Wall clock time and date at job start Sat Apr 11 2020 02:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86794 * 119.99756 * 2 1 4 4 H 1.48498 * 109.47352 * 239.99841 * 3 2 1 5 5 H 1.48494 * 109.47319 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.46833 * 120.00357 * 3 2 1 7 7 C 1.38814 * 119.99855 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99630 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00130 * 359.97438 * 7 2 1 10 10 C 1.46506 * 120.00012 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.46919 * 34.99592 * 10 9 7 12 12 C 1.52998 * 109.47283 * 154.99829 * 10 9 7 13 13 C 1.53003 * 109.47174 * 179.97438 * 12 10 9 14 14 C 1.52994 * 109.46915 * 299.99971 * 13 12 10 15 15 H 1.08997 * 109.47419 * 299.99553 * 14 13 12 16 16 N 1.46497 * 109.46811 * 179.97438 * 14 13 12 17 17 C 1.34776 * 120.00139 * 155.00334 * 16 14 13 18 18 O 1.21585 * 120.00309 * 359.97438 * 17 16 14 19 19 C 1.47605 * 120.00159 * 180.02562 * 17 16 14 20 20 C 1.39755 * 120.26649 * 359.97438 * 19 17 16 21 21 C 1.37466 * 120.20192 * 180.15382 * 20 19 17 22 22 C 1.39599 * 120.43382 * 0.02710 * 21 20 19 23 23 C 1.39186 * 119.09704 * 359.60691 * 22 21 20 24 24 C 1.37303 * 120.93923 * 0.56712 * 23 22 21 25 25 C 1.51672 * 106.98932 * 180.58015 * 23 22 21 26 26 C 1.54707 * 101.87897 * 15.71977 * 25 23 22 27 27 O 1.35990 * 129.71140 * 179.55663 * 22 21 20 28 28 C 1.52998 * 109.47176 * 60.00030 * 14 13 12 29 29 C 1.52998 * 109.47225 * 299.99473 * 28 14 13 30 30 H 0.96993 * 120.00042 * 359.97438 * 1 2 3 31 31 H 0.97002 * 120.00368 * 359.97438 * 9 7 2 32 32 H 1.09009 * 109.47248 * 59.99644 * 12 10 9 33 33 H 1.08999 * 109.47306 * 299.99903 * 12 10 9 34 34 H 1.08999 * 109.46606 * 179.97438 * 13 12 10 35 35 H 1.08997 * 109.46712 * 59.99957 * 13 12 10 36 36 H 0.96998 * 120.00481 * 335.00192 * 16 14 13 37 37 H 1.07992 * 119.89749 * 0.13919 * 20 19 17 38 38 H 1.07997 * 119.78283 * 180.02562 * 21 20 19 39 39 H 1.08002 * 120.07107 * 179.60940 * 24 23 22 40 40 H 1.08997 * 110.95103 * 257.57296 * 25 23 22 41 41 H 1.09001 * 110.94885 * 133.86663 * 25 23 22 42 42 H 1.09003 * 110.73784 * 92.91464 * 26 25 23 43 43 H 1.08999 * 110.73878 * 216.24444 * 26 25 23 44 44 H 1.08997 * 109.46990 * 60.00169 * 28 14 13 45 45 H 1.09008 * 109.47112 * 179.97438 * 28 14 13 46 46 H 1.08997 * 109.46963 * 300.00228 * 29 28 14 47 47 H 1.09000 * 109.46932 * 179.97438 * 29 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6965 -1.2124 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 1 2.9689 -3.5505 0.5888 12 6 1.1810 -4.7522 0.6091 13 6 1.9458 -6.0774 0.6085 14 6 2.3091 -6.4558 -0.8287 15 1 1.3982 -6.5618 -1.4178 16 7 3.0419 -7.7243 -0.8292 17 6 3.0329 -8.5074 -1.9261 18 8 2.4162 -8.1613 -2.9151 19 6 3.7708 -9.7858 -1.9264 20 6 4.4811 -10.1894 -0.7925 21 6 5.1704 -11.3787 -0.7953 22 6 5.1689 -12.1942 -1.9284 23 6 4.4534 -11.7905 -3.0519 24 6 3.7644 -10.6029 -3.0609 25 6 4.6270 -12.8727 -4.1003 26 6 5.1647 -14.0516 -3.2550 27 8 5.7837 -13.3886 -2.1400 28 6 3.1862 -5.3605 -1.4383 29 6 2.4214 -4.0353 -1.4378 30 1 -0.4850 0.8400 0.0004 31 1 0.3556 -2.3881 0.0002 32 1 0.2702 -4.8584 0.0197 33 1 0.9218 -4.4823 1.6329 34 1 1.3210 -6.8575 1.0433 35 1 2.8567 -5.9713 1.1977 36 1 3.5336 -8.0007 -0.0401 37 1 4.4886 -9.5649 0.0885 38 1 5.7167 -11.6842 0.0848 39 1 3.2190 -10.3003 -3.9426 40 1 5.3532 -12.5713 -4.8551 41 1 3.6718 -13.1266 -4.5601 42 1 4.3476 -14.6902 -2.9194 43 1 5.8994 -14.6269 -3.8184 44 1 4.0972 -5.2546 -0.8492 45 1 3.4454 -5.6303 -2.4622 46 1 1.5106 -4.1414 -2.0270 47 1 3.0466 -3.2549 -1.8717 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034742913.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:35:32 Heat of formation + Delta-G solvation = -65.160163 kcal Electronic energy + Delta-G solvation = -27216.048090 eV Core-core repulsion = 23362.650762 eV Total energy + Delta-G solvation = -3853.397328 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.19785 -41.09785 -39.41590 -38.00437 -36.38861 -34.73109 -33.72751 -32.57127 -31.68312 -31.32537 -30.26982 -28.80201 -25.83463 -24.80557 -24.09027 -23.58342 -22.84765 -22.39564 -21.40740 -20.83582 -19.19102 -18.64336 -18.41979 -17.76351 -17.18124 -16.89864 -16.76059 -16.13493 -15.98177 -15.46929 -15.35155 -15.15516 -15.04157 -14.67051 -14.60546 -14.21236 -14.02753 -13.96817 -13.63941 -13.49436 -13.37185 -13.14460 -13.07408 -12.79234 -12.67774 -12.43070 -12.30566 -12.17126 -12.02347 -11.89154 -11.79617 -11.65237 -11.45182 -11.19914 -11.02097 -10.81232 -10.09250 -10.01819 -9.23606 -8.98001 -7.92089 -5.20102 -0.23455 0.24562 1.47141 1.50187 1.56111 1.75050 2.08579 2.24777 2.57742 2.75198 3.40268 3.40444 3.59607 3.67378 3.78344 3.83309 3.87898 3.92069 4.12510 4.14455 4.18494 4.31110 4.38681 4.41703 4.46537 4.54333 4.61133 4.63210 4.66862 4.78961 4.84884 4.87156 4.98416 5.01676 5.06546 5.13187 5.15408 5.23217 5.26219 5.26737 5.29878 5.40302 5.48243 5.54564 5.56617 5.65362 6.06193 6.30516 6.56387 7.22772 7.35907 8.14045 8.36293 9.31348 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.035777 B = 0.001866 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.441125 B =15001.514228 C =15093.264062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.079 4.079 3 Si 0.971 3.029 4 H -0.281 1.281 5 H -0.297 1.297 6 H -0.276 1.276 7 C -0.237 4.237 8 H 0.075 0.925 9 N -0.739 5.739 10 C 0.172 3.828 11 H 0.049 0.951 12 C -0.113 4.113 13 C -0.105 4.105 14 C 0.153 3.847 15 H 0.064 0.936 16 N -0.704 5.704 17 C 0.560 3.440 18 O -0.586 6.586 19 C -0.179 4.179 20 C -0.038 4.038 21 C -0.148 4.148 22 C 0.121 3.879 23 C -0.195 4.195 24 C -0.025 4.025 25 C -0.111 4.111 26 C 0.048 3.952 27 O -0.316 6.316 28 C -0.112 4.112 29 C -0.123 4.123 30 H 0.250 0.750 31 H 0.371 0.629 32 H 0.052 0.948 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.416 0.584 37 H 0.168 0.832 38 H 0.159 0.841 39 H 0.126 0.874 40 H 0.100 0.900 41 H 0.108 0.892 42 H 0.092 0.908 43 H 0.134 0.866 44 H 0.078 0.922 45 H 0.045 0.955 46 H 0.038 0.962 47 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.415 -32.685 -1.501 34.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.271 4.271 3 Si 0.800 3.200 4 H -0.207 1.207 5 H -0.223 1.223 6 H -0.202 1.202 7 C -0.369 4.369 8 H 0.093 0.907 9 N -0.378 5.378 10 C 0.064 3.936 11 H 0.067 0.933 12 C -0.152 4.152 13 C -0.143 4.143 14 C 0.048 3.952 15 H 0.083 0.917 16 N -0.355 5.355 17 C 0.349 3.651 18 O -0.467 6.467 19 C -0.183 4.183 20 C -0.057 4.057 21 C -0.166 4.166 22 C 0.075 3.925 23 C -0.196 4.196 24 C -0.044 4.044 25 C -0.147 4.147 26 C -0.026 4.026 27 O -0.230 6.230 28 C -0.152 4.152 29 C -0.164 4.164 30 H 0.058 0.942 31 H 0.203 0.797 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.254 0.746 37 H 0.185 0.815 38 H 0.176 0.824 39 H 0.144 0.856 40 H 0.118 0.882 41 H 0.126 0.874 42 H 0.110 0.890 43 H 0.151 0.849 44 H 0.096 0.904 45 H 0.064 0.936 46 H 0.056 0.944 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 12.311 -32.430 -2.045 34.749 hybrid contribution -0.234 1.367 -0.348 1.430 sum 12.077 -31.063 -2.393 33.414 Atomic orbital electron populations 1.69816 1.06575 1.25948 1.59854 1.25554 0.96375 1.01054 1.04154 0.85243 0.77191 0.79402 0.78136 1.20749 1.22316 1.20175 1.19596 0.91394 0.85338 1.40545 0.90695 1.42669 1.05439 1.01136 1.88584 1.20502 0.94612 0.85030 0.93467 0.93274 1.21641 0.98360 0.94150 1.01069 1.21657 1.01887 0.96626 0.94174 1.20870 0.94370 0.82000 0.97940 0.91743 1.45806 1.52746 1.20670 1.16307 1.18455 0.79847 0.84062 0.82738 1.90775 1.45881 1.75044 1.35009 1.19723 1.05344 0.96052 0.97160 1.21295 0.92245 0.94939 0.97179 1.20498 1.04169 0.94807 0.97147 1.20177 0.91064 0.86932 0.94364 1.20962 1.03425 0.98154 0.97031 1.20376 0.95104 0.91392 0.97555 1.21932 1.04305 0.91578 0.96924 1.24185 0.99362 0.94581 0.84506 1.86781 1.54756 1.29225 1.52209 1.21767 0.99051 0.93900 1.00440 1.22030 0.98942 0.95852 0.99542 0.94175 0.79739 0.92966 0.91293 0.89175 0.89105 0.74574 0.81503 0.82366 0.85623 0.88171 0.87409 0.88956 0.84862 0.90381 0.93590 0.94358 0.94143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.41 13.06 21.65 0.28 -60.13 16 2 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 3 Si 0.97 46.82 29.55 68.60 2.03 48.84 16 4 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 5 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 6 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 7 C -0.24 -13.28 9.93 84.03 0.83 -12.45 16 8 H 0.08 4.03 7.83 -2.91 -0.02 4.00 16 9 N -0.74 -37.67 5.12 -322.93 -1.65 -39.33 16 10 C 0.17 6.67 2.77 44.99 0.12 6.79 16 11 H 0.05 1.89 8.08 -2.39 -0.02 1.87 16 12 C -0.11 -3.48 5.39 30.59 0.16 -3.32 16 13 C -0.11 -2.26 5.39 30.59 0.16 -2.09 16 14 C 0.15 3.84 2.45 44.99 0.11 3.95 16 15 H 0.06 1.99 7.58 -2.39 -0.02 1.97 16 16 N -0.70 -13.98 5.03 -445.65 -2.24 -16.22 16 17 C 0.56 14.11 7.73 86.72 0.67 14.78 16 18 O -0.59 -20.30 16.02 -3.98 -0.06 -20.37 16 19 C -0.18 -3.57 5.88 -20.06 -0.12 -3.69 16 20 C -0.04 -0.50 9.52 22.45 0.21 -0.29 16 21 C -0.15 -1.94 10.05 22.42 0.23 -1.72 16 22 C 0.12 1.95 7.05 22.83 0.16 2.11 16 23 C -0.19 -3.22 6.25 -19.55 -0.12 -3.34 16 24 C -0.03 -0.51 9.58 22.43 0.21 -0.30 16 25 C -0.11 -1.07 7.12 30.74 0.22 -0.86 16 26 C 0.05 0.36 8.00 72.56 0.58 0.94 16 27 O -0.32 -4.68 11.09 -93.44 -1.04 -5.72 16 28 C -0.11 -3.28 5.49 30.59 0.17 -3.12 16 29 C -0.12 -4.58 5.50 30.59 0.17 -4.41 16 30 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 31 H 0.37 20.43 7.80 -92.71 -0.72 19.71 16 32 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 33 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.42 4.93 6.64 -92.71 -0.62 4.31 16 37 H 0.17 1.02 6.40 -2.91 -0.02 1.00 16 38 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16 39 H 0.13 2.78 7.66 -2.91 -0.02 2.76 16 40 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 43 H 0.13 0.33 8.14 -2.39 -0.02 0.31 16 44 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 45 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 46 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -76.39 380.86 1.22 -75.18 By element: Atomic # 1 Polarization: 29.25 SS G_CDS: -0.35 Total: 28.90 kcal Atomic # 6 Polarization: -15.41 SS G_CDS: 4.25 Total: -11.16 kcal Atomic # 7 Polarization: -112.07 SS G_CDS: -3.61 Total: -115.68 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -1.10 Total: -26.08 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.84 kcal Total: -76.39 1.22 -75.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034742913.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.016 kcal (2) G-P(sol) polarization free energy of solvation -76.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds