Wall clock time and date at job start Sat Apr 11 2020 02:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86799 * 119.99832 * 2 1 4 4 H 1.48500 * 109.47131 * 269.99878 * 3 2 1 5 5 H 1.48494 * 109.47380 * 29.99958 * 3 2 1 6 6 H 1.48500 * 109.47270 * 150.00109 * 3 2 1 7 7 C 1.38952 * 120.00037 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99467 * 160.78487 * 7 2 1 9 9 N 1.37094 * 120.00038 * 340.77997 * 7 2 1 10 10 C 1.34775 * 120.00412 * 317.30754 * 9 7 2 11 11 O 1.21292 * 119.99737 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00244 * 179.97438 * 10 9 7 13 13 H 1.09000 * 109.50390 * 305.08853 * 12 10 9 14 14 C 1.53101 * 109.50475 * 65.21252 * 12 10 9 15 15 N 1.47012 * 109.25549 * 176.78429 * 14 12 10 16 16 C 1.46899 * 110.99857 * 177.60751 * 15 14 12 17 17 C 1.50708 * 109.46889 * 57.59304 * 16 15 14 18 18 C 1.38240 * 119.99674 * 269.72165 * 17 16 15 19 19 C 1.38233 * 119.99939 * 179.81191 * 18 17 16 20 20 C 1.38234 * 119.99731 * 0.39892 * 19 18 17 21 21 C 1.38234 * 120.00517 * 359.85577 * 20 19 18 22 22 C 1.38229 * 120.00213 * 89.99842 * 17 16 15 23 23 C 1.47015 * 110.75378 * 301.38588 * 15 14 12 24 24 C 1.53097 * 109.25890 * 58.61497 * 23 15 14 25 25 O 1.43008 * 109.50520 * 184.99604 * 12 10 9 26 26 C 1.46505 * 119.99603 * 137.30181 * 9 7 2 27 27 C 1.52999 * 117.50052 * 351.98388 * 26 9 7 28 28 C 1.52993 * 117.49984 * 60.64405 * 26 9 7 29 29 H 0.96996 * 120.00079 * 355.21451 * 1 2 3 30 30 H 1.09002 * 109.51023 * 296.71796 * 14 12 10 31 31 H 1.09002 * 109.50506 * 56.85016 * 14 12 10 32 32 H 1.08998 * 109.47286 * 177.58533 * 16 15 14 33 33 H 1.08996 * 109.47362 * 297.59347 * 16 15 14 34 34 H 1.08001 * 119.99743 * 0.02562 * 18 17 16 35 35 H 1.07993 * 119.99975 * 180.23478 * 19 18 17 36 36 H 1.08001 * 119.99898 * 179.83675 * 20 19 18 37 37 H 1.07997 * 120.00628 * 179.97438 * 21 20 19 38 38 H 1.07996 * 120.00293 * 359.97438 * 22 17 16 39 39 H 1.09002 * 109.50341 * 298.68240 * 23 15 14 40 40 H 1.08999 * 109.54085 * 178.57258 * 23 15 14 41 41 H 1.08995 * 109.50505 * 183.21386 * 24 23 15 42 42 H 1.09001 * 109.50267 * 63.08550 * 24 23 15 43 43 H 1.09004 * 115.54632 * 206.31330 * 26 9 7 44 44 H 1.09000 * 117.49794 * 215.00623 * 27 26 9 45 45 H 1.08995 * 117.50077 * 0.02562 * 27 26 9 46 46 H 1.09000 * 117.49967 * 359.97438 * 28 26 9 47 47 H 1.09002 * 117.50108 * 144.97569 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4403 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 3.0438 -1.2292 -0.3084 9 7 1.3807 -2.3577 0.3898 10 6 0.5754 -2.3545 1.4704 11 8 0.4066 -1.3303 2.0979 12 6 -0.1156 -3.6233 1.8991 13 1 -0.6873 -4.0266 1.0633 14 6 0.9298 -4.6485 2.3466 15 7 0.2471 -5.8551 2.8359 16 6 1.2170 -6.8882 3.2231 17 6 2.1431 -6.3379 4.2771 18 6 3.3173 -5.7100 3.9057 19 6 4.1649 -5.2018 4.8722 20 6 3.8423 -5.3288 6.2104 21 6 2.6706 -5.9613 6.5820 22 6 1.8211 -6.4660 5.6152 23 6 -0.6500 -5.5289 3.9540 24 6 -1.6794 -4.4948 3.4904 25 8 -0.9973 -3.3420 2.9893 26 6 1.5849 -3.5949 -0.3679 27 6 2.3548 -3.4969 -1.6865 28 6 3.0120 -4.1384 -0.4619 29 1 -0.4850 0.8371 0.0701 30 1 1.5689 -4.9088 1.5028 31 1 1.5367 -4.2241 3.1464 32 1 0.6868 -7.7533 3.6213 33 1 1.7970 -7.1875 2.3502 34 1 3.5708 -5.6135 2.8603 35 1 5.0804 -4.7080 4.5820 36 1 4.5058 -4.9341 6.9656 37 1 2.4188 -6.0608 7.6274 38 1 0.9057 -6.9601 5.9055 39 1 -0.0683 -5.1185 4.7795 40 1 -1.1640 -6.4315 4.2843 41 1 -2.3107 -4.2075 4.3312 42 1 -2.2965 -4.9243 2.7011 43 1 0.7729 -4.3199 -0.3119 44 1 2.0492 -4.1574 -2.4979 45 1 2.7097 -2.5121 -1.9901 46 1 3.7991 -3.5753 0.0396 47 1 3.1389 -5.2209 -0.4674 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078097917.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:34:52 Heat of formation + Delta-G solvation = 7.486815 kcal Electronic energy + Delta-G solvation = -29998.215348 eV Core-core repulsion = 26147.968230 eV Total energy + Delta-G solvation = -3850.247119 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.23070 -38.99792 -37.90364 -36.13695 -35.39101 -32.76968 -31.60174 -31.38072 -30.93954 -30.31120 -27.92918 -25.53905 -24.11773 -23.98456 -22.42503 -21.76359 -21.57867 -21.14760 -20.07500 -19.34745 -16.99296 -16.73709 -16.09768 -15.89991 -15.84138 -15.35115 -15.20563 -14.76463 -14.57303 -14.42259 -14.22826 -14.00971 -13.61549 -13.48148 -13.36810 -12.83307 -12.65946 -12.50519 -12.41223 -11.91029 -11.84211 -11.39057 -11.33047 -11.09927 -11.03298 -10.96199 -10.87367 -10.80471 -10.55380 -10.36930 -10.16194 -9.95187 -9.76336 -9.21827 -8.91397 -8.81200 -8.66613 -8.30496 -7.92328 -7.03973 -6.06507 -3.85733 1.29175 1.37801 3.32360 3.42567 3.44709 3.67400 3.91413 3.98195 4.17013 4.40217 4.70640 4.73072 4.79192 4.95153 4.96399 5.05740 5.09448 5.19423 5.23442 5.34416 5.42639 5.45508 5.49520 5.56019 5.61569 5.64325 5.66312 5.72569 5.78054 5.90888 5.93096 5.96388 6.00047 6.01557 6.15531 6.18559 6.35620 6.40663 6.44462 6.48851 6.53627 6.71010 6.93049 6.96901 7.00089 7.01815 7.56368 7.66477 8.28964 9.05351 9.19105 9.65507 10.29000 11.00144 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.012687 B = 0.004378 C = 0.004191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.516560 B = 6394.405893 C = 6678.677051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.072 3.928 3 Si 0.907 3.093 4 H -0.282 1.282 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.346 4.346 8 H 0.079 0.921 9 N -0.423 5.423 10 C 0.491 3.509 11 O -0.510 6.510 12 C 0.084 3.916 13 H 0.071 0.929 14 C 0.025 3.975 15 N -0.524 5.524 16 C 0.093 3.907 17 C -0.122 4.122 18 C -0.102 4.102 19 C -0.118 4.118 20 C -0.120 4.120 21 C -0.124 4.124 22 C -0.111 4.111 23 C 0.012 3.988 24 C 0.061 3.939 25 O -0.352 6.352 26 C 0.071 3.929 27 C -0.173 4.173 28 C -0.209 4.209 29 H 0.265 0.735 30 H 0.098 0.902 31 H 0.052 0.948 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.049 0.951 40 H 0.080 0.920 41 H 0.094 0.906 42 H 0.055 0.945 43 H 0.105 0.895 44 H 0.084 0.916 45 H 0.108 0.892 46 H 0.092 0.908 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.242 -16.392 7.032 18.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.138 4.138 3 Si 0.734 3.266 4 H -0.209 1.209 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.472 4.472 8 H 0.097 0.903 9 N -0.146 5.146 10 C 0.276 3.724 11 O -0.384 6.384 12 C 0.022 3.978 13 H 0.088 0.912 14 C -0.103 4.103 15 N -0.247 5.247 16 C -0.035 4.035 17 C -0.124 4.124 18 C -0.121 4.121 19 C -0.136 4.136 20 C -0.139 4.139 21 C -0.142 4.142 22 C -0.130 4.130 23 C -0.116 4.116 24 C -0.017 4.017 25 O -0.270 6.270 26 C -0.035 4.035 27 C -0.211 4.211 28 C -0.248 4.248 29 H 0.075 0.925 30 H 0.116 0.884 31 H 0.071 0.929 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.067 0.933 40 H 0.099 0.901 41 H 0.112 0.888 42 H 0.073 0.927 43 H 0.123 0.877 44 H 0.102 0.898 45 H 0.126 0.874 46 H 0.110 0.890 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.605 -15.696 6.995 17.381 hybrid contribution 0.849 0.784 0.581 1.294 sum 3.454 -14.912 7.576 17.079 Atomic orbital electron populations 1.69881 1.06518 1.27864 1.41785 1.25183 0.94725 0.99335 0.94605 0.86316 0.79907 0.82838 0.77584 1.20852 1.20943 1.19711 1.18816 0.94557 0.84357 1.49482 0.90326 1.42653 1.43857 1.06324 1.21743 1.19251 0.83372 0.87981 0.81792 1.90548 1.61125 1.33025 1.53741 1.22062 0.90993 0.95142 0.89581 0.91176 1.22922 0.96538 0.89564 1.01255 1.62692 1.18790 1.10371 1.32814 1.21274 0.91967 0.94435 0.95827 1.20653 0.96269 1.00083 0.95371 1.21150 0.93828 0.97346 0.99756 1.21187 0.99869 0.99409 0.93099 1.21151 0.97220 0.99278 0.96224 1.21110 0.94898 0.98942 0.99225 1.21023 0.99238 1.00235 0.92474 1.22884 0.95916 0.99513 0.93303 1.22642 0.93609 0.86554 0.98893 1.88175 1.58553 1.30292 1.49952 1.21792 0.93075 0.91362 0.97279 1.23096 1.04370 1.02679 0.90955 1.23342 0.98509 0.99015 1.03921 0.92473 0.88434 0.92929 0.89916 0.89586 0.85888 0.86006 0.86292 0.86318 0.86413 0.93303 0.90147 0.88758 0.92710 0.87728 0.89775 0.87409 0.88994 0.89804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -25.06 11.66 55.50 0.65 -24.41 16 2 C 0.07 2.06 4.35 -17.47 -0.08 1.99 16 3 Si 0.91 22.15 29.60 -169.99 -5.03 17.12 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 7 C -0.35 -9.41 7.83 -14.93 -0.12 -9.52 16 8 H 0.08 2.05 7.41 -52.48 -0.39 1.66 16 9 N -0.42 -10.55 2.86 -107.73 -0.31 -10.86 16 10 C 0.49 12.93 6.40 -10.98 -0.07 12.86 16 11 O -0.51 -15.89 14.15 -14.28 -0.20 -16.09 16 12 C 0.08 1.78 2.41 -27.83 -0.07 1.71 16 13 H 0.07 1.44 7.30 -51.93 -0.38 1.06 16 14 C 0.03 0.43 3.83 -3.71 -0.01 0.42 16 15 N -0.52 -7.27 4.94 -235.75 -1.16 -8.44 16 16 C 0.09 1.05 5.58 -4.97 -0.03 1.02 16 17 C -0.12 -1.49 4.01 -104.62 -0.42 -1.91 16 18 C -0.10 -1.32 7.95 -39.58 -0.31 -1.63 16 19 C -0.12 -1.46 10.05 -39.58 -0.40 -1.86 16 20 C -0.12 -1.39 10.05 -39.58 -0.40 -1.79 16 21 C -0.12 -1.38 10.05 -39.58 -0.40 -1.78 16 22 C -0.11 -1.27 8.03 -39.58 -0.32 -1.59 16 23 C 0.01 0.16 5.13 -3.71 -0.02 0.14 16 24 C 0.06 0.94 7.01 37.21 0.26 1.20 16 25 O -0.35 -7.63 10.01 -55.06 -0.55 -8.18 16 26 C 0.07 1.39 4.41 -67.93 -0.30 1.09 16 27 C -0.17 -3.04 9.81 -26.70 -0.26 -3.31 16 28 C -0.21 -3.39 9.56 -26.70 -0.26 -3.64 16 29 H 0.27 7.76 8.31 -40.82 -0.34 7.42 16 30 H 0.10 1.58 5.14 -51.93 -0.27 1.31 16 31 H 0.05 1.02 6.23 -51.93 -0.32 0.69 16 32 H 0.08 0.78 8.05 -51.93 -0.42 0.36 16 33 H 0.09 0.90 8.08 -51.93 -0.42 0.48 16 34 H 0.12 1.52 8.03 -52.49 -0.42 1.10 16 35 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 36 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 37 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 38 H 0.12 1.13 8.03 -52.49 -0.42 0.71 16 39 H 0.05 0.72 6.33 -51.93 -0.33 0.39 16 40 H 0.08 0.84 8.12 -51.93 -0.42 0.42 16 41 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 42 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.11 1.88 6.28 -51.93 -0.33 1.55 16 44 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 45 H 0.11 2.12 6.83 -51.93 -0.35 1.76 16 46 H 0.09 1.61 8.14 -51.93 -0.42 1.18 16 47 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 370.01 15.07 5.58 5.58 Total: -1.00 -34.63 370.01 -11.21 -45.84 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -6.99 Total: 6.05 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: -3.19 Total: -6.62 kcal Atomic # 7 Polarization: -42.88 SS G_CDS: -0.82 Total: -43.71 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -0.75 Total: -24.27 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.03 Total: 17.12 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.63 -11.21 -45.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078097917.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.331 kcal (2) G-P(sol) polarization free energy of solvation -34.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds