Wall clock time and date at job start Sat Apr 11 2020 02:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99894 * 2 1 4 4 H 1.48504 * 109.46788 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47041 * 299.99656 * 3 2 1 6 6 H 1.48497 * 109.47258 * 59.99785 * 3 2 1 7 7 C 1.38815 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99853 * 163.17555 * 7 2 1 9 9 N 1.36933 * 119.99826 * 343.17890 * 7 2 1 10 10 C 1.46930 * 120.63005 * 151.86766 * 9 7 2 11 11 C 1.53196 * 108.77199 * 126.11515 * 10 9 7 12 12 C 1.53033 * 109.31405 * 54.63584 * 11 10 9 13 13 C 1.53031 * 109.54059 * 298.63287 * 12 11 10 14 14 H 1.09004 * 109.49959 * 301.41515 * 13 12 11 15 15 N 1.46503 * 109.50027 * 181.34964 * 13 12 11 16 16 C 1.34772 * 119.99923 * 154.99977 * 15 13 12 17 17 O 1.21280 * 120.00477 * 359.97438 * 16 15 13 18 18 C 1.50703 * 120.00085 * 180.02562 * 16 15 13 19 19 H 1.08997 * 109.67489 * 305.51933 * 18 16 15 20 20 C 1.53408 * 109.67996 * 66.06312 * 18 16 15 21 21 C 1.53080 * 108.28999 * 184.44905 * 20 18 16 22 22 C 1.50768 * 109.66386 * 311.76479 * 21 20 18 23 23 C 1.38512 * 118.74820 * 197.71862 * 22 21 20 24 24 C 1.38111 * 120.31243 * 180.24456 * 23 22 21 25 25 C 1.38293 * 119.98085 * 359.97438 * 24 23 22 26 26 C 1.37974 * 119.95780 * 359.94188 * 25 24 23 27 27 C 1.38366 * 121.41476 * 17.80483 * 22 21 20 28 28 O 1.35843 * 121.80490 * 359.63128 * 27 22 21 29 29 C 1.46923 * 120.63142 * 331.58665 * 9 7 2 30 30 H 0.97002 * 120.00123 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.58579 * 245.89878 * 10 9 7 32 32 H 1.08997 * 109.58590 * 6.32998 * 10 9 7 33 33 H 1.09004 * 109.49340 * 174.58975 * 11 10 9 34 34 H 1.09001 * 109.49507 * 294.64560 * 11 10 9 35 35 H 1.09007 * 109.46180 * 58.65371 * 12 11 10 36 36 H 1.08998 * 109.45769 * 178.62363 * 12 11 10 37 37 H 0.96999 * 120.00060 * 334.99763 * 15 13 12 38 38 H 1.09003 * 109.70363 * 304.15202 * 20 18 16 39 39 H 1.09010 * 109.69735 * 64.75762 * 20 18 16 40 40 H 1.09000 * 109.42774 * 191.70513 * 21 20 18 41 41 H 1.09000 * 109.40661 * 71.80127 * 21 20 18 42 42 H 1.08000 * 119.84500 * 0.22135 * 23 22 21 43 43 H 1.07997 * 120.00815 * 179.97438 * 24 23 22 44 44 H 1.07993 * 120.02060 * 179.91625 * 25 24 23 45 45 H 1.08001 * 119.88727 * 180.02562 * 26 25 24 46 46 H 1.08999 * 109.59186 * 353.67075 * 29 9 7 47 47 H 1.08997 * 109.58930 * 114.09788 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0556 -1.2223 -0.2702 9 7 1.3695 -2.3625 0.3442 10 6 1.8147 -3.6528 -0.1995 11 6 2.0730 -4.6154 0.9640 12 6 0.8198 -4.7005 1.8382 13 6 0.5037 -3.3189 2.4155 14 1 1.3541 -2.9649 2.9984 15 7 -0.6772 -3.4078 3.2780 16 6 -0.8602 -2.5084 4.2648 17 8 -0.0470 -1.6256 4.4393 18 6 -2.0746 -2.6001 5.1524 19 1 -2.9765 -2.6108 4.5404 20 6 -2.0046 -3.8815 5.9929 21 6 -3.3015 -3.9997 6.7976 22 6 -3.5990 -2.6865 7.4761 23 6 -4.4962 -2.6701 8.5312 24 6 -4.7962 -1.4843 9.1726 25 6 -4.1992 -0.3063 8.7623 26 6 -3.3034 -0.3170 7.7130 27 6 -2.9980 -1.5099 7.0651 28 8 -2.1082 -1.4809 6.0390 29 6 0.2276 -2.3416 1.2685 30 1 -0.4850 0.8401 -0.0004 31 1 1.0404 -4.0628 -0.8479 32 1 2.7338 -3.5121 -0.7682 33 1 2.3110 -5.6043 0.5720 34 1 2.9090 -4.2495 1.5601 35 1 -0.0211 -5.0431 1.2352 36 1 0.9926 -5.4035 2.6531 37 1 -1.3274 -4.1140 3.1387 38 1 -1.8990 -4.7458 5.3372 39 1 -1.1540 -3.8290 6.6726 40 1 -3.1912 -4.7802 7.5504 41 1 -4.1218 -4.2555 6.1270 42 1 -4.9637 -3.5887 8.8535 43 1 -5.4968 -1.4771 9.9945 44 1 -4.4344 0.6214 9.2625 45 1 -2.8375 0.6035 7.3937 46 1 0.0995 -1.3357 1.6685 47 1 -0.6761 -2.6446 0.7398 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008890708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:34:54 Heat of formation + Delta-G solvation = -31.530445 kcal Electronic energy + Delta-G solvation = -28542.017548 eV Core-core repulsion = 24690.078514 eV Total energy + Delta-G solvation = -3851.939034 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.01918 -39.36435 -37.71527 -36.94189 -34.66856 -34.05024 -32.68972 -31.13913 -30.33936 -30.01573 -28.85344 -26.34166 -25.26655 -24.00206 -22.63824 -22.36502 -22.02096 -20.58275 -19.91819 -19.30458 -18.01992 -17.25954 -16.76809 -16.73101 -15.50346 -15.37143 -15.27169 -14.71335 -14.65557 -14.39210 -14.11850 -14.03890 -13.68805 -13.46532 -13.41239 -13.24680 -12.93896 -12.73841 -12.40724 -12.31905 -12.01058 -11.90652 -11.70249 -11.41846 -11.16607 -11.00670 -10.77074 -10.71373 -10.63164 -10.50158 -10.22150 -9.98024 -9.93995 -9.53682 -9.33080 -8.96856 -8.60353 -8.42325 -8.28006 -6.64615 -5.74484 -3.18349 1.13740 1.27708 2.67701 2.89973 3.44278 3.52654 3.53831 3.54735 3.77487 4.32637 4.46108 4.51135 4.55931 4.65791 4.83242 4.90413 5.00134 5.08020 5.25691 5.30330 5.33889 5.38013 5.39551 5.50224 5.53247 5.61908 5.64664 5.68293 5.75542 5.87225 6.05577 6.11490 6.13788 6.27632 6.31292 6.35710 6.40160 6.46155 6.61389 6.67248 6.75359 6.87529 6.94951 7.25941 7.35789 7.72133 7.81062 7.87168 8.48653 8.55455 9.24058 9.87960 10.42531 11.33657 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.014723 B = 0.003169 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.282519 B = 8833.509532 C =10406.181412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.007 3.993 3 Si 0.902 3.098 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.287 1.287 7 C -0.257 4.257 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.142 3.858 11 C -0.131 4.131 12 C -0.115 4.115 13 C 0.118 3.882 14 H 0.083 0.917 15 N -0.715 5.715 16 C 0.517 3.483 17 O -0.506 6.506 18 C 0.076 3.924 19 H 0.097 0.903 20 C -0.148 4.148 21 C -0.075 4.075 22 C -0.166 4.166 23 C -0.085 4.085 24 C -0.157 4.157 25 C -0.088 4.088 26 C -0.146 4.146 27 C 0.138 3.862 28 O -0.285 6.285 29 C 0.166 3.834 30 H 0.253 0.747 31 H 0.018 0.982 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.051 0.949 37 H 0.392 0.608 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.128 0.872 45 H 0.133 0.867 46 H 0.094 0.906 47 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.265 -11.543 15.363 21.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.192 4.192 3 Si 0.731 3.269 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.214 1.214 7 C -0.387 4.387 8 H 0.084 0.916 9 N -0.311 5.311 10 C 0.016 3.984 11 C -0.171 4.171 12 C -0.153 4.153 13 C 0.013 3.987 14 H 0.101 0.899 15 N -0.368 5.368 16 C 0.300 3.700 17 O -0.380 6.380 18 C 0.016 3.984 19 H 0.115 0.885 20 C -0.186 4.186 21 C -0.112 4.112 22 C -0.167 4.167 23 C -0.103 4.103 24 C -0.175 4.175 25 C -0.106 4.106 26 C -0.165 4.165 27 C 0.093 3.907 28 O -0.198 6.198 29 C 0.039 3.961 30 H 0.063 0.937 31 H 0.036 0.964 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.225 0.775 38 H 0.110 0.890 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.099 0.901 42 H 0.141 0.859 43 H 0.140 0.860 44 H 0.146 0.854 45 H 0.151 0.849 46 H 0.113 0.887 47 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -9.596 -10.572 15.402 21.002 hybrid contribution -0.161 0.346 -0.036 0.384 sum -9.757 -10.226 15.366 20.878 Atomic orbital electron populations 1.70014 1.05362 1.25490 1.53370 1.25051 0.95285 0.98536 1.00360 0.86239 0.79403 0.83954 0.77267 1.20181 1.21736 1.21362 1.19176 0.92557 0.84722 1.42203 0.91570 1.43957 1.36145 1.01814 1.49192 1.20963 0.97755 0.86855 0.92852 1.22011 0.96957 0.99383 0.98773 1.21670 0.99005 0.95896 0.98747 1.22034 0.86794 0.97090 0.92749 0.89890 1.45924 1.26788 1.31237 1.32808 1.19749 0.86562 0.82614 0.81059 1.90793 1.44342 1.33005 1.69822 1.22298 0.98856 0.86302 0.90971 0.88538 1.22215 0.99444 0.97101 0.99869 1.20487 0.97208 0.94393 0.99093 1.19838 1.02067 0.94351 1.00450 1.20862 0.96523 0.98292 0.94644 1.20999 1.02263 0.92725 1.01554 1.20934 0.95537 0.98423 0.95670 1.20679 1.00789 0.96567 0.98432 1.18810 0.89957 0.93338 0.88641 1.86122 1.54798 1.41509 1.37357 1.21096 0.88856 0.98867 0.87276 0.93679 0.96365 0.92582 0.92578 0.92092 0.92188 0.93061 0.77452 0.89020 0.89732 0.89625 0.90083 0.85920 0.86001 0.85438 0.84942 0.88738 0.96426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.07 11.20 55.49 0.62 -26.45 16 2 C 0.01 0.20 4.92 -17.43 -0.09 0.11 16 3 Si 0.90 22.83 29.59 -169.99 -5.03 17.80 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 7 C -0.26 -7.27 9.58 -15.06 -0.14 -7.42 16 8 H 0.07 1.83 7.88 -52.49 -0.41 1.42 16 9 N -0.59 -14.97 2.99 -172.32 -0.52 -15.48 16 10 C 0.14 2.92 6.52 -3.71 -0.02 2.90 16 11 C -0.13 -2.18 6.08 -26.61 -0.16 -2.34 16 12 C -0.11 -1.78 5.35 -26.70 -0.14 -1.92 16 13 C 0.12 2.26 2.60 -67.81 -0.18 2.09 16 14 H 0.08 1.83 7.58 -51.93 -0.39 1.44 16 15 N -0.72 -11.22 5.05 -53.69 -0.27 -11.49 16 16 C 0.52 9.19 7.15 -10.99 -0.08 9.11 16 17 O -0.51 -11.88 16.18 -14.20 -0.23 -12.11 16 18 C 0.08 1.05 3.21 -27.67 -0.09 0.96 16 19 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 20 C -0.15 -1.49 5.46 -26.48 -0.14 -1.63 16 21 C -0.07 -0.64 5.86 -27.81 -0.16 -0.80 16 22 C -0.17 -1.84 5.75 -104.44 -0.60 -2.44 16 23 C -0.09 -0.80 9.67 -39.53 -0.38 -1.18 16 24 C -0.16 -1.43 10.05 -39.61 -0.40 -1.83 16 25 C -0.09 -0.88 10.04 -39.66 -0.40 -1.28 16 26 C -0.15 -1.84 9.94 -39.34 -0.39 -2.23 16 27 C 0.14 1.91 6.47 -39.20 -0.25 1.65 16 28 O -0.29 -4.70 9.47 -39.00 -0.37 -5.07 16 29 C 0.17 4.04 4.89 -3.71 -0.02 4.02 16 30 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.39 4.53 8.45 -40.82 -0.34 4.19 16 38 H 0.09 0.69 7.97 -51.93 -0.41 0.27 16 39 H 0.08 0.95 8.14 -51.92 -0.42 0.53 16 40 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 43 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 44 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 45 H 0.13 1.65 8.06 -52.49 -0.42 1.22 16 46 H 0.09 2.74 6.06 -51.93 -0.31 2.43 16 47 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 377.15 15.07 5.68 5.68 Total: -1.00 -35.23 377.15 -11.11 -46.33 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -7.35 Total: 3.01 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -3.65 Total: -2.23 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: -0.16 Total: -53.42 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: -0.60 Total: -17.18 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.03 Total: 17.80 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.23 -11.11 -46.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008890708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.803 kcal (2) G-P(sol) polarization free energy of solvation -35.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds