Wall clock time and date at job start Sat Apr 11 2020 02:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86799 * 119.99945 * 2 1 4 4 H 1.48499 * 109.47159 * 269.99922 * 3 2 1 5 5 H 1.48499 * 109.47507 * 30.00443 * 3 2 1 6 6 H 1.48501 * 109.47005 * 149.99996 * 3 2 1 7 7 C 1.38810 * 120.00215 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00394 * 190.66380 * 7 2 1 9 9 N 1.36943 * 119.99562 * 10.66269 * 7 2 1 10 10 C 1.46932 * 120.68105 * 210.97370 * 9 7 2 11 11 C 1.53127 * 108.88070 * 234.00307 * 10 9 7 12 12 C 1.53135 * 109.31706 * 304.91044 * 11 10 9 13 13 C 1.52500 * 109.57750 * 60.52755 * 12 11 10 14 14 C 1.54173 * 110.00929 * 61.58180 * 13 12 11 15 15 C 1.55041 * 102.72456 * 97.45467 * 14 13 12 16 16 N 1.48163 * 103.30994 * 37.00948 * 15 14 13 17 17 C 1.34774 * 127.02281 * 141.00775 * 16 15 14 18 18 O 1.21778 * 119.99863 * 179.97438 * 17 16 15 19 19 C 1.41548 * 120.00336 * 359.96445 * 17 16 15 20 20 C 1.35628 * 120.00376 * 173.33323 * 19 17 16 21 21 C 1.41607 * 119.99904 * 350.25548 * 20 19 17 22 22 C 1.37945 * 126.10442 * 139.59778 * 21 20 19 23 23 C 1.40317 * 106.53052 * 179.97438 * 22 21 20 24 24 C 1.35160 * 107.20316 * 0.02562 * 23 22 21 25 25 O 1.34017 * 109.03367 * 359.77100 * 24 23 22 26 26 C 1.47607 * 105.95092 * 320.97857 * 16 15 14 27 27 C 1.47036 * 120.68345 * 30.95097 * 9 7 2 28 28 H 0.97003 * 119.99424 * 359.97438 * 1 2 3 29 29 H 1.09006 * 109.56521 * 353.81723 * 10 9 7 30 30 H 1.08992 * 109.56981 * 114.04788 * 10 9 7 31 31 H 1.09001 * 109.46340 * 184.98160 * 11 10 9 32 32 H 1.08994 * 109.51427 * 64.87765 * 11 10 9 33 33 H 1.09007 * 109.44887 * 300.50389 * 12 11 10 34 34 H 1.08996 * 109.45193 * 180.54975 * 12 11 10 35 35 H 1.08998 * 110.76580 * 215.76795 * 14 13 12 36 36 H 1.09007 * 110.75911 * 339.15027 * 14 13 12 37 37 H 1.08999 * 110.65135 * 278.55594 * 15 14 13 38 38 H 1.08996 * 110.79150 * 155.52752 * 15 14 13 39 39 H 1.08004 * 120.00002 * 353.33664 * 19 17 16 40 40 H 1.07997 * 120.00065 * 170.25536 * 20 19 17 41 41 H 1.08002 * 126.73730 * 359.97438 * 22 21 20 42 42 H 1.08004 * 126.39798 * 180.02562 * 23 22 21 43 43 H 1.07993 * 125.47783 * 179.97438 * 24 23 22 44 44 H 1.09004 * 109.97436 * 265.97884 * 26 16 15 45 45 H 1.09000 * 110.00665 * 144.72437 * 26 16 15 46 46 H 1.09000 * 109.58148 * 7.43666 * 27 9 7 47 47 H 1.08997 * 109.69572 * 247.09310 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0763 -1.2103 0.1725 9 7 1.3433 -2.3777 -0.2205 10 6 1.8041 -3.6283 0.3981 11 6 1.9977 -4.6809 -0.6970 12 6 0.6986 -4.8272 -1.4944 13 6 0.3440 -3.4932 -2.1428 14 6 1.4559 -3.0714 -3.1239 15 6 0.8994 -3.5404 -4.4929 16 7 -0.5538 -3.2752 -4.3792 17 6 -1.3704 -2.8037 -5.3421 18 8 -2.5532 -2.6330 -5.1077 19 6 -0.8534 -2.5065 -6.6259 20 6 -1.6943 -2.1618 -7.6326 21 6 -3.0937 -2.2972 -7.4639 22 6 -4.0543 -1.4055 -7.8940 23 6 -5.2946 -1.9411 -7.5147 24 6 -5.0487 -3.1103 -6.8828 25 8 -3.7259 -3.3239 -6.8579 26 6 -0.9247 -3.6338 -2.9962 27 6 0.1510 -2.4144 -1.0802 28 1 -0.4849 0.8401 0.0004 29 1 2.7510 -3.4552 0.9097 30 1 1.0605 -3.9767 1.1148 31 1 2.2540 -5.6369 -0.2406 32 1 2.8009 -4.3685 -1.3643 33 1 -0.1062 -5.1304 -0.8246 34 1 0.8309 -5.5830 -2.2685 35 1 1.5920 -1.9900 -3.1121 36 1 2.3905 -3.5820 -2.8913 37 1 1.0858 -4.6042 -4.6395 38 1 1.3336 -2.9595 -5.3066 39 1 0.2109 -2.5544 -6.8037 40 1 -1.2966 -1.7841 -8.5629 41 1 -3.8851 -0.4773 -8.4194 42 1 -6.2645 -1.5013 -7.6943 43 1 -5.7979 -3.7682 -6.4679 44 1 -1.2844 -4.6622 -2.9619 45 1 -1.6967 -2.9572 -2.6298 46 1 0.0185 -1.4459 -1.5626 47 1 -0.7282 -2.6465 -0.4792 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040043321.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:36:07 Heat of formation + Delta-G solvation = 36.671783 kcal Electronic energy + Delta-G solvation = -29140.759109 eV Core-core repulsion = 25291.777545 eV Total energy + Delta-G solvation = -3848.981564 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -42.31942 -40.12408 -38.48615 -35.76582 -34.02492 -33.07694 -32.75436 -31.29440 -29.93047 -29.20254 -28.78413 -25.96279 -25.29472 -23.53925 -22.82971 -22.00862 -21.58393 -20.88214 -20.19109 -18.79004 -18.11999 -17.41573 -16.70844 -16.57107 -15.81139 -15.59475 -15.16894 -14.84657 -14.18537 -14.10593 -13.97396 -13.72111 -13.44833 -13.18730 -13.00065 -12.78960 -12.66724 -12.57637 -12.44628 -12.31635 -12.09122 -11.88149 -11.62905 -11.09061 -10.94771 -10.72225 -10.60972 -10.37966 -10.16668 -10.10919 -10.04230 -9.81360 -9.75801 -9.65347 -9.48002 -9.39403 -8.48478 -8.35428 -7.90066 -6.60470 -5.77141 -3.24854 0.59771 2.17794 2.73777 3.22148 3.35605 3.37259 3.43577 3.45188 3.59203 4.48355 4.68043 4.77447 5.00832 5.04023 5.07430 5.12086 5.27692 5.32045 5.46875 5.48331 5.57905 5.63896 5.66670 5.68971 5.75765 5.86526 5.98109 5.99932 6.02616 6.09144 6.16279 6.25715 6.29093 6.36168 6.43441 6.46704 6.53077 6.59541 6.72766 6.81429 6.87246 6.93949 7.03352 7.26530 7.37018 7.69641 7.79913 7.85470 8.45359 8.48193 9.23007 9.84910 10.43586 11.30684 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.013726 B = 0.003475 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.469732 B = 8056.135842 C = 9069.682742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.006 3.994 3 Si 0.901 3.099 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.252 4.252 8 H 0.064 0.936 9 N -0.589 5.589 10 C 0.144 3.856 11 C -0.135 4.135 12 C -0.094 4.094 13 C -0.095 4.095 14 C -0.109 4.109 15 C 0.095 3.905 16 N -0.610 5.610 17 C 0.553 3.447 18 O -0.531 6.531 19 C -0.191 4.191 20 C -0.007 4.007 21 C 0.015 3.985 22 C -0.186 4.186 23 C -0.226 4.226 24 C -0.019 4.019 25 O -0.135 6.135 26 C 0.120 3.880 27 C 0.190 3.810 28 H 0.254 0.746 29 H 0.051 0.949 30 H 0.016 0.984 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.046 0.954 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.136 0.864 40 H 0.154 0.846 41 H 0.147 0.853 42 H 0.145 0.855 43 H 0.197 0.803 44 H 0.058 0.942 45 H 0.078 0.922 46 H 0.090 0.910 47 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.412 -8.782 -15.511 17.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.193 4.193 3 Si 0.731 3.269 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.382 4.382 8 H 0.081 0.919 9 N -0.311 5.311 10 C 0.017 3.983 11 C -0.174 4.174 12 C -0.132 4.132 13 C -0.098 4.098 14 C -0.147 4.147 15 C -0.028 4.028 16 N -0.343 5.343 17 C 0.345 3.655 18 O -0.411 6.411 19 C -0.212 4.212 20 C -0.027 4.027 21 C -0.036 4.036 22 C -0.205 4.205 23 C -0.245 4.245 24 C -0.090 4.090 25 O -0.028 6.028 26 C -0.003 4.003 27 C 0.064 3.936 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.034 0.966 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.154 0.846 40 H 0.172 0.828 41 H 0.165 0.835 42 H 0.163 0.837 43 H 0.213 0.787 44 H 0.076 0.924 45 H 0.096 0.904 46 H 0.108 0.892 47 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -3.041 -8.752 -15.275 17.865 hybrid contribution 0.333 1.085 0.082 1.138 sum -2.707 -7.667 -15.192 17.231 Atomic orbital electron populations 1.69965 1.05221 1.25498 1.54016 1.25147 0.95342 0.98303 1.00538 0.86308 0.79054 0.83831 0.77661 1.21476 1.21714 1.20436 1.19138 0.90776 0.83867 1.44374 0.91851 1.43983 1.31436 1.03370 1.52354 1.20905 0.97521 0.87207 0.92653 1.22076 0.97195 0.98840 0.99302 1.21360 0.98008 0.95481 0.98331 1.21847 0.92945 0.98193 0.96780 1.22676 0.97993 1.02544 0.91494 1.22713 0.80291 1.00078 0.99669 1.48783 1.09716 1.63470 1.12340 1.16694 0.85714 0.78253 0.84830 1.90862 1.15359 1.53010 1.81852 1.22346 1.01116 1.04265 0.93429 1.20591 0.88266 0.95178 0.98676 1.19557 0.93084 0.90810 1.00109 1.22106 0.91779 1.00988 1.05640 1.21598 0.99072 0.97546 1.06273 1.24096 0.82922 0.99535 1.02412 1.84245 1.18634 1.41075 1.58894 1.22044 0.98330 0.99685 0.80227 1.20756 0.88153 0.95870 0.88798 0.93566 0.93011 0.96619 0.93241 0.92069 0.92566 0.93545 0.90174 0.90253 0.91497 0.90835 0.84578 0.82838 0.83547 0.83744 0.78672 0.92394 0.90401 0.89215 0.96488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.25 11.04 55.49 0.61 -25.64 16 2 C 0.01 0.15 5.05 -17.43 -0.09 0.07 16 3 Si 0.90 21.61 29.57 -169.99 -5.03 16.59 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.25 -6.71 9.59 -15.06 -0.14 -6.86 16 8 H 0.06 1.67 7.85 -52.49 -0.41 1.25 16 9 N -0.59 -14.22 2.80 -172.60 -0.48 -14.71 16 10 C 0.14 2.91 6.50 -3.74 -0.02 2.89 16 11 C -0.14 -2.20 5.87 -26.60 -0.16 -2.36 16 12 C -0.09 -1.50 4.47 -26.92 -0.12 -1.62 16 13 C -0.10 -1.71 0.63 -154.05 -0.10 -1.81 16 14 C -0.11 -1.79 5.75 -25.04 -0.14 -1.94 16 15 C 0.10 1.28 6.90 -2.05 -0.01 1.27 16 16 N -0.61 -9.99 3.30 -173.27 -0.57 -10.57 16 17 C 0.55 9.44 7.44 -15.00 -0.11 9.33 16 18 O -0.53 -10.80 12.87 -19.53 -0.25 -11.05 16 19 C -0.19 -2.45 9.42 -39.25 -0.37 -2.82 16 20 C -0.01 -0.08 9.95 -39.23 -0.39 -0.47 16 21 C 0.01 0.21 5.27 -38.41 -0.20 0.01 16 22 C -0.19 -2.37 10.90 -38.91 -0.42 -2.79 16 23 C -0.23 -2.76 10.87 -39.90 -0.43 -3.19 16 24 C -0.02 -0.25 12.06 29.64 0.36 0.11 16 25 O -0.14 -2.12 7.95 -19.97 -0.16 -2.28 16 26 C 0.12 2.12 6.28 -3.15 -0.02 2.10 16 27 C 0.19 4.43 3.60 -3.93 -0.01 4.41 16 28 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.05 1.03 7.93 -51.93 -0.41 0.62 16 30 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.99 6.19 -51.93 -0.32 0.67 16 33 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.08 1.56 7.74 -51.93 -0.40 1.15 16 36 H 0.08 1.23 5.89 -51.93 -0.31 0.92 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.83 6.57 -51.93 -0.34 0.48 16 39 H 0.14 1.32 6.52 -52.48 -0.34 0.98 16 40 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 41 H 0.15 1.49 8.06 -52.49 -0.42 1.07 16 42 H 0.14 1.38 8.06 -52.48 -0.42 0.96 16 43 H 0.20 1.80 8.06 -52.49 -0.42 1.38 16 44 H 0.06 0.95 7.68 -51.93 -0.40 0.55 16 45 H 0.08 1.59 7.59 -51.93 -0.39 1.19 16 46 H 0.09 2.41 5.98 -51.93 -0.31 2.10 16 47 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 368.71 15.07 5.56 5.56 Total: -1.00 -33.13 368.71 -9.72 -42.85 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -7.00 Total: 2.91 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: -2.40 Total: -3.67 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: -0.44 Total: -50.91 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: -0.41 Total: -13.32 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.13 -9.72 -42.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040043321.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.522 kcal (2) G-P(sol) polarization free energy of solvation -33.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds