Wall clock time and date at job start Sat Apr 11 2020 02:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86806 * 120.00121 * 2 1 4 4 H 1.48502 * 109.47094 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47095 * 300.00153 * 3 2 1 6 6 H 1.48494 * 109.47258 * 60.00276 * 3 2 1 7 7 C 1.38816 * 120.00273 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00053 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99276 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.64394 * 180.02562 * 9 7 2 11 11 C 1.54908 * 104.83420 * 204.08983 * 10 9 7 12 12 H 1.09008 * 111.00266 * 81.10397 * 11 10 9 13 13 N 1.46501 * 111.00865 * 204.91722 * 11 10 9 14 14 C 1.34774 * 120.00108 * 273.54960 * 13 11 10 15 15 O 1.21558 * 120.00056 * 359.97438 * 14 13 11 16 16 C 1.47844 * 120.00224 * 180.02562 * 14 13 11 17 17 C 1.39600 * 120.13956 * 353.28428 * 16 14 13 18 18 C 1.37938 * 119.84757 * 179.97438 * 17 16 14 19 19 C 1.38377 * 120.14651 * 359.97438 * 18 17 16 20 20 C 1.38335 * 120.29283 * 0.02562 * 19 18 17 21 21 C 1.37977 * 120.14674 * 359.78275 * 20 19 18 22 22 C 1.50696 * 120.07499 * 180.22885 * 21 20 19 23 23 C 1.53783 * 113.61330 * 29.49965 * 22 21 20 24 24 C 1.53780 * 87.08084 * 220.01450 * 23 22 21 25 25 C 1.53775 * 87.08178 * 25.43302 * 24 23 22 26 26 C 1.55398 * 101.66647 * 323.08124 * 11 10 9 27 27 H 1.08998 * 110.86037 * 153.69591 * 26 11 10 28 28 O 1.42901 * 110.69458 * 277.04551 * 26 11 10 29 29 C 1.47014 * 125.65318 * 359.97438 * 9 7 2 30 30 H 0.97001 * 119.99522 * 359.97438 * 1 2 3 31 31 H 1.08999 * 110.37166 * 322.93282 * 10 9 7 32 32 H 1.09008 * 110.36770 * 85.25645 * 10 9 7 33 33 H 0.96994 * 119.99990 * 93.54479 * 13 11 10 34 34 H 1.07991 * 120.07539 * 359.97438 * 17 16 14 35 35 H 1.07998 * 119.92471 * 180.02562 * 18 17 16 36 36 H 1.08002 * 119.85126 * 180.02562 * 19 18 17 37 37 H 1.08004 * 119.92417 * 180.02562 * 20 19 18 38 38 H 1.09004 * 112.85164 * 160.79931 * 22 21 20 39 39 H 1.08997 * 113.61592 * 334.56452 * 23 22 21 40 40 H 1.09004 * 113.61454 * 105.46463 * 23 22 21 41 41 H 1.09001 * 113.61711 * 270.88038 * 24 23 22 42 42 H 1.09004 * 113.69177 * 139.98893 * 24 23 22 43 43 H 1.09006 * 113.61656 * 220.01837 * 25 24 23 44 44 H 1.09004 * 113.61879 * 89.11586 * 25 24 23 45 45 H 0.96696 * 114.00795 * 174.82361 * 28 26 11 46 46 H 1.08999 * 109.88129 * 298.39118 * 29 9 7 47 47 H 1.08996 * 109.88342 * 59.40426 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 1.9334 -3.7311 -0.0017 11 6 0.8520 -4.6558 -0.6142 12 1 0.8576 -4.5960 -1.7026 13 7 1.0290 -6.0394 -0.1663 14 6 1.8616 -6.8626 -0.8339 15 8 2.4652 -6.4571 -1.8080 16 6 2.0398 -8.2590 -0.3822 17 6 1.4593 -8.6888 0.8123 18 6 1.6291 -9.9932 1.2277 19 6 2.3724 -10.8749 0.4630 20 6 2.9503 -10.4553 -0.7217 21 6 2.7850 -9.1544 -1.1507 22 6 3.4109 -8.7004 -2.4441 23 6 3.5579 -9.8230 -3.4848 24 6 4.9295 -9.2183 -3.8278 25 6 4.9472 -8.6476 -2.4000 26 6 -0.4519 -4.0433 -0.0315 27 1 -1.3016 -4.2477 -0.6829 28 8 -0.6951 -4.5350 1.2880 29 6 -0.1375 -2.5327 -0.0017 30 1 -0.4849 0.8401 0.0004 31 1 2.8331 -3.7403 -0.6169 32 1 2.1660 -4.0424 1.0167 33 1 0.5471 -6.3630 0.6108 34 1 0.8786 -8.0018 1.4098 35 1 1.1801 -10.3272 2.1515 36 1 2.5019 -11.8952 0.7926 37 1 3.5289 -11.1486 -1.3142 38 1 2.9541 -7.7934 -2.8401 39 1 3.6172 -10.8194 -3.0468 40 1 2.8367 -9.7601 -4.2998 41 1 4.8879 -8.4534 -4.6033 42 1 5.7038 -9.9637 -4.0097 43 1 5.3478 -7.6356 -2.3391 44 1 5.3864 -9.3225 -1.6653 45 1 -1.4525 -4.1248 1.7274 46 1 -0.5544 -2.0850 0.9004 47 1 -0.5578 -2.0493 -0.8836 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084007019.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:35:44 Heat of formation + Delta-G solvation = 0.191890 kcal Electronic energy + Delta-G solvation = -28537.338919 eV Core-core repulsion = 24686.775468 eV Total energy + Delta-G solvation = -3850.563451 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.68825 -39.09247 -37.87151 -37.56601 -34.84911 -34.06179 -31.96438 -31.31401 -30.96450 -28.46324 -27.10387 -25.64115 -25.59543 -24.53452 -23.57528 -22.01515 -20.81206 -20.33877 -19.98416 -19.08712 -17.97848 -17.15814 -16.76163 -16.35718 -15.61794 -15.43825 -15.00577 -14.80825 -14.73083 -14.54963 -14.40757 -14.02408 -13.68702 -13.15484 -13.09164 -12.77904 -12.58721 -12.49889 -12.39490 -12.20240 -12.02886 -11.89906 -11.53807 -11.30880 -10.96725 -10.86246 -10.76411 -10.52308 -10.44279 -10.36737 -10.27358 -10.08272 -9.82890 -9.39630 -9.21242 -9.10186 -8.84339 -8.68861 -8.57544 -6.88184 -5.75852 -3.08599 0.79435 1.20568 2.94363 3.32599 3.39550 3.45562 3.48006 3.77378 4.46274 4.51733 4.52910 4.57750 4.72036 4.76314 4.79322 4.88731 5.01760 5.07516 5.21874 5.27639 5.34128 5.37966 5.53203 5.61975 5.65232 5.69074 5.71519 5.79642 5.84286 5.85927 5.95501 6.04246 6.05942 6.13275 6.17357 6.21748 6.28227 6.37469 6.55784 6.67342 6.73828 6.83438 6.95858 7.31302 7.43085 7.71977 7.81096 8.05524 8.18849 8.46930 9.17268 9.77327 10.41640 11.36545 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.016133 B = 0.003007 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.187597 B = 9308.473027 C =10483.707392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.010 4.010 3 Si 0.914 3.086 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.223 4.223 8 H 0.080 0.920 9 N -0.601 5.601 10 C 0.132 3.868 11 C 0.140 3.860 12 H 0.103 0.897 13 N -0.702 5.702 14 C 0.554 3.446 15 O -0.531 6.531 16 C -0.130 4.130 17 C -0.083 4.083 18 C -0.135 4.135 19 C -0.096 4.096 20 C -0.132 4.132 21 C -0.008 4.008 22 C -0.100 4.100 23 C -0.141 4.141 24 C -0.140 4.140 25 C -0.124 4.124 26 C 0.068 3.932 27 H 0.062 0.938 28 O -0.569 6.569 29 C 0.153 3.847 30 H 0.252 0.748 31 H 0.046 0.954 32 H 0.025 0.975 33 H 0.406 0.594 34 H 0.128 0.872 35 H 0.126 0.874 36 H 0.124 0.876 37 H 0.128 0.872 38 H 0.148 0.852 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.081 0.919 42 H 0.063 0.937 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.381 0.619 46 H 0.053 0.947 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.319 -22.874 -0.630 22.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.206 4.206 3 Si 0.745 3.255 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.351 4.351 8 H 0.098 0.902 9 N -0.328 5.328 10 C 0.005 3.995 11 C 0.034 3.966 12 H 0.121 0.879 13 N -0.353 5.353 14 C 0.342 3.658 15 O -0.410 6.410 16 C -0.133 4.133 17 C -0.101 4.101 18 C -0.153 4.153 19 C -0.114 4.114 20 C -0.150 4.150 21 C -0.009 4.009 22 C -0.117 4.117 23 C -0.178 4.178 24 C -0.177 4.177 25 C -0.161 4.161 26 C 0.008 3.992 27 H 0.080 0.920 28 O -0.376 6.376 29 C 0.028 3.972 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.043 0.957 33 H 0.242 0.758 34 H 0.146 0.854 35 H 0.144 0.856 36 H 0.142 0.858 37 H 0.145 0.855 38 H 0.165 0.835 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.099 0.901 42 H 0.082 0.918 43 H 0.090 0.910 44 H 0.093 0.907 45 H 0.229 0.771 46 H 0.071 0.929 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.212 -22.679 -1.461 22.834 hybrid contribution -0.389 1.085 0.720 1.359 sum 1.823 -21.594 -0.742 21.684 Atomic orbital electron populations 1.69919 1.04908 1.25000 1.57658 1.24791 0.95786 0.97712 1.02262 0.85996 0.78796 0.83516 0.77207 1.20437 1.21712 1.21763 1.19149 0.90605 0.82148 1.43226 0.90192 1.44290 1.01219 0.99944 1.87303 1.21829 0.94632 0.85654 0.97401 1.22404 0.95415 0.79415 0.99321 0.87911 1.45734 1.45405 1.11803 1.32337 1.18306 0.79351 0.85124 0.83057 1.90577 1.47385 1.76226 1.26842 1.19871 1.02369 0.94142 0.96963 1.21383 0.97452 0.96315 0.94975 1.21064 1.00375 0.93485 1.00421 1.21304 0.96168 0.99545 0.94382 1.21035 1.01322 0.95668 0.97008 1.19908 0.93354 0.92400 0.95258 1.22440 0.96196 1.01369 0.91712 1.23102 0.97632 0.98065 0.98987 1.22775 0.97214 1.00297 0.97441 1.22835 0.95072 1.01589 0.96651 1.23551 0.95445 0.96940 0.83269 0.92013 1.86222 1.54627 1.67127 1.29599 1.21872 0.85620 0.87689 1.02018 0.93784 0.93605 0.95701 0.75779 0.85391 0.85582 0.85847 0.85465 0.83503 0.90346 0.91542 0.90050 0.91780 0.91045 0.90741 0.77136 0.92920 0.92582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.74 10.31 55.49 0.57 -26.17 16 2 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 3 Si 0.91 22.23 29.55 -169.99 -5.02 17.20 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 7 C -0.22 -6.30 10.28 -15.06 -0.15 -6.46 16 8 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 9 N -0.60 -15.49 3.39 -170.08 -0.58 -16.07 16 10 C 0.13 2.93 6.92 -2.53 -0.02 2.91 16 11 C 0.14 2.60 3.20 -65.65 -0.21 2.39 16 12 H 0.10 2.01 7.73 -51.92 -0.40 1.61 16 13 N -0.70 -11.04 5.13 -52.54 -0.27 -11.31 16 14 C 0.55 8.91 7.72 -12.33 -0.10 8.82 16 15 O -0.53 -9.88 12.87 5.31 0.07 -9.81 16 16 C -0.13 -1.75 5.87 -104.97 -0.62 -2.37 16 17 C -0.08 -0.92 9.52 -39.18 -0.37 -1.29 16 18 C -0.14 -1.25 10.03 -39.64 -0.40 -1.65 16 19 C -0.10 -0.84 10.04 -39.49 -0.40 -1.24 16 20 C -0.13 -1.33 9.01 -39.64 -0.36 -1.68 16 21 C -0.01 -0.10 5.31 -104.23 -0.55 -0.65 16 22 C -0.10 -1.26 3.24 -90.96 -0.30 -1.55 16 23 C -0.14 -1.41 7.43 -25.92 -0.19 -1.60 16 24 C -0.14 -1.38 8.08 -25.92 -0.21 -1.59 16 25 C -0.12 -1.43 7.58 -25.92 -0.20 -1.63 16 26 C 0.07 1.21 4.22 -24.76 -0.10 1.11 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 28 O -0.57 -8.94 12.15 -35.23 -0.43 -9.37 16 29 C 0.15 3.57 5.13 -3.07 -0.02 3.56 16 30 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.03 0.57 8.14 -51.92 -0.42 0.15 16 33 H 0.41 5.66 5.65 -40.82 -0.23 5.43 16 34 H 0.13 1.26 6.46 -52.49 -0.34 0.92 16 35 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 36 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 37 H 0.13 1.03 6.20 -52.48 -0.33 0.71 16 38 H 0.15 2.28 4.91 -52.52 -0.26 2.02 16 39 H 0.08 0.67 5.96 -51.93 -0.31 0.36 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.07 0.79 7.98 -51.93 -0.41 0.37 16 45 H 0.38 4.68 9.09 45.56 0.41 5.09 16 46 H 0.05 1.33 7.42 -51.93 -0.39 0.95 16 47 H 0.06 1.44 7.37 -51.93 -0.38 1.05 16 LS Contribution 371.84 15.07 5.60 5.60 Total: -1.00 -32.10 371.84 -10.32 -42.41 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -5.98 Total: 10.80 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -4.28 Total: -3.30 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: -0.27 Total: -53.54 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.36 Total: -19.18 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.10 -10.32 -42.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084007019.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.607 kcal (2) G-P(sol) polarization free energy of solvation -32.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds