Wall clock time and date at job start Sat Apr 11 2020 02:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00287 * 2 1 4 4 H 1.48501 * 109.47070 * 269.99964 * 3 2 1 5 5 H 1.48500 * 109.47034 * 29.99990 * 3 2 1 6 6 H 1.48505 * 109.47700 * 150.00126 * 3 2 1 7 7 C 1.38815 * 119.99879 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99816 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00189 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00201 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47202 * 180.02562 * 10 9 7 12 12 C 1.53779 * 113.61473 * 185.00272 * 11 10 9 13 13 C 1.53781 * 87.08242 * 220.02098 * 12 11 10 14 14 N 1.46502 * 113.61407 * 139.97802 * 13 12 11 15 15 C 1.34777 * 119.99890 * 156.52823 * 14 13 12 16 16 O 1.21282 * 119.99939 * 5.08427 * 15 14 13 17 17 C 1.50701 * 120.00393 * 185.07785 * 15 14 13 18 18 H 1.08994 * 109.40235 * 335.71769 * 17 15 14 19 19 C 1.53069 * 109.44024 * 215.81616 * 17 15 14 20 20 C 1.53409 * 108.28545 * 191.68102 * 19 17 15 21 21 O 1.42828 * 108.39671 * 64.69960 * 20 19 17 22 22 C 1.35840 * 117.87005 * 310.87725 * 21 20 19 23 23 C 1.39153 * 118.50190 * 197.12449 * 22 21 20 24 24 C 1.37962 * 120.21287 * 180.25815 * 23 22 21 25 25 C 1.38292 * 119.96307 * 359.97438 * 24 23 22 26 26 C 1.38096 * 119.98022 * 359.91298 * 25 24 23 27 27 C 1.38365 * 121.80519 * 17.18818 * 22 21 20 28 28 C 1.53781 * 87.17084 * 25.39177 * 13 12 11 29 29 H 0.97004 * 119.99749 * 359.97438 * 1 2 3 30 30 H 0.96997 * 119.99880 * 0.02562 * 9 7 2 31 31 H 1.09005 * 109.46860 * 60.00416 * 10 9 7 32 32 H 1.08999 * 109.47750 * 300.00748 * 10 9 7 33 33 H 1.08993 * 112.85169 * 316.20291 * 11 10 9 34 34 H 1.08996 * 113.61669 * 105.47678 * 12 11 10 35 35 H 1.08996 * 113.61629 * 334.56797 * 12 11 10 36 36 H 1.09000 * 113.61790 * 270.80041 * 13 12 11 37 37 H 0.96995 * 120.00360 * 336.53839 * 14 13 12 38 38 H 1.09003 * 109.70240 * 311.37525 * 19 17 15 39 39 H 1.08996 * 109.70110 * 71.94068 * 19 17 15 40 40 H 1.09001 * 109.68073 * 304.96810 * 20 19 17 41 41 H 1.09010 * 109.67660 * 184.42503 * 20 19 17 42 42 H 1.07998 * 119.88956 * 0.22993 * 23 22 21 43 43 H 1.08005 * 120.01974 * 180.02562 * 24 23 22 44 44 H 1.07999 * 120.00975 * 179.89360 * 25 24 23 45 45 H 1.08007 * 119.84246 * 180.02562 * 26 25 24 46 46 H 1.09002 * 113.61714 * 89.15950 * 28 13 12 47 47 H 1.09005 * 113.61514 * 220.05632 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5479 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0016 10 6 2.0580 -3.6568 0.0016 11 6 1.0638 -4.8197 0.0022 12 6 1.7304 -6.2000 0.1252 13 6 0.7045 -6.7001 -0.9055 14 7 1.2667 -7.6268 -1.8911 15 6 0.4620 -8.4951 -2.5353 16 8 -0.7383 -8.4479 -2.3683 17 6 1.0537 -9.5247 -3.4633 18 1 2.0201 -9.1734 -3.8248 19 6 0.1129 -9.7402 -4.6513 20 6 0.5817 -10.9841 -5.4170 21 8 0.4313 -12.1209 -4.5654 22 6 0.9266 -12.0386 -3.3032 23 6 1.1201 -13.2164 -2.5878 24 6 1.6162 -13.1736 -1.3012 25 6 1.9232 -11.9572 -0.7194 26 6 1.7346 -10.7865 -1.4273 27 6 1.2379 -10.8233 -2.7197 28 6 0.6139 -5.2489 -1.4062 29 1 -0.4850 0.8401 0.0004 30 1 0.3556 -2.3881 0.0016 31 1 2.6853 -3.7141 0.8912 32 1 2.6841 -3.7150 -0.8887 33 1 0.2380 -4.6702 0.6977 34 1 1.6167 -6.6537 1.1097 35 1 2.7585 -6.2221 -0.2361 36 1 -0.2200 -7.0665 -0.4592 37 1 2.2180 -7.6156 -2.0800 38 1 -0.9047 -9.8921 -4.2915 39 1 0.1446 -8.8705 -5.3076 40 1 1.6293 -10.8704 -5.6960 41 1 -0.0253 -11.1139 -6.3132 42 1 0.8807 -14.1670 -3.0411 43 1 1.7656 -14.0897 -0.7489 44 1 2.3100 -11.9227 0.2884 45 1 1.9755 -9.8377 -0.9709 46 1 1.3362 -5.0104 -2.1869 47 1 -0.3998 -4.9356 -1.6562 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755217708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:34:25 Heat of formation + Delta-G solvation = -45.277872 kcal Electronic energy + Delta-G solvation = -27517.161367 eV Core-core repulsion = 23664.626199 eV Total energy + Delta-G solvation = -3852.535167 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.14395 -40.88047 -39.47829 -38.45615 -36.35496 -35.34483 -34.50067 -32.78894 -31.61396 -31.19953 -28.72607 -27.39985 -26.64633 -25.25892 -24.72100 -23.77157 -22.89048 -21.75291 -21.06076 -20.45556 -19.12920 -18.93589 -18.04367 -17.74972 -17.32410 -17.10274 -16.63447 -16.24318 -15.95466 -15.77223 -15.48407 -15.17937 -15.06026 -14.85574 -14.76347 -14.54654 -14.27730 -14.21080 -13.42553 -13.37446 -13.24878 -13.04556 -12.93198 -12.91865 -12.73239 -12.50764 -12.21493 -12.10434 -12.06454 -11.87132 -11.83987 -11.64659 -11.39988 -11.31908 -10.93100 -10.82645 -10.05160 -9.80355 -9.15681 -8.98655 -7.95118 -5.23931 0.27472 0.43500 1.46649 1.48748 1.48860 1.57314 2.07930 2.35838 2.56076 2.78048 3.37729 3.40790 3.52475 3.55788 3.62456 3.67637 3.82922 3.88047 3.92409 4.08987 4.11875 4.20528 4.30174 4.34504 4.49328 4.51161 4.52780 4.56982 4.64455 4.65239 4.80227 4.88550 4.89359 4.95586 4.99067 5.01677 5.05568 5.13279 5.23302 5.29868 5.41036 5.43090 5.49644 5.56719 5.62972 5.83190 6.27310 6.44073 6.50559 7.17871 7.32909 8.11305 8.32889 9.28670 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.025479 B = 0.002041 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.683735 B =13715.611217 C =14331.391341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.081 4.081 3 Si 0.976 3.024 4 H -0.287 1.287 5 H -0.296 1.296 6 H -0.267 1.267 7 C -0.244 4.244 8 H 0.078 0.922 9 N -0.748 5.748 10 C 0.165 3.835 11 C -0.115 4.115 12 C -0.111 4.111 13 C 0.130 3.870 14 N -0.702 5.702 15 C 0.525 3.475 16 O -0.580 6.580 17 C -0.059 4.059 18 H 0.131 0.869 19 C -0.148 4.148 20 C 0.063 3.937 21 O -0.331 6.331 22 C 0.122 3.878 23 C -0.163 4.163 24 C -0.083 4.083 25 C -0.156 4.156 26 C -0.095 4.095 27 C -0.165 4.165 28 C -0.140 4.140 29 H 0.250 0.750 30 H 0.372 0.628 31 H 0.023 0.977 32 H 0.025 0.975 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.109 0.891 36 H 0.095 0.905 37 H 0.417 0.583 38 H 0.063 0.937 39 H 0.104 0.896 40 H 0.086 0.914 41 H 0.133 0.867 42 H 0.142 0.858 43 H 0.156 0.844 44 H 0.145 0.855 45 H 0.132 0.868 46 H 0.086 0.914 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.660 -30.253 -7.865 32.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.273 4.273 3 Si 0.804 3.196 4 H -0.214 1.214 5 H -0.223 1.223 6 H -0.192 1.192 7 C -0.376 4.376 8 H 0.096 0.904 9 N -0.390 5.390 10 C 0.038 3.962 11 C -0.134 4.134 12 C -0.150 4.150 13 C 0.025 3.975 14 N -0.353 5.353 15 C 0.312 3.688 16 O -0.459 6.459 17 C -0.080 4.080 18 H 0.149 0.851 19 C -0.186 4.186 20 C -0.011 4.011 21 O -0.246 6.246 22 C 0.077 3.923 23 C -0.181 4.181 24 C -0.101 4.101 25 C -0.174 4.174 26 C -0.113 4.113 27 C -0.166 4.166 28 C -0.179 4.179 29 H 0.059 0.941 30 H 0.203 0.797 31 H 0.041 0.959 32 H 0.043 0.957 33 H 0.097 0.903 34 H 0.108 0.892 35 H 0.127 0.873 36 H 0.113 0.887 37 H 0.255 0.745 38 H 0.082 0.918 39 H 0.123 0.877 40 H 0.105 0.895 41 H 0.150 0.850 42 H 0.160 0.840 43 H 0.174 0.826 44 H 0.163 0.837 45 H 0.149 0.851 46 H 0.105 0.895 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.897 -30.289 -7.822 32.034 hybrid contribution -0.090 1.703 -0.019 1.706 sum 6.807 -28.586 -7.840 30.413 Atomic orbital electron populations 1.69834 1.06734 1.26032 1.59684 1.25630 0.96433 1.01332 1.03891 0.85106 0.77723 0.79294 0.77438 1.21391 1.22316 1.19185 1.19677 0.91572 0.85420 1.40929 0.90434 1.42629 1.05627 1.01433 1.89325 1.20785 0.93487 0.84172 0.97712 1.22472 0.98823 0.94614 0.97500 1.23226 0.99183 0.93067 0.99503 1.22349 0.98200 0.87251 0.89693 1.46003 1.12068 1.36069 1.41158 1.20726 0.86487 0.81175 0.80411 1.90699 1.17027 1.73022 1.65148 1.20204 1.02031 0.91113 0.94626 0.85086 1.22171 0.99186 1.00807 0.96462 1.23231 1.03490 0.82262 0.92151 1.85966 1.75671 1.41627 1.21302 1.18907 0.94717 0.93466 0.85176 1.20902 1.04476 0.96763 0.95984 1.21323 0.95835 0.99233 0.93682 1.21349 1.02664 0.92105 1.01303 1.21212 0.97327 0.99872 0.92890 1.19463 1.07524 0.92634 0.97009 1.23469 1.01158 0.95919 0.97370 0.94083 0.79689 0.95901 0.95681 0.90275 0.89211 0.87258 0.88675 0.74487 0.91824 0.87721 0.89543 0.84952 0.84012 0.82639 0.83709 0.85060 0.89500 0.93567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.68 13.06 21.65 0.28 -60.39 16 2 C -0.08 -4.72 5.50 84.86 0.47 -4.25 16 3 Si 0.98 46.43 29.55 68.60 2.03 48.45 16 4 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 5 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.24 -13.74 9.99 84.03 0.84 -12.90 16 8 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 9 N -0.75 -38.44 5.60 -343.45 -1.92 -40.36 16 10 C 0.16 6.33 6.10 86.38 0.53 6.85 16 11 C -0.11 -3.49 3.75 -10.21 -0.04 -3.53 16 12 C -0.11 -2.28 7.39 31.12 0.23 -2.05 16 13 C 0.13 3.04 4.18 45.52 0.19 3.23 16 14 N -0.70 -13.07 4.65 -440.03 -2.05 -15.11 16 15 C 0.52 12.09 5.79 87.66 0.51 12.60 16 16 O -0.58 -19.23 15.73 -3.03 -0.05 -19.28 16 17 C -0.06 -0.99 2.71 -12.24 -0.03 -1.03 16 18 H 0.13 1.36 8.08 -2.39 -0.02 1.34 16 19 C -0.15 -2.44 5.35 30.75 0.16 -2.27 16 20 C 0.06 0.79 7.03 72.12 0.51 1.29 16 21 O -0.33 -6.29 10.27 -91.75 -0.94 -7.23 16 22 C 0.12 2.41 6.47 22.52 0.15 2.56 16 23 C -0.16 -2.71 9.94 22.42 0.22 -2.49 16 24 C -0.08 -1.13 10.04 22.22 0.22 -0.91 16 25 C -0.16 -2.30 10.04 22.25 0.22 -2.07 16 26 C -0.09 -1.64 9.10 22.30 0.20 -1.44 16 27 C -0.16 -3.12 5.43 -19.75 -0.11 -3.23 16 28 C -0.14 -4.10 7.44 31.18 0.23 -3.87 16 29 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 30 H 0.37 20.61 7.67 -92.71 -0.71 19.90 16 31 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 32 H 0.03 0.94 7.85 -2.39 -0.02 0.92 16 33 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 34 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.11 1.78 8.07 -2.39 -0.02 1.76 16 36 H 0.10 2.61 7.57 -2.39 -0.02 2.59 16 37 H 0.42 4.94 8.67 -92.71 -0.80 4.14 16 38 H 0.06 1.47 7.47 -2.39 -0.02 1.45 16 39 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.13 1.06 8.14 -2.38 -0.02 1.04 16 42 H 0.14 1.92 8.06 -2.91 -0.02 1.89 16 43 H 0.16 1.20 8.06 -2.91 -0.02 1.17 16 44 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 45 H 0.13 2.00 6.80 -2.91 -0.02 1.98 16 46 H 0.09 2.47 7.90 -2.39 -0.02 2.45 16 47 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 Total: -1.00 -76.88 383.81 1.33 -75.55 By element: Atomic # 1 Polarization: 32.41 SS G_CDS: -0.53 Total: 31.88 kcal Atomic # 6 Polarization: -18.02 SS G_CDS: 4.50 Total: -13.51 kcal Atomic # 7 Polarization: -112.18 SS G_CDS: -3.69 Total: -115.87 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: -0.99 Total: -26.51 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.45 kcal Total: -76.88 1.33 -75.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755217708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.277 kcal (2) G-P(sol) polarization free energy of solvation -76.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds