17781 -15.85194 -15.51144 -15.09975 -14.62592 -14.58297 -14.30012 -13.84796 -13.82882 -13.57864 -13.39129 -13.18056 -12.95149 -12.80370 -12.46773 -12.40026 -12.26794 -12.05798 -11.86450 -11.58810 -11.58087 -11.22101 -11.16258 -10.85843 -10.84567 -10.69337 -10.27703 -10.03797 -9.81550 -9.77409 -9.58863 -9.08504 -8.96938 -8.91841 -8.34953 -7.04962 -5.82705 -3.13090 0.97982 1.03062 2.84657 3.15074 3.38726 3.40682 3.46698 3.48743 3.60442 4.27090 4.31485 4.47779 4.54677 4.58962 4.74387 4.77944 4.82308 4.95882 5.04168 5.06696 5.09868 5.19002 5.22531 5.30949 5.34313 5.41775 5.50858 5.58958 5.60067 5.62087 5.65582 5.70464 5.76514 5.78789 6.00132 6.10390 6.15887 6.17440 6.25180 6.27909 6.39483 6.57806 6.64115 6.64659 6.92001 7.00483 7.65840 7.78726 8.34495 8.39797 9.46470 10.00736 10.35717 11.39596 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.026571 B = 0.002175 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.530624 B =12870.380009 C =13399.234504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.243 4.243 8 H 0.073 0.927 9 N -0.715 5.715 10 C 0.171 3.829 11 H 0.065 0.935 12 C -0.155 4.155 13 C 0.101 3.899 14 N -0.616 5.616 15 C 0.528 3.472 16 O -0.533 6.533 17 C -0.128 4.128 18 C 0.148 3.852 19 H 0.080 0.920 20 O -0.355 6.355 21 C 0.060 3.940 22 C -0.117 4.117 23 C -0.070 4.070 24 C -0.119 4.119 25 C -0.118 4.118 26 C -0.122 4.122 27 C -0.111 4.111 28 C -0.113 4.113 29 C 0.099 3.901 30 H 0.256 0.744 31 H 0.386 0.614 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.106 0.894 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.055 0.945 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.122 0.878 43 H 0.122 0.878 44 H 0.124 0.876 45 H 0.126 0.874 46 H 0.075 0.925 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.127 -28.333 -3.856 29.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.374 4.374 8 H 0.091 0.909 9 N -0.355 5.355 10 C 0.059 3.941 11 H 0.083 0.917 12 C -0.196 4.196 13 C -0.023 4.023 14 N -0.350 5.350 15 C 0.316 3.684 16 O -0.410 6.410 17 C -0.167 4.167 18 C 0.090 3.910 19 H 0.098 0.902 20 O -0.273 6.273 21 C -0.017 4.017 22 C -0.155 4.155 23 C -0.070 4.070 24 C -0.137 4.137 25 C -0.136 4.136 26 C -0.140 4.140 27 C -0.129 4.129 28 C -0.113 4.113 29 C -0.024 4.024 30 H 0.066 0.934 31 H 0.221 0.779 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.124 0.876 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.073 0.927 40 H 0.104 0.896 41 H 0.102 0.898 42 H 0.140 0.860 43 H 0.140 0.860 44 H 0.142 0.858 45 H 0.144 0.856 46 H 0.094 0.906 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.992 -28.169 -3.176 29.197 hybrid contribution 0.132 0.617 -0.418 0.757 sum 7.124 -27.553 -3.594 28.685 Atomic orbital electron populations 1.69674 1.05151 1.25752 1.57201 1.24779 0.95543 0.97828 1.02616 0.86097 0.78791 0.83934 0.77212 1.20481 1.21817 1.21795 1.19264 0.91081 0.83781 1.43260 0.90919 1.42272 1.05839 0.99372 1.88012 1.21303 0.94550 0.85678 0.92546 0.91741 1.23420 1.02822 0.91365 1.02032 1.22103 0.96039 0.97799 0.86318 1.48458 1.54015 1.06514 1.26053 1.19992 0.80692 0.82592 0.85131 1.90714 1.42376 1.83994 1.23929 1.21759 1.03638 0.91821 0.99506 1.20533 0.96699 0.90675 0.83103 0.90239 1.88190 1.77745 1.32186 1.29186 1.22587 0.98635 0.84434 0.96048 1.21190 1.01739 1.00869 0.91654 1.19461 0.97678 0.94065 0.95797 1.21070 1.00476 0.98083 0.94103 1.21127 0.98925 0.98755 0.94808 1.21116 0.98628 0.94291 0.99947 1.21176 1.00009 0.98722 0.92945 1.20263 0.99584 0.96703 0.94744 1.22529 0.97822 0.83289 0.98738 0.93415 0.77948 0.90588 0.90735 0.91926 0.92131 0.87551 0.87977 0.88219 0.92655 0.89603 0.89795 0.86016 0.86003 0.85825 0.85594 0.90615 0.91472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.65 13.06 55.49 0.72 -26.92 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 7 C -0.24 -6.56 9.97 -15.06 -0.15 -6.71 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.71 -17.43 5.26 -51.35 -0.27 -17.70 16 10 C 0.17 3.32 3.70 -65.78 -0.24 3.08 16 11 H 0.06 1.28 8.11 -51.93 -0.42 0.86 16 12 C -0.16 -2.49 6.65 -24.87 -0.17 -2.65 16 13 C 0.10 1.30 6.49 -3.05 -0.02 1.28 16 14 N -0.62 -9.56 3.33 -170.50 -0.57 -10.12 16 15 C 0.53 8.24 7.72 -10.99 -0.08 8.15 16 16 O -0.53 -10.30 15.66 -9.29 -0.15 -10.44 16 17 C -0.13 -1.45 4.30 -27.88 -0.12 -1.57 16 18 C 0.15 1.75 2.28 -27.90 -0.06 1.68 16 19 H 0.08 1.00 7.95 -51.93 -0.41 0.59 16 20 O -0.35 -4.75 9.64 -50.08 -0.48 -5.23 16 21 C 0.06 0.58 6.85 37.14 0.25 0.84 16 22 C -0.12 -0.94 6.00 -27.87 -0.17 -1.11 16 23 C -0.07 -0.66 5.77 -104.68 -0.60 -1.26 16 24 C -0.12 -0.95 9.67 -39.51 -0.38 -1.34 16 25 C -0.12 -0.88 10.05 -39.63 -0.40 -1.28 16 26 C -0.12 -0.94 10.05 -39.64 -0.40 -1.34 16 27 C -0.11 -0.96 9.09 -39.41 -0.36 -1.32 16 28 C -0.11 -1.14 5.46 -104.61 -0.57 -1.71 16 29 C 0.10 1.80 6.54 -2.53 -0.02 1.78 16 30 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.39 10.05 7.73 -40.82 -0.32 9.73 16 32 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 36 H 0.11 0.92 6.31 -51.93 -0.33 0.60 16 37 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.51 8.07 -51.93 -0.42 0.10 16 40 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 43 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 44 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 45 H 0.13 0.90 6.46 -52.49 -0.34 0.56 16 46 H 0.08 1.46 8.04 -51.93 -0.42 1.04 16 47 H 0.07 1.25 8.00 -51.93 -0.42 0.83 16 LS Contribution 380.01 15.07 5.73 5.73 Total: -1.00 -33.12 380.01 -10.89 -44.00 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -7.26 Total: 7.59 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -3.58 Total: -3.88 kcal Atomic # 7 Polarization: -54.64 SS G_CDS: -0.11 Total: -54.75 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: -0.63 Total: -15.67 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.12 -10.89 -44.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970524847.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.257 kcal (2) G-P(sol) polarization free energy of solvation -33.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds