Wall clock time and date at job start Sat Apr 11 2020 02:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00155 * 2 1 4 4 H 1.48502 * 109.46917 * 239.99718 * 3 2 1 5 5 H 1.48497 * 109.46916 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47408 * 119.99736 * 3 2 1 7 7 C 1.38813 * 120.00029 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00138 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99975 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.64583 * 0.03326 * 9 7 2 11 11 C 1.54908 * 104.82978 * 204.09500 * 10 9 7 12 12 C 1.55152 * 101.58567 * 322.99348 * 11 10 9 13 13 H 1.08999 * 110.87153 * 153.93554 * 12 11 10 14 14 N 1.46497 * 110.72011 * 277.13875 * 12 11 10 15 15 C 1.34774 * 119.99940 * 195.98788 * 14 12 11 16 16 O 1.21288 * 120.00147 * 4.47065 * 15 14 12 17 17 C 1.50700 * 120.00220 * 184.46564 * 15 14 12 18 18 H 1.09000 * 110.27727 * 139.45563 * 17 15 14 19 19 O 1.43650 * 110.30725 * 17.36797 * 17 15 14 20 20 C 1.43240 * 109.96657 * 265.41181 * 19 17 15 21 21 C 1.54376 * 107.66927 * 358.24667 * 20 19 17 22 22 C 1.54945 * 110.39686 * 261.60650 * 17 15 14 23 23 H 1.08995 * 111.13008 * 200.43087 * 22 17 15 24 24 C 1.50701 * 111.12291 * 324.55283 * 22 17 15 25 25 C 1.38235 * 120.00196 * 76.97358 * 24 22 17 26 26 C 1.38238 * 119.99691 * 179.77032 * 25 24 22 27 27 C 1.38233 * 120.00009 * 0.48069 * 26 25 24 28 28 C 1.38233 * 120.00559 * 359.79427 * 27 26 25 29 29 C 1.38238 * 119.99781 * 257.24877 * 24 22 17 30 30 C 1.47016 * 125.64825 * 179.97438 * 9 7 2 31 31 H 0.97002 * 119.99937 * 359.97438 * 1 2 3 32 32 H 1.08995 * 110.37167 * 322.93687 * 10 9 7 33 33 H 1.09003 * 110.36460 * 85.25895 * 10 9 7 34 34 H 1.09004 * 111.00247 * 204.91922 * 11 10 9 35 35 H 1.08999 * 111.00428 * 81.07080 * 11 10 9 36 36 H 0.96995 * 120.00203 * 15.99497 * 14 12 11 37 37 H 1.09003 * 109.82724 * 117.80277 * 20 19 17 38 38 H 1.09006 * 109.83201 * 238.68124 * 20 19 17 39 39 H 1.08998 * 110.84951 * 96.87751 * 21 20 19 40 40 H 1.09007 * 110.84499 * 220.50046 * 21 20 19 41 41 H 1.07993 * 120.00252 * 0.02562 * 25 24 22 42 42 H 1.08000 * 119.99621 * 180.25618 * 26 25 24 43 43 H 1.08007 * 119.99752 * 179.77449 * 27 26 25 44 44 H 1.07997 * 120.00593 * 179.97438 * 28 27 26 45 45 H 1.07996 * 120.00108 * 359.97438 * 29 24 22 46 46 H 1.09007 * 109.88409 * 59.55991 * 30 9 7 47 47 H 1.08990 * 109.88566 * 298.39058 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1416 -2.5332 -0.0007 11 6 -0.4022 -3.9322 0.6111 12 6 0.7783 -4.7525 0.0273 13 1 1.0245 -5.5937 0.6751 14 7 0.4669 -5.2171 -1.3267 15 6 1.1998 -6.1997 -1.8871 16 8 2.0640 -6.7548 -1.2422 17 6 0.9453 -6.6086 -3.3151 18 1 1.8887 -6.7941 -3.8287 19 8 0.1969 -5.5911 -3.9993 20 6 -1.2019 -5.8954 -3.9486 21 6 -1.3624 -7.2396 -3.2066 22 6 0.0491 -7.8716 -3.3636 23 1 0.1444 -8.3845 -4.3206 24 6 0.3594 -8.8020 -2.2194 25 6 -0.1075 -8.5162 -0.9500 26 6 0.1731 -9.3722 0.0986 27 6 0.9290 -10.5086 -0.1203 28 6 1.4008 -10.7915 -1.3885 29 6 1.1158 -9.9382 -2.4381 30 6 1.9317 -3.7275 0.0005 31 1 -0.4850 0.8401 0.0004 32 1 -0.5999 -1.7588 0.6143 33 1 -0.5265 -2.4869 -1.0195 34 1 -1.3593 -4.3327 0.2768 35 1 -0.3536 -3.8979 1.6995 36 1 -0.2665 -4.8177 -1.8199 37 1 -1.7318 -5.1100 -3.4098 38 1 -1.5984 -5.9818 -4.9603 39 1 -1.5995 -7.0764 -2.1553 40 1 -2.1215 -7.8586 -3.6851 41 1 -0.6950 -7.6265 -0.7784 42 1 -0.1952 -9.1511 1.0894 43 1 1.1514 -11.1755 0.6998 44 1 1.9917 -11.6792 -1.5593 45 1 1.4839 -10.1594 -3.4290 46 1 2.5578 -3.8511 0.8843 47 1 2.5286 -3.8643 -0.9011 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015825708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:33:48 Heat of formation + Delta-G solvation = -38.962552 kcal Electronic energy + Delta-G solvation = -29592.967274 eV Core-core repulsion = 25740.705960 eV Total energy + Delta-G solvation = -3852.261315 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.10333 -40.05869 -39.39768 -38.60378 -35.46627 -34.46475 -33.52385 -31.85473 -31.25478 -30.94346 -29.91682 -28.86470 -26.55620 -25.04802 -23.88198 -23.16677 -22.28417 -22.03847 -21.26271 -21.03329 -19.10192 -18.64940 -17.96564 -17.66485 -17.15439 -16.72457 -16.25081 -16.06426 -15.82023 -15.58659 -15.54292 -15.34527 -15.26420 -14.57805 -14.40338 -14.23658 -13.98929 -13.84005 -13.52034 -13.42461 -13.15860 -13.00937 -12.78777 -12.67054 -12.48465 -12.34146 -12.25070 -12.14036 -12.06165 -11.86560 -11.84725 -11.76868 -11.49572 -11.23218 -10.75997 -10.36774 -10.05563 -9.72144 -9.51240 -8.90868 -7.79398 -5.23229 0.45904 0.57940 1.45157 1.48171 1.54575 1.56781 2.19379 2.48329 2.76583 2.86916 3.30227 3.47636 3.52710 3.66240 3.73464 3.75707 3.88984 4.02263 4.06101 4.15568 4.16801 4.25213 4.27682 4.32418 4.44698 4.56934 4.62092 4.68718 4.72109 4.77424 4.84001 4.89007 4.94322 4.99660 5.01287 5.11503 5.16553 5.20119 5.41722 5.57237 5.60961 5.61777 5.67609 5.69792 5.78518 5.79306 6.17909 6.29947 6.58407 7.10099 7.24229 7.75668 8.39175 9.21937 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.019016 B = 0.003358 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.059427 B = 8335.832018 C = 8897.935156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.059 4.059 3 Si 0.979 3.021 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.246 4.246 8 H 0.071 0.929 9 N -0.621 5.621 10 C 0.157 3.843 11 C -0.131 4.131 12 C 0.148 3.852 13 H 0.095 0.905 14 N -0.699 5.699 15 C 0.504 3.496 16 O -0.563 6.563 17 C 0.071 3.929 18 H 0.129 0.871 19 O -0.384 6.384 20 C 0.033 3.967 21 C -0.149 4.149 22 C -0.057 4.057 23 H 0.131 0.869 24 C -0.085 4.085 25 C -0.114 4.114 26 C -0.132 4.132 27 C -0.129 4.129 28 C -0.129 4.129 29 C -0.117 4.117 30 C 0.128 3.872 31 H 0.249 0.751 32 H 0.077 0.923 33 H -0.008 1.008 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.404 0.596 37 H 0.073 0.927 38 H 0.100 0.900 39 H 0.078 0.922 40 H 0.118 0.882 41 H 0.115 0.885 42 H 0.126 0.874 43 H 0.136 0.864 44 H 0.142 0.858 45 H 0.141 0.859 46 H 0.024 0.976 47 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.138 -22.523 -6.646 24.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.252 4.252 3 Si 0.807 3.193 4 H -0.209 1.209 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.375 4.375 8 H 0.089 0.911 9 N -0.347 5.347 10 C 0.032 3.968 11 C -0.170 4.170 12 C 0.042 3.958 13 H 0.113 0.887 14 N -0.351 5.351 15 C 0.291 3.709 16 O -0.442 6.442 17 C 0.010 3.990 18 H 0.146 0.854 19 O -0.303 6.303 20 C -0.043 4.043 21 C -0.186 4.186 22 C -0.076 4.076 23 H 0.149 0.851 24 C -0.085 4.085 25 C -0.132 4.132 26 C -0.150 4.150 27 C -0.147 4.147 28 C -0.146 4.146 29 C -0.134 4.134 30 C 0.001 3.999 31 H 0.059 0.941 32 H 0.095 0.905 33 H 0.010 0.990 34 H 0.117 0.883 35 H 0.102 0.898 36 H 0.240 0.760 37 H 0.092 0.908 38 H 0.118 0.882 39 H 0.097 0.903 40 H 0.137 0.863 41 H 0.133 0.867 42 H 0.144 0.856 43 H 0.154 0.846 44 H 0.159 0.841 45 H 0.158 0.842 46 H 0.042 0.958 47 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges -5.477 -22.495 -6.290 23.991 hybrid contribution 0.394 1.426 -0.004 1.479 sum -5.084 -21.069 -6.294 22.569 Atomic orbital electron populations 1.70000 1.05892 1.25200 1.58135 1.25554 0.96725 1.00622 1.02335 0.85146 0.77229 0.78879 0.78009 1.20894 1.21350 1.20373 1.19352 0.90781 0.84030 1.43348 0.91133 1.44755 1.02961 1.00285 1.86741 1.21747 0.83580 0.94731 0.96745 1.23165 0.97267 0.95541 1.01040 1.21699 0.95127 0.95132 0.83794 0.88717 1.45937 1.35260 1.37416 1.16501 1.21311 0.80844 0.78936 0.89806 1.90702 1.34047 1.55152 1.64288 1.23366 0.98534 0.88570 0.88505 0.85387 1.88587 1.19119 1.46995 1.75638 1.23518 0.81268 0.96860 1.02616 1.23422 0.96872 0.95920 1.02372 1.21795 0.93983 0.92520 0.99276 0.85105 1.19519 0.99095 0.95961 0.93925 1.21107 1.00083 0.98935 0.93073 1.21300 0.99267 0.95309 0.99144 1.21416 0.97785 0.97530 0.97943 1.21406 1.00028 1.00341 0.92874 1.21264 0.97712 0.94134 1.00335 1.21749 0.95277 0.85880 0.96966 0.94121 0.90478 0.98973 0.88314 0.89806 0.75954 0.90846 0.88202 0.90335 0.86349 0.86699 0.85617 0.84615 0.84069 0.84160 0.95791 0.97869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.71 10.09 21.65 0.22 -55.49 16 2 C -0.06 -3.42 5.49 84.86 0.47 -2.95 16 3 Si 0.98 46.51 29.55 68.60 2.03 48.54 16 4 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 5 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 6 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 7 C -0.25 -14.40 10.27 84.03 0.86 -13.54 16 8 H 0.07 4.06 7.83 -2.91 -0.02 4.04 16 9 N -0.62 -33.18 3.39 -691.98 -2.35 -35.53 16 10 C 0.16 7.53 5.87 86.85 0.51 8.04 16 11 C -0.13 -4.61 6.63 31.98 0.21 -4.40 16 12 C 0.15 5.35 3.24 46.18 0.15 5.50 16 13 H 0.09 3.30 7.76 -2.39 -0.02 3.28 16 14 N -0.70 -22.51 5.02 -436.92 -2.19 -24.70 16 15 C 0.50 16.04 4.58 87.66 0.40 16.44 16 16 O -0.56 -21.34 15.24 -3.05 -0.05 -21.38 16 17 C 0.07 1.76 3.90 30.51 0.12 1.88 16 18 H 0.13 3.10 8.14 -2.39 -0.02 3.08 16 19 O -0.38 -9.80 10.33 -148.98 -1.54 -11.34 16 20 C 0.03 0.58 6.93 72.45 0.50 1.08 16 21 C -0.15 -2.19 6.14 31.91 0.20 -1.99 16 22 C -0.06 -1.01 3.22 -10.03 -0.03 -1.04 16 23 H 0.13 1.64 8.08 -2.39 -0.02 1.62 16 24 C -0.08 -1.80 4.12 -19.86 -0.08 -1.88 16 25 C -0.11 -2.67 6.80 22.27 0.15 -2.52 16 26 C -0.13 -2.99 10.05 22.27 0.22 -2.77 16 27 C -0.13 -2.60 10.05 22.27 0.22 -2.38 16 28 C -0.13 -2.43 10.05 22.27 0.22 -2.20 16 29 C -0.12 -2.25 9.70 22.27 0.22 -2.03 16 30 C 0.13 5.90 6.96 86.73 0.60 6.50 16 31 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 32 H 0.08 4.22 5.87 -2.39 -0.01 4.20 16 33 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 34 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 35 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 36 H 0.40 12.30 6.49 -92.71 -0.60 11.69 16 37 H 0.07 1.32 7.70 -2.39 -0.02 1.30 16 38 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 39 H 0.08 1.29 5.78 -2.39 -0.01 1.28 16 40 H 0.12 1.11 8.14 -2.38 -0.02 1.09 16 41 H 0.12 2.69 5.72 -2.91 -0.02 2.67 16 42 H 0.13 2.51 8.06 -2.91 -0.02 2.49 16 43 H 0.14 2.12 8.06 -2.91 -0.02 2.09 16 44 H 0.14 1.92 8.06 -2.91 -0.02 1.89 16 45 H 0.14 1.99 8.06 -2.91 -0.02 1.96 16 46 H 0.02 1.12 8.14 -2.38 -0.02 1.10 16 47 H 0.00 0.17 7.97 -2.39 -0.02 0.15 16 Total: -1.00 -73.03 369.64 1.44 -71.59 By element: Atomic # 1 Polarization: 26.21 SS G_CDS: 0.38 Total: 26.58 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: 4.95 Total: 1.74 kcal Atomic # 7 Polarization: -111.40 SS G_CDS: -4.32 Total: -115.72 kcal Atomic # 8 Polarization: -31.14 SS G_CDS: -1.59 Total: -32.72 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -73.03 1.44 -71.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015825708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.624 kcal (2) G-P(sol) polarization free energy of solvation -73.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds