Wall clock time and date at job start Sat Apr 11 2020 02:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00287 * 2 1 4 4 H 1.48501 * 109.47070 * 269.99964 * 3 2 1 5 5 H 1.48500 * 109.47034 * 29.99990 * 3 2 1 6 6 H 1.48505 * 109.47700 * 150.00126 * 3 2 1 7 7 C 1.38815 * 119.99879 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99816 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00189 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00201 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47202 * 180.02562 * 10 9 7 12 12 C 1.53779 * 113.61473 * 185.00272 * 11 10 9 13 13 C 1.53781 * 87.08242 * 220.02098 * 12 11 10 14 14 N 1.46502 * 113.61407 * 139.97802 * 13 12 11 15 15 C 1.34777 * 119.99890 * 156.52823 * 14 13 12 16 16 O 1.21282 * 119.99939 * 5.08427 * 15 14 13 17 17 C 1.50701 * 120.00393 * 185.07785 * 15 14 13 18 18 H 1.08994 * 109.40235 * 335.71769 * 17 15 14 19 19 C 1.53069 * 109.44024 * 215.81616 * 17 15 14 20 20 C 1.53409 * 108.28545 * 191.68102 * 19 17 15 21 21 O 1.42828 * 108.39671 * 64.69960 * 20 19 17 22 22 C 1.35840 * 117.87005 * 310.87725 * 21 20 19 23 23 C 1.39153 * 118.50190 * 197.12449 * 22 21 20 24 24 C 1.37962 * 120.21287 * 180.25815 * 23 22 21 25 25 C 1.38292 * 119.96307 * 359.97438 * 24 23 22 26 26 C 1.38096 * 119.98022 * 359.91298 * 25 24 23 27 27 C 1.38365 * 121.80519 * 17.18818 * 22 21 20 28 28 C 1.53781 * 87.17084 * 25.39177 * 13 12 11 29 29 H 0.97004 * 119.99749 * 359.97438 * 1 2 3 30 30 H 0.96997 * 119.99880 * 0.02562 * 9 7 2 31 31 H 1.09005 * 109.46860 * 60.00416 * 10 9 7 32 32 H 1.08999 * 109.47750 * 300.00748 * 10 9 7 33 33 H 1.08993 * 112.85169 * 316.20291 * 11 10 9 34 34 H 1.08996 * 113.61669 * 105.47678 * 12 11 10 35 35 H 1.08996 * 113.61629 * 334.56797 * 12 11 10 36 36 H 1.09000 * 113.61790 * 270.80041 * 13 12 11 37 37 H 0.96995 * 120.00360 * 336.53839 * 14 13 12 38 38 H 1.09003 * 109.70240 * 311.37525 * 19 17 15 39 39 H 1.08996 * 109.70110 * 71.94068 * 19 17 15 40 40 H 1.09001 * 109.68073 * 304.96810 * 20 19 17 41 41 H 1.09010 * 109.67660 * 184.42503 * 20 19 17 42 42 H 1.07998 * 119.88956 * 0.22993 * 23 22 21 43 43 H 1.08005 * 120.01974 * 180.02562 * 24 23 22 44 44 H 1.07999 * 120.00975 * 179.89360 * 25 24 23 45 45 H 1.08007 * 119.84246 * 180.02562 * 26 25 24 46 46 H 1.09002 * 113.61714 * 89.15950 * 28 13 12 47 47 H 1.09005 * 113.61514 * 220.05632 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5479 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0016 10 6 2.0580 -3.6568 0.0016 11 6 1.0638 -4.8197 0.0022 12 6 1.7304 -6.2000 0.1252 13 6 0.7045 -6.7001 -0.9055 14 7 1.2667 -7.6268 -1.8911 15 6 0.4620 -8.4951 -2.5353 16 8 -0.7383 -8.4479 -2.3683 17 6 1.0537 -9.5247 -3.4633 18 1 2.0201 -9.1734 -3.8248 19 6 0.1129 -9.7402 -4.6513 20 6 0.5817 -10.9841 -5.4170 21 8 0.4313 -12.1209 -4.5654 22 6 0.9266 -12.0386 -3.3032 23 6 1.1201 -13.2164 -2.5878 24 6 1.6162 -13.1736 -1.3012 25 6 1.9232 -11.9572 -0.7194 26 6 1.7346 -10.7865 -1.4273 27 6 1.2379 -10.8233 -2.7197 28 6 0.6139 -5.2489 -1.4062 29 1 -0.4850 0.8401 0.0004 30 1 0.3556 -2.3881 0.0016 31 1 2.6853 -3.7141 0.8912 32 1 2.6841 -3.7150 -0.8887 33 1 0.2380 -4.6702 0.6977 34 1 1.6167 -6.6537 1.1097 35 1 2.7585 -6.2221 -0.2361 36 1 -0.2200 -7.0665 -0.4592 37 1 2.2180 -7.6156 -2.0800 38 1 -0.9047 -9.8921 -4.2915 39 1 0.1446 -8.8705 -5.3076 40 1 1.6293 -10.8704 -5.6960 41 1 -0.0253 -11.1139 -6.3132 42 1 0.8807 -14.1670 -3.0411 43 1 1.7656 -14.0897 -0.7489 44 1 2.3100 -11.9227 0.2884 45 1 1.9755 -9.8377 -0.9709 46 1 1.3362 -5.0104 -2.1869 47 1 -0.3998 -4.9356 -1.6562 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755217708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:34:26 Heat of formation + Delta-G solvation = -22.841362 kcal Electronic energy + Delta-G solvation = -27516.188447 eV Core-core repulsion = 23664.626199 eV Total energy + Delta-G solvation = -3851.562247 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.41277 -39.91884 -38.37805 -37.83892 -34.59619 -34.56161 -33.25154 -31.05646 -30.80511 -30.56427 -27.39940 -26.29818 -25.53743 -24.21306 -23.47097 -22.87578 -21.69218 -20.73504 -20.22404 -19.36419 -18.29915 -17.25152 -17.11427 -16.98984 -16.47901 -16.15861 -15.35832 -15.20320 -14.88312 -14.63464 -14.44900 -14.17784 -14.09766 -13.67988 -13.61471 -13.29678 -13.15808 -13.02564 -12.77183 -12.32397 -12.27491 -11.88418 -11.83615 -11.64583 -11.43389 -11.24622 -11.16323 -11.00073 -10.86147 -10.73936 -10.36396 -10.14116 -10.02320 -9.83690 -9.63048 -9.14121 -9.04952 -8.84817 -8.50352 -6.90226 -5.75324 -3.03858 0.91854 1.08844 2.41303 2.86624 3.01720 3.43569 3.43727 3.48408 3.50461 4.09716 4.21876 4.30466 4.48027 4.58174 4.63714 4.71722 4.74456 4.77692 4.80702 4.87926 5.00897 5.05869 5.09624 5.11558 5.14002 5.19271 5.47727 5.58113 5.62290 5.69979 5.74368 5.80383 5.89174 5.92521 6.02935 6.06325 6.08231 6.19181 6.22727 6.27165 6.41206 6.41976 6.59104 6.77438 6.90954 7.07227 7.35495 7.70014 8.05440 8.43702 9.54592 10.13843 10.48216 11.47564 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.025479 B = 0.002041 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.683735 B =13715.611217 C =14331.391341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.240 4.240 8 H 0.069 0.931 9 N -0.732 5.732 10 C 0.166 3.834 11 C -0.111 4.111 12 C -0.137 4.137 13 C 0.118 3.882 14 N -0.717 5.717 15 C 0.525 3.475 16 O -0.530 6.530 17 C -0.063 4.063 18 H 0.101 0.899 19 C -0.149 4.149 20 C 0.064 3.936 21 O -0.315 6.315 22 C 0.142 3.858 23 C -0.151 4.151 24 C -0.084 4.084 25 C -0.150 4.150 26 C -0.081 4.081 27 C -0.150 4.150 28 C -0.138 4.138 29 H 0.255 0.745 30 H 0.384 0.616 31 H 0.019 0.981 32 H 0.018 0.982 33 H 0.093 0.907 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.111 0.889 37 H 0.400 0.600 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.066 0.934 41 H 0.113 0.887 42 H 0.131 0.869 43 H 0.129 0.871 44 H 0.126 0.874 45 H 0.126 0.874 46 H 0.083 0.917 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.046 -28.888 -7.708 30.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.371 4.371 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.038 3.962 11 C -0.130 4.130 12 C -0.176 4.176 13 C 0.014 3.986 14 N -0.367 5.367 15 C 0.310 3.690 16 O -0.406 6.406 17 C -0.085 4.085 18 H 0.119 0.881 19 C -0.187 4.187 20 C -0.011 4.011 21 O -0.229 6.229 22 C 0.097 3.903 23 C -0.169 4.169 24 C -0.102 4.102 25 C -0.168 4.168 26 C -0.100 4.100 27 C -0.151 4.151 28 C -0.177 4.177 29 H 0.065 0.935 30 H 0.218 0.782 31 H 0.036 0.964 32 H 0.036 0.964 33 H 0.111 0.889 34 H 0.090 0.910 35 H 0.103 0.897 36 H 0.129 0.871 37 H 0.234 0.766 38 H 0.114 0.886 39 H 0.109 0.891 40 H 0.085 0.915 41 H 0.131 0.869 42 H 0.149 0.851 43 H 0.147 0.853 44 H 0.144 0.856 45 H 0.144 0.856 46 H 0.102 0.898 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.202 -28.887 -7.659 30.180 hybrid contribution 0.720 1.347 -0.067 1.529 sum 4.922 -27.540 -7.726 29.024 Atomic orbital electron populations 1.69665 1.05102 1.25619 1.57778 1.24755 0.95539 0.97713 1.03127 0.86187 0.78628 0.83871 0.77488 1.21759 1.21766 1.20789 1.19230 0.90990 0.84257 1.42606 0.91263 1.42356 1.05909 0.99965 1.89383 1.20592 0.92857 0.85165 0.97567 1.22566 0.99458 0.93845 0.97118 1.23334 0.98647 0.96806 0.98778 1.22697 0.98179 0.88388 0.89371 1.46170 1.11289 1.37152 1.42126 1.20215 0.87114 0.81022 0.80651 1.90715 1.14746 1.71658 1.63472 1.20158 1.00813 0.92214 0.95285 0.88122 1.22188 1.00992 0.99281 0.96197 1.23010 1.01900 0.83862 0.92325 1.85994 1.75411 1.40401 1.21106 1.18637 0.94117 0.92858 0.84714 1.20602 1.04388 0.96533 0.95402 1.20976 0.96969 0.98222 0.94011 1.21033 1.03077 0.92238 1.00474 1.21026 0.96943 0.99105 0.92879 1.19328 1.06906 0.92456 0.96447 1.23466 1.02545 0.93930 0.97709 0.93522 0.78242 0.96354 0.96428 0.88856 0.90952 0.89652 0.87096 0.76550 0.88635 0.89124 0.91527 0.86914 0.85074 0.85260 0.85615 0.85585 0.89805 0.91110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.56 13.06 55.49 0.72 -27.83 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 4 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 8 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 9 N -0.73 -18.68 5.60 -59.91 -0.34 -19.01 16 10 C 0.17 3.27 6.10 -4.04 -0.02 3.24 16 11 C -0.11 -1.72 3.75 -89.72 -0.34 -2.06 16 12 C -0.14 -1.58 7.39 -25.92 -0.19 -1.77 16 13 C 0.12 1.44 4.18 -67.12 -0.28 1.16 16 14 N -0.72 -7.30 4.65 -53.01 -0.25 -7.54 16 15 C 0.52 6.22 5.79 -10.98 -0.06 6.15 16 16 O -0.53 -8.58 15.73 5.56 0.09 -8.49 16 17 C -0.06 -0.58 2.71 -92.85 -0.25 -0.83 16 18 H 0.10 0.66 8.08 -51.93 -0.42 0.24 16 19 C -0.15 -1.27 5.35 -26.48 -0.14 -1.41 16 20 C 0.06 0.44 7.03 37.37 0.26 0.71 16 21 O -0.32 -3.10 10.27 -19.24 -0.20 -3.30 16 22 C 0.14 1.45 6.47 -39.20 -0.25 1.20 16 23 C -0.15 -1.34 9.94 -39.34 -0.39 -1.73 16 24 C -0.08 -0.65 10.04 -39.66 -0.40 -1.05 16 25 C -0.15 -1.25 10.04 -39.61 -0.40 -1.65 16 26 C -0.08 -0.77 9.10 -39.53 -0.36 -1.13 16 27 C -0.15 -1.50 5.43 -104.44 -0.57 -2.07 16 28 C -0.14 -2.02 7.44 -25.83 -0.19 -2.21 16 29 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 30 H 0.38 10.35 7.67 -40.82 -0.31 10.04 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.02 0.35 7.85 -51.93 -0.41 -0.06 16 33 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.08 0.87 8.07 -51.93 -0.42 0.45 16 36 H 0.11 1.52 7.57 -51.93 -0.39 1.13 16 37 H 0.40 2.98 8.67 -40.82 -0.35 2.62 16 38 H 0.10 1.05 7.47 -51.93 -0.39 0.66 16 39 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.11 0.54 8.14 -51.92 -0.42 0.12 16 42 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 43 H 0.13 0.68 8.06 -52.48 -0.42 0.25 16 44 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 45 H 0.13 1.09 6.80 -52.48 -0.36 0.73 16 46 H 0.08 1.23 7.90 -51.93 -0.41 0.82 16 47 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 383.81 15.07 5.78 5.78 Total: -1.00 -34.66 383.81 -10.28 -44.93 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -7.23 Total: 8.85 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: -3.83 Total: -10.91 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: 0.14 Total: -54.38 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: -0.11 Total: -11.79 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.66 -10.28 -44.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755217708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.090 kcal (2) G-P(sol) polarization free energy of solvation -34.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds