Wall clock time and date at job start Sat Apr 11 2020 02:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86795 * 119.99816 * 2 1 4 4 H 1.48505 * 109.47308 * 270.00017 * 3 2 1 5 5 H 1.48501 * 109.47492 * 30.00271 * 3 2 1 6 6 H 1.48506 * 109.47191 * 150.00179 * 3 2 1 7 7 C 1.38809 * 119.99906 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99940 * 197.68105 * 7 2 1 9 9 N 1.36935 * 120.00017 * 17.68444 * 7 2 1 10 10 C 1.46968 * 120.59220 * 208.91675 * 9 7 2 11 11 C 1.53369 * 108.63578 * 235.24486 * 10 9 7 12 12 N 1.46961 * 108.63678 * 310.57674 * 11 10 9 13 13 C 1.34769 * 120.59673 * 235.20186 * 12 11 10 14 14 O 1.21592 * 119.99889 * 356.31938 * 13 12 11 15 15 C 1.47535 * 120.00178 * 176.31954 * 13 12 11 16 16 C 1.39710 * 120.19196 * 53.70271 * 15 13 12 17 17 C 1.37785 * 119.90990 * 179.97438 * 16 15 13 18 18 C 1.38549 * 120.29745 * 359.97438 * 17 16 15 19 19 C 1.38048 * 120.39581 * 0.02562 * 18 17 16 20 20 C 1.38717 * 120.08136 * 359.97438 * 19 18 17 21 21 O 1.35653 * 120.15003 * 180.02562 * 20 19 18 22 22 C 1.42903 * 117.00001 * 5.24718 * 21 20 19 23 23 C 1.53775 * 113.61666 * 254.90826 * 22 21 20 24 24 C 1.53780 * 87.08336 * 220.02076 * 23 22 21 25 25 C 1.53776 * 87.08001 * 25.43292 * 24 23 22 26 26 C 1.46973 * 118.81072 * 55.47597 * 12 11 10 27 27 C 1.46961 * 120.59671 * 28.93837 * 9 7 2 28 28 H 0.96997 * 119.99801 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.61002 * 115.50076 * 10 9 7 30 30 H 1.08997 * 109.60788 * 354.99394 * 10 9 7 31 31 H 1.08999 * 109.60866 * 190.82862 * 11 10 9 32 32 H 1.09003 * 109.60903 * 70.32119 * 11 10 9 33 33 H 1.08005 * 120.04239 * 0.25181 * 16 15 13 34 34 H 1.07999 * 119.85126 * 179.97438 * 17 16 15 35 35 H 1.08001 * 119.79864 * 179.97438 * 18 17 16 36 36 H 1.08001 * 119.96208 * 180.02562 * 19 18 17 37 37 H 1.09006 * 112.84851 * 26.21585 * 22 21 20 38 38 H 1.09001 * 113.61498 * 334.57164 * 23 22 21 39 39 H 1.09001 * 113.61601 * 105.47105 * 23 22 21 40 40 H 1.09003 * 113.61273 * 270.88529 * 24 23 22 41 41 H 1.08999 * 113.61649 * 139.98350 * 24 23 22 42 42 H 1.09002 * 113.61720 * 220.02206 * 25 24 23 43 43 H 1.09000 * 113.69148 * 89.12565 * 25 24 23 44 44 H 1.09004 * 109.60391 * 64.26721 * 26 12 11 45 45 H 1.08996 * 109.60939 * 184.77766 * 26 12 11 46 46 H 1.09003 * 109.60936 * 244.49890 * 27 9 7 47 47 H 1.08999 * 109.61255 * 5.00897 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0520 -1.2241 0.2846 9 7 1.3741 -2.3602 -0.3592 10 6 1.8020 -3.6520 0.1956 11 6 2.1181 -4.6034 -0.9651 12 7 0.9956 -4.5767 -1.9132 13 6 0.3701 -5.7165 -2.2679 14 8 0.7752 -6.7861 -1.8552 15 6 -0.8063 -5.6665 -3.1569 16 6 -0.7297 -5.0091 -4.3873 17 6 -1.8318 -4.9664 -5.2132 18 6 -3.0167 -5.5733 -4.8296 19 6 -3.1062 -6.2263 -3.6166 20 6 -2.0066 -6.2792 -2.7726 21 8 -2.0929 -6.9209 -1.5806 22 6 -3.3090 -7.6194 -1.3063 23 6 -4.2176 -6.9009 -0.2950 24 6 -4.5168 -8.2863 0.3016 25 6 -3.1562 -8.7341 -0.2580 26 6 0.5713 -3.2854 -2.4723 27 6 0.2516 -2.3335 -1.3073 28 1 -0.4850 0.8400 0.0004 29 1 1.0016 -4.0717 0.8049 30 1 2.6939 -3.5106 0.8060 31 1 2.2502 -5.6156 -0.5828 32 1 3.0290 -4.2776 -1.4674 33 1 0.1934 -4.5388 -4.6925 34 1 -1.7716 -4.4576 -6.1639 35 1 -3.8757 -5.5346 -5.4831 36 1 -4.0332 -6.6974 -3.3247 37 1 -3.8270 -7.9386 -2.2108 38 1 -3.6784 -6.2402 0.3840 39 1 -5.0862 -6.4245 -0.7498 40 1 -5.3662 -8.7874 -0.1626 41 1 -4.5642 -8.2918 1.3906 42 1 -3.1678 -9.7378 -0.6830 43 1 -2.3259 -8.5754 0.4302 44 1 1.3746 -2.8681 -3.0794 45 1 -0.3185 -3.4271 -3.0858 46 1 -0.6593 -2.6593 -0.8050 47 1 0.1195 -1.3213 -1.6895 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073100613.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:34:44 Heat of formation + Delta-G solvation = -2.317421 kcal Electronic energy + Delta-G solvation = -29142.529386 eV Core-core repulsion = 25291.857123 eV Total energy + Delta-G solvation = -3850.672262 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.85032 -40.75601 -39.20965 -38.34248 -37.25323 -35.61021 -33.53231 -32.36522 -31.54352 -30.94078 -28.73201 -26.71193 -26.46478 -25.91638 -24.71847 -24.22072 -23.07195 -22.18046 -20.75547 -20.41432 -19.40348 -18.77620 -17.83641 -17.53689 -17.01157 -16.71818 -16.48701 -16.28911 -15.98125 -15.72201 -15.50873 -15.33358 -15.22624 -15.08954 -14.89481 -14.58556 -13.90760 -13.69167 -13.51638 -13.34400 -13.29493 -13.13539 -12.76144 -12.67946 -12.52182 -12.44341 -12.32763 -12.24386 -12.08704 -11.97974 -11.89600 -11.70052 -11.40929 -11.22802 -10.88812 -10.61267 -9.96362 -9.85354 -9.20029 -8.68282 -7.89918 -5.39581 0.03000 0.40798 1.49215 1.50217 1.59428 1.63046 2.04147 2.23193 2.50684 2.74979 3.24577 3.46534 3.49935 3.54433 3.56706 3.72771 3.80521 3.89783 4.01444 4.17124 4.19879 4.21394 4.31666 4.40485 4.47756 4.50707 4.57449 4.59521 4.70762 4.72035 4.72365 4.76743 4.86739 4.92140 4.98078 5.01075 5.04965 5.17261 5.21478 5.33746 5.36018 5.47426 5.48606 5.57935 5.63299 5.80666 6.33470 6.38837 6.49805 7.08182 7.11883 7.75087 8.30954 9.15768 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.013127 B = 0.003559 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.576250 B = 7865.030593 C = 8299.805328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.043 4.043 3 Si 0.971 3.029 4 H -0.280 1.280 5 H -0.296 1.296 6 H -0.270 1.270 7 C -0.269 4.269 8 H 0.071 0.929 9 N -0.607 5.607 10 C 0.134 3.866 11 C 0.106 3.894 12 N -0.596 5.596 13 C 0.561 3.439 14 O -0.582 6.582 15 C -0.193 4.193 16 C -0.057 4.057 17 C -0.158 4.158 18 C -0.051 4.051 19 C -0.216 4.216 20 C 0.152 3.848 21 O -0.321 6.321 22 C 0.039 3.961 23 C -0.160 4.160 24 C -0.122 4.122 25 C -0.136 4.136 26 C 0.092 3.908 27 C 0.169 3.831 28 H 0.253 0.747 29 H 0.002 0.998 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.141 0.859 34 H 0.163 0.837 35 H 0.168 0.832 36 H 0.157 0.843 37 H 0.125 0.875 38 H 0.064 0.936 39 H 0.090 0.910 40 H 0.113 0.887 41 H 0.081 0.919 42 H 0.092 0.908 43 H 0.068 0.932 44 H 0.077 0.923 45 H 0.101 0.899 46 H -0.010 1.010 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.700 -13.713 -10.660 20.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.239 4.239 3 Si 0.799 3.201 4 H -0.206 1.206 5 H -0.223 1.223 6 H -0.195 1.195 7 C -0.399 4.399 8 H 0.088 0.912 9 N -0.330 5.330 10 C 0.007 3.993 11 C -0.018 4.018 12 N -0.327 5.327 13 C 0.351 3.649 14 O -0.463 6.463 15 C -0.197 4.197 16 C -0.076 4.076 17 C -0.176 4.176 18 C -0.069 4.069 19 C -0.235 4.235 20 C 0.105 3.895 21 O -0.234 6.234 22 C -0.017 4.017 23 C -0.198 4.198 24 C -0.159 4.159 25 C -0.174 4.174 26 C -0.032 4.032 27 C 0.043 3.957 28 H 0.062 0.938 29 H 0.020 0.980 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.159 0.841 34 H 0.181 0.819 35 H 0.186 0.814 36 H 0.175 0.825 37 H 0.142 0.858 38 H 0.083 0.917 39 H 0.109 0.891 40 H 0.131 0.869 41 H 0.100 0.900 42 H 0.111 0.889 43 H 0.087 0.913 44 H 0.095 0.905 45 H 0.119 0.881 46 H 0.008 0.992 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.420 -14.138 -10.226 20.323 hybrid contribution 0.445 1.039 0.652 1.304 sum -9.975 -13.099 -9.575 19.046 Atomic orbital electron populations 1.70192 1.06795 1.26178 1.54735 1.25841 0.95982 1.01586 1.00531 0.85215 0.77956 0.79111 0.77798 1.20634 1.22291 1.19477 1.19548 0.93218 0.85632 1.41507 0.91161 1.44249 1.37753 1.02216 1.48783 1.21345 0.97944 0.86346 0.93660 1.22047 0.88538 1.00275 0.90919 1.48043 1.33495 1.07024 1.44185 1.18573 0.82854 0.83147 0.80289 1.90679 1.67431 1.30242 1.57937 1.19292 0.92883 1.08835 0.98640 1.21340 1.00654 0.94567 0.91040 1.21388 0.92315 1.02499 1.01387 1.21568 0.98681 0.92202 0.94477 1.21496 0.98101 1.07048 0.96814 1.19241 0.93384 0.91211 0.85633 1.86252 1.40588 1.63496 1.33098 1.24685 0.84040 0.94160 0.98767 1.23492 0.99526 0.98288 0.98475 1.22658 0.96695 0.94788 1.01755 1.23199 0.98866 0.98105 0.97185 1.22751 1.00993 0.82492 0.96942 1.21011 0.87931 0.98097 0.88671 0.93838 0.98033 0.90480 0.89961 0.90495 0.84088 0.81924 0.81427 0.82534 0.85779 0.91745 0.89124 0.86897 0.90028 0.88939 0.91277 0.90461 0.88074 0.99235 0.90597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.41 11.27 21.65 0.24 -54.16 16 2 C -0.04 -2.38 4.89 84.86 0.42 -1.97 16 3 Si 0.97 43.82 29.59 68.60 2.03 45.85 16 4 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.30 -13.52 7.11 99.48 0.71 -12.81 16 6 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 7 C -0.27 -14.69 9.57 84.03 0.80 -13.89 16 8 H 0.07 3.72 7.89 -2.91 -0.02 3.69 16 9 N -0.61 -31.14 2.96 -697.36 -2.07 -33.20 16 10 C 0.13 6.03 6.67 86.41 0.58 6.60 16 11 C 0.11 4.23 6.58 86.42 0.57 4.80 16 12 N -0.60 -23.91 2.94 -820.91 -2.41 -26.32 16 13 C 0.56 22.92 6.86 86.70 0.60 23.52 16 14 O -0.58 -27.20 16.15 -0.39 -0.01 -27.20 16 15 C -0.19 -6.52 4.92 -20.01 -0.10 -6.62 16 16 C -0.06 -1.49 7.39 22.52 0.17 -1.32 16 17 C -0.16 -2.97 10.02 22.24 0.22 -2.75 16 18 C -0.05 -0.88 10.03 22.30 0.22 -0.66 16 19 C -0.22 -4.71 9.01 22.34 0.20 -4.51 16 20 C 0.15 4.76 6.68 22.85 0.15 4.91 16 21 O -0.32 -10.90 9.33 -86.06 -0.80 -11.70 16 22 C 0.04 0.89 3.67 31.12 0.11 1.00 16 23 C -0.16 -3.33 7.91 31.12 0.25 -3.09 16 24 C -0.12 -1.88 8.08 31.12 0.25 -1.63 16 25 C -0.14 -2.81 7.91 31.12 0.25 -2.56 16 26 C 0.09 3.51 5.74 86.56 0.50 4.01 16 27 C 0.17 8.26 5.52 86.56 0.48 8.73 16 28 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 29 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 30 H 0.08 3.25 7.93 -2.39 -0.02 3.23 16 31 H 0.08 3.27 7.01 -2.39 -0.02 3.26 16 32 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 33 H 0.14 3.31 7.34 -2.91 -0.02 3.29 16 34 H 0.16 1.95 8.06 -2.91 -0.02 1.92 16 35 H 0.17 1.50 8.06 -2.91 -0.02 1.48 16 36 H 0.16 2.47 5.92 -2.91 -0.02 2.46 16 37 H 0.12 2.10 5.98 -2.38 -0.01 2.09 16 38 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.11 1.12 8.14 -2.39 -0.02 1.11 16 41 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 45 H 0.10 3.41 4.63 -2.39 -0.01 3.40 16 46 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 47 H 0.08 4.01 6.06 -2.39 -0.01 4.00 16 Total: -1.00 -75.04 373.63 3.62 -71.43 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: 0.97 Total: 20.72 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: 5.66 Total: 14.60 kcal Atomic # 7 Polarization: -109.45 SS G_CDS: -4.24 Total: -113.69 kcal Atomic # 8 Polarization: -38.09 SS G_CDS: -0.81 Total: -38.90 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -75.04 3.62 -71.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073100613.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.110 kcal (2) G-P(sol) polarization free energy of solvation -75.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds