Wall clock time and date at job start Sat Apr 11 2020 02:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38256 * 120.00120 * 2 1 4 4 C 1.38207 * 119.99839 * 180.02562 * 3 2 1 5 5 C 1.38259 * 120.00440 * 359.95058 * 4 3 2 6 6 C 1.38212 * 119.99544 * 359.97438 * 5 4 3 7 7 C 1.50703 * 120.00014 * 180.02562 * 6 5 4 8 8 H 1.08992 * 110.53528 * 222.82940 * 7 6 5 9 9 N 1.47311 * 110.59663 * 345.82516 * 7 6 5 10 10 C 1.34525 * 106.62248 * 118.30870 * 9 7 6 11 11 O 1.21536 * 123.77314 * 180.20894 * 10 9 7 12 12 N 1.33793 * 112.45536 * 0.37435 * 10 9 7 13 13 C 1.46501 * 124.17653 * 179.86719 * 12 10 9 14 14 C 1.53006 * 109.46971 * 269.70507 * 13 12 10 15 15 C 1.52998 * 109.46802 * 299.99861 * 14 13 12 16 16 C 1.52997 * 109.47087 * 59.99878 * 14 13 12 17 17 C 1.50699 * 109.46651 * 180.02562 * 14 13 12 18 18 H 1.07998 * 120.00430 * 1.19920 * 17 14 13 19 19 C 1.37882 * 119.99823 * 181.20255 * 17 14 13 20 20 N 1.31506 * 120.00118 * 194.17300 * 19 17 14 21 21 Si 1.86807 * 119.99786 * 14.16960 * 19 17 14 22 22 H 1.48503 * 109.47142 * 84.53711 * 21 19 17 23 23 H 1.48497 * 109.46917 * 204.54028 * 21 19 17 24 24 H 1.48495 * 109.47170 * 324.54095 * 21 19 17 25 25 C 1.34766 * 111.64212 * 359.60388 * 12 10 9 26 26 O 1.21236 * 127.15438 * 180.19472 * 25 12 10 27 27 C 1.38214 * 119.99677 * 180.16594 * 2 1 3 28 28 C 1.50696 * 119.99960 * 0.03977 * 27 2 1 29 29 H 1.08997 * 109.47078 * 90.00194 * 1 2 3 30 30 H 1.08996 * 109.47659 * 210.00530 * 1 2 3 31 31 H 1.09006 * 109.47066 * 330.00420 * 1 2 3 32 32 H 1.08004 * 120.00066 * 359.97438 * 3 2 1 33 33 H 1.08004 * 119.99950 * 179.97438 * 4 3 2 34 34 H 1.07996 * 120.00184 * 179.97438 * 5 4 3 35 35 H 0.97004 * 126.69105 * 298.55782 * 9 7 6 36 36 H 1.09001 * 109.46806 * 29.70410 * 13 12 10 37 37 H 1.08994 * 109.47241 * 149.70335 * 13 12 10 38 38 H 1.09002 * 109.47054 * 69.50825 * 15 14 13 39 39 H 1.08998 * 109.47034 * 189.50767 * 15 14 13 40 40 H 1.08999 * 109.47272 * 309.50639 * 15 14 13 41 41 H 1.09000 * 109.47141 * 60.00271 * 16 14 13 42 42 H 1.08998 * 109.46778 * 180.02562 * 16 14 13 43 43 H 1.09003 * 109.47087 * 300.00015 * 16 14 13 44 44 H 0.97007 * 120.00241 * 180.02562 * 20 19 17 45 45 H 1.09000 * 109.46989 * 270.18727 * 28 27 2 46 46 H 1.08998 * 109.47322 * 30.18990 * 28 27 2 47 47 H 1.09009 * 109.46931 * 150.18896 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 -0.0005 5 6 4.2717 -0.0001 0.0000 6 6 3.5806 -1.1970 0.0015 7 6 4.3340 -2.5022 0.0027 8 1 3.8766 -3.2083 -0.6903 9 7 5.7509 -2.2829 -0.3358 10 6 6.4676 -2.6853 0.7291 11 8 7.6808 -2.6368 0.7844 12 7 5.6959 -3.1480 1.7193 13 6 6.2091 -3.6542 2.9947 14 6 6.4600 -5.1594 2.8822 15 6 5.1490 -5.8707 2.5415 16 6 7.4858 -5.4243 1.7784 17 6 6.9872 -5.6801 4.1943 18 1 7.1109 -5.0088 5.0313 19 6 7.3118 -7.0136 4.3264 20 7 7.5022 -7.5289 5.5213 21 14 7.4811 -8.0885 2.8079 22 1 8.8506 -7.9468 2.2513 23 1 7.2407 -9.5068 3.1762 24 1 6.4867 -7.6662 1.7892 25 6 4.3880 -3.0856 1.4006 26 8 3.4496 -3.4260 2.0887 27 6 2.1980 -1.1970 -0.0035 28 6 1.4444 -2.5020 -0.0082 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3633 0.8901 0.5138 32 1 1.6583 2.1327 -0.0004 33 1 4.1204 2.1326 -0.0010 34 1 5.3517 -0.0001 -0.0009 35 1 6.0990 -1.9162 -1.1636 36 1 7.1431 -3.1473 3.2373 37 1 5.4783 -3.4654 3.7810 38 1 4.8548 -5.6218 1.5218 39 1 5.2876 -6.9485 2.6268 40 1 4.3704 -5.5487 3.2331 41 1 8.4198 -4.9175 2.0211 42 1 7.6641 -6.4966 1.6980 43 1 7.1039 -5.0476 0.8295 44 1 7.7309 -8.4670 5.6142 45 1 1.2592 -2.8183 1.0184 46 1 0.4938 -2.3708 -0.5251 47 1 2.0353 -3.2609 -0.5212 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000420071663.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:35:58 Heat of formation + Delta-G solvation = -22.585828 kcal Electronic energy + Delta-G solvation = -29730.475709 eV Core-core repulsion = 25878.924542 eV Total energy + Delta-G solvation = -3851.551167 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.66075 -40.63807 -39.59800 -38.42057 -37.24398 -35.39707 -34.25702 -33.75120 -33.00547 -29.06663 -28.61649 -28.14667 -27.59586 -27.07804 -26.92118 -24.07359 -22.75534 -21.73867 -21.61783 -20.49275 -18.99994 -18.53337 -18.13581 -17.68956 -17.32736 -16.89939 -16.63001 -16.39613 -16.14956 -15.62537 -15.41481 -15.11850 -15.02067 -14.72713 -14.71688 -14.58668 -14.16527 -14.01225 -13.86179 -13.77263 -13.49385 -13.38564 -12.87733 -12.79114 -12.76714 -12.68603 -12.50108 -12.04835 -12.03615 -11.96974 -11.77483 -11.76423 -11.30755 -11.13060 -11.03048 -10.64125 -10.57594 -10.24684 -9.62416 -9.45081 -8.33932 -6.33840 0.21007 0.42331 0.62542 1.26709 1.30571 1.33251 1.43481 1.98736 2.11825 2.30039 2.67316 3.01965 3.09058 3.38450 3.73627 3.93555 3.96950 4.04269 4.05642 4.17200 4.27683 4.36573 4.43438 4.46615 4.47387 4.66830 4.72470 4.74720 4.78302 4.80812 4.83539 4.85535 4.88384 4.94435 4.95807 5.02923 5.19324 5.27530 5.35289 5.38831 5.50877 5.54519 5.63029 5.68732 5.70107 5.80983 6.06241 6.11224 6.25113 6.40012 6.68724 7.11697 7.30613 8.82555 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.021361 B = 0.003603 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.461539 B = 7768.878962 C = 8323.356306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.096 4.096 3 C -0.111 4.111 4 C -0.128 4.128 5 C -0.114 4.114 6 C -0.110 4.110 7 C 0.149 3.851 8 H 0.160 0.840 9 N -0.703 5.703 10 C 0.700 3.300 11 O -0.568 6.568 12 N -0.573 5.573 13 C 0.149 3.851 14 C 0.024 3.976 15 C -0.127 4.127 16 C -0.130 4.130 17 C -0.513 4.513 18 H 0.042 0.958 19 C 0.027 3.973 20 N -0.938 5.938 21 Si 0.936 3.064 22 H -0.284 1.284 23 H -0.308 1.308 24 H -0.222 1.222 25 C 0.522 3.478 26 O -0.476 6.476 27 C -0.068 4.068 28 C -0.123 4.123 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.145 0.855 33 H 0.142 0.858 34 H 0.125 0.875 35 H 0.453 0.547 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.037 0.963 39 H 0.043 0.957 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.031 0.969 43 H 0.044 0.956 44 H 0.266 0.734 45 H 0.069 0.931 46 H 0.088 0.912 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.740 17.298 -18.882 29.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.096 4.096 3 C -0.129 4.129 4 C -0.146 4.146 5 C -0.132 4.132 6 C -0.112 4.112 7 C 0.040 3.960 8 H 0.177 0.823 9 N -0.369 5.369 10 C 0.401 3.599 11 O -0.444 6.444 12 N -0.318 5.318 13 C 0.028 3.972 14 C 0.022 3.978 15 C -0.185 4.185 16 C -0.187 4.187 17 C -0.551 4.551 18 H 0.061 0.939 19 C -0.172 4.172 20 N -0.577 5.577 21 Si 0.766 3.234 22 H -0.212 1.212 23 H -0.237 1.237 24 H -0.147 1.147 25 C 0.310 3.690 26 O -0.346 6.346 27 C -0.069 4.069 28 C -0.179 4.179 29 H 0.103 0.897 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.163 0.837 33 H 0.160 0.840 34 H 0.143 0.857 35 H 0.301 0.699 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.056 0.944 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.049 0.951 43 H 0.063 0.937 44 H 0.075 0.925 45 H 0.088 0.912 46 H 0.107 0.893 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.547 16.951 -18.267 28.856 hybrid contribution 0.978 -0.713 -0.129 1.218 sum -13.569 16.238 -18.396 28.039 Atomic orbital electron populations 1.20872 0.89355 1.03591 1.03342 1.20082 0.97504 0.92126 0.99906 1.21415 0.94314 0.98372 0.98824 1.21354 0.94754 0.98194 1.00283 1.21080 1.00354 0.91967 0.99797 1.19281 0.93392 0.92462 1.06016 1.20870 0.83337 0.97483 0.94316 0.82297 1.45369 1.05240 1.68165 1.18091 1.15968 0.85106 0.77837 0.81006 1.91001 1.11504 1.60606 1.81247 1.46522 1.09029 1.58143 1.18116 1.21585 0.99652 0.94902 0.81053 1.18788 0.93102 0.91872 0.94013 1.22120 0.97624 1.00123 0.98589 1.22169 0.99901 0.98831 0.97812 1.20924 1.43559 0.94309 0.96313 0.93928 1.25667 0.94369 0.99040 0.98113 1.70067 1.49133 1.14212 1.24266 0.86442 0.79479 0.76041 0.81421 1.21152 1.23674 1.14669 1.21137 0.82128 0.76678 0.89083 1.90767 1.39871 1.46534 1.57423 1.19749 0.92166 0.96446 0.98522 1.20970 1.00742 0.93186 1.02986 0.89718 0.91113 0.90529 0.83702 0.84015 0.85735 0.69929 0.90014 0.89803 0.94406 0.93842 0.93489 0.93531 0.95093 0.93690 0.92523 0.91236 0.89313 0.91122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.24 9.19 71.24 0.65 -0.58 16 2 C -0.10 -1.52 5.88 -19.87 -0.12 -1.64 16 3 C -0.11 -1.62 9.70 22.27 0.22 -1.40 16 4 C -0.13 -2.01 10.05 22.27 0.22 -1.78 16 5 C -0.11 -2.10 9.37 22.27 0.21 -1.89 16 6 C -0.11 -2.15 5.17 -19.86 -0.10 -2.26 16 7 C 0.15 3.07 3.26 43.63 0.14 3.21 16 8 H 0.16 2.46 6.60 -2.39 -0.02 2.44 16 9 N -0.70 -14.60 4.81 -463.22 -2.23 -16.83 16 10 C 0.70 21.82 7.06 179.44 1.27 23.09 16 11 O -0.57 -21.62 16.35 -3.83 -0.06 -21.69 16 12 N -0.57 -19.36 2.15 -773.12 -1.66 -21.02 16 13 C 0.15 6.08 4.66 86.38 0.40 6.49 16 14 C 0.02 1.10 0.57 -52.93 -0.03 1.07 16 15 C -0.13 -5.54 6.58 71.98 0.47 -5.07 16 16 C -0.13 -5.81 6.58 71.98 0.47 -5.34 16 17 C -0.51 -28.94 8.62 25.60 0.22 -28.72 16 18 H 0.04 2.63 7.99 -2.91 -0.02 2.60 16 19 C 0.03 1.54 5.32 84.66 0.45 1.99 16 20 N -0.94 -58.67 13.96 21.45 0.30 -58.37 16 21 Si 0.94 45.62 22.79 68.60 1.56 47.19 16 22 H -0.28 -13.73 7.10 99.48 0.71 -13.02 16 23 H -0.31 -15.05 7.11 99.48 0.71 -14.34 16 24 H -0.22 -9.76 4.65 99.48 0.46 -9.29 16 25 C 0.52 15.62 6.07 87.94 0.53 16.15 16 26 O -0.48 -16.24 15.34 -2.89 -0.04 -16.28 16 27 C -0.07 -1.25 5.88 -19.87 -0.12 -1.37 16 28 C -0.12 -2.01 8.09 71.23 0.58 -1.43 16 29 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.07 0.79 6.72 -2.39 -0.02 0.77 16 31 H 0.08 0.67 8.09 -2.38 -0.02 0.65 16 32 H 0.15 1.38 8.06 -2.91 -0.02 1.36 16 33 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 34 H 0.12 2.24 7.08 -2.91 -0.02 2.22 16 35 H 0.45 6.53 8.96 -92.71 -0.83 5.70 16 36 H 0.08 3.44 7.85 -2.39 -0.02 3.42 16 37 H 0.08 3.47 8.00 -2.39 -0.02 3.45 16 38 H 0.04 1.44 6.99 -2.39 -0.02 1.42 16 39 H 0.04 1.97 4.31 -2.39 -0.01 1.96 16 40 H 0.05 2.08 7.71 -2.39 -0.02 2.06 16 41 H 0.05 2.16 8.11 -2.39 -0.02 2.14 16 42 H 0.03 1.41 2.26 -2.39 -0.01 1.41 16 43 H 0.04 1.79 6.20 -2.39 -0.01 1.78 16 44 H 0.27 15.68 8.31 -92.70 -0.77 14.91 16 45 H 0.07 1.43 7.43 -2.39 -0.02 1.41 16 46 H 0.09 1.05 6.72 -2.39 -0.02 1.04 16 47 H 0.07 1.05 6.21 -2.38 -0.01 1.04 16 Total: -1.00 -72.38 356.10 3.28 -69.10 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -0.06 Total: 17.37 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: 5.48 Total: 0.52 kcal Atomic # 7 Polarization: -92.62 SS G_CDS: -3.59 Total: -96.21 kcal Atomic # 8 Polarization: -37.86 SS G_CDS: -0.11 Total: -37.97 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.56 Total: 47.19 kcal Total: -72.38 3.28 -69.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420071663.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.512 kcal (2) G-P(sol) polarization free energy of solvation -72.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds