Wall clock time and date at job start Sat Apr 11 2020 02:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38283 * 119.93076 * 2 1 4 4 C 1.38113 * 120.07274 * 180.02562 * 3 2 1 5 5 C 1.38870 * 119.92521 * 359.97438 * 4 3 2 6 6 N 1.39931 * 120.06754 * 179.97438 * 5 4 3 7 7 C 1.45749 * 117.95239 * 269.35633 * 6 5 4 8 8 C 1.52918 * 110.49249 * 160.92415 * 7 6 5 9 9 C 1.53351 * 108.67196 * 50.75099 * 8 7 6 10 10 C 1.53066 * 108.42611 * 292.47320 * 9 8 7 11 11 H 1.08998 * 109.40080 * 169.03177 * 10 9 8 12 12 N 1.46502 * 109.39917 * 288.76821 * 10 9 8 13 13 C 1.34779 * 120.00022 * 204.99990 * 12 10 9 14 14 O 1.21283 * 120.00042 * 0.02562 * 13 12 10 15 15 C 1.50697 * 119.99793 * 180.02562 * 13 12 10 16 16 C 1.53011 * 109.46970 * 179.97438 * 15 13 12 17 17 C 1.50697 * 109.46970 * 180.02562 * 16 15 13 18 18 H 1.08005 * 120.00279 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99587 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00100 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99817 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47165 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47043 * 119.99927 * 21 19 17 24 24 H 1.48493 * 109.47430 * 240.00098 * 21 19 17 25 25 C 1.33362 * 117.94289 * 89.33534 * 6 5 4 26 26 O 1.21281 * 118.24373 * 2.19965 * 25 6 5 27 27 C 1.38875 * 119.86507 * 0.27528 * 5 4 3 28 28 C 1.38112 * 119.92345 * 359.47218 * 27 5 4 29 29 H 1.09009 * 109.46663 * 89.99985 * 1 2 3 30 30 H 1.08999 * 109.46936 * 209.99581 * 1 2 3 31 31 H 1.09001 * 109.47171 * 330.00162 * 1 2 3 32 32 H 1.08001 * 119.96359 * 0.02562 * 3 2 1 33 33 H 1.08000 * 120.03482 * 179.97438 * 4 3 2 34 34 H 1.09000 * 109.29968 * 40.61150 * 7 6 5 35 35 H 1.08994 * 109.29897 * 281.23940 * 7 6 5 36 36 H 1.09004 * 109.59957 * 291.00168 * 8 7 6 37 37 H 1.08993 * 109.73895 * 170.58943 * 8 7 6 38 38 H 1.08998 * 109.67211 * 52.20328 * 9 8 7 39 39 H 1.08996 * 109.67461 * 172.73591 * 9 8 7 40 40 H 0.97002 * 120.00309 * 25.00841 * 12 10 9 41 41 H 1.08998 * 109.47622 * 299.99868 * 15 13 12 42 42 H 1.09000 * 109.47170 * 60.00456 * 15 13 12 43 43 H 1.08998 * 109.46859 * 300.00357 * 16 15 13 44 44 H 1.09000 * 109.46784 * 60.00241 * 16 15 13 45 45 H 0.97003 * 119.99609 * 180.02562 * 20 19 17 46 46 H 1.07992 * 120.03693 * 179.70032 * 27 5 4 47 47 H 1.07997 * 119.96287 * 180.25566 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1984 0.0000 4 6 3.5781 1.2018 -0.0005 5 6 4.2739 0.0000 -0.0005 6 7 5.6732 0.0000 -0.0016 7 6 6.3554 -0.0151 -1.2895 8 6 7.8022 0.4549 -1.1344 9 6 8.4575 -0.3397 0.0018 10 6 7.7929 0.0640 1.3203 11 1 8.1040 -0.6226 2.1076 12 7 8.2021 1.4254 1.6746 13 6 8.1846 1.8204 2.9631 14 8 7.8306 1.0488 3.8292 15 6 8.6050 3.2210 3.3274 16 6 8.4927 3.4094 4.8417 17 6 8.9125 4.8102 5.2061 18 1 9.2274 5.4974 4.4347 19 6 8.8945 5.2143 6.5242 20 7 8.5105 4.3776 7.4633 21 14 9.4155 6.9504 6.9759 22 1 9.7995 7.6879 5.7455 23 1 8.2856 7.6495 7.6392 24 1 10.5749 6.8941 7.9020 25 6 6.2990 0.0142 1.1760 26 8 5.6256 -0.0147 2.1842 27 6 3.5781 -1.2019 -0.0058 28 6 2.1970 -1.1984 0.0000 29 1 -0.3633 0.0000 -1.0278 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6553 2.1327 0.0004 33 1 4.1164 2.1381 -0.0010 34 1 5.8338 0.6465 -1.9812 35 1 6.3468 -1.0288 -1.6899 36 1 7.8176 1.5179 -0.8935 37 1 8.3468 0.2824 -2.0627 38 1 8.3167 -1.4071 -0.1683 39 1 9.5224 -0.1113 0.0426 40 1 8.4855 2.0425 0.9819 41 1 9.6370 3.3832 3.0163 42 1 7.9566 3.9377 2.8235 43 1 7.4606 3.2473 5.1525 44 1 9.1409 2.6927 5.3461 45 1 8.4975 4.6621 8.3906 46 1 4.1163 -2.1381 -0.0107 47 1 1.6553 -2.1327 0.0001 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292127708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:35:05 Heat of formation + Delta-G solvation = -78.325890 kcal Electronic energy + Delta-G solvation = -28054.209220 eV Core-core repulsion = 24200.240983 eV Total energy + Delta-G solvation = -3853.968237 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.32383 -40.68453 -39.66889 -37.76136 -36.48501 -35.57005 -34.06549 -33.00535 -32.01796 -31.99562 -30.15530 -27.67893 -27.55256 -25.33510 -23.94392 -23.82579 -23.64451 -22.11104 -21.43308 -19.83735 -18.92718 -18.50677 -17.91598 -17.55599 -17.24020 -16.81916 -16.55683 -16.45058 -16.26651 -15.74633 -15.47612 -15.10854 -14.74230 -14.59904 -14.47160 -14.41023 -14.37171 -14.25110 -14.03802 -13.63794 -13.25580 -13.12047 -12.93619 -12.85843 -12.55900 -12.45454 -12.31291 -12.23170 -11.99708 -11.97616 -11.95602 -11.65255 -11.31572 -11.30353 -10.77090 -10.59939 -10.11098 -10.00156 -9.95190 -9.54322 -8.19180 -6.34176 0.19152 0.36521 1.22404 1.40724 1.43080 1.56315 1.62266 1.91762 2.32456 2.45432 2.65982 3.13606 3.49159 3.63500 3.74714 3.83697 3.87527 3.95571 3.98237 4.02264 4.30217 4.39152 4.42583 4.43695 4.48423 4.51822 4.52813 4.70737 4.74271 4.77843 4.83429 4.99083 5.03312 5.04201 5.05619 5.09525 5.25018 5.29886 5.33367 5.46199 5.48119 5.56850 5.58853 5.59422 5.83268 6.02197 6.14901 6.25656 6.51849 6.84667 7.07361 7.31532 7.36460 8.94065 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.012802 B = 0.002788 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.679177 B =10040.886735 C =11408.771104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.089 4.089 3 C -0.121 4.121 4 C -0.124 4.124 5 C 0.107 3.893 6 N -0.556 5.556 7 C 0.105 3.895 8 C -0.130 4.130 9 C -0.121 4.121 10 C 0.138 3.862 11 H 0.087 0.913 12 N -0.704 5.704 13 C 0.507 3.493 14 O -0.572 6.572 15 C -0.115 4.115 16 C 0.042 3.958 17 C -0.541 4.541 18 H 0.079 0.921 19 C -0.011 4.011 20 N -0.940 5.940 21 Si 0.978 3.022 22 H -0.249 1.249 23 H -0.282 1.282 24 H -0.279 1.279 25 C 0.497 3.503 26 O -0.578 6.578 27 C -0.118 4.118 28 C -0.118 4.118 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.142 0.858 33 H 0.117 0.883 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.132 0.868 38 H 0.102 0.898 39 H 0.109 0.891 40 H 0.421 0.579 41 H 0.115 0.885 42 H 0.100 0.900 43 H -0.027 1.027 44 H -0.017 1.017 45 H 0.263 0.737 46 H 0.128 0.872 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.513 -10.340 -30.265 32.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.089 4.089 3 C -0.140 4.140 4 C -0.144 4.144 5 C 0.017 3.983 6 N -0.287 5.287 7 C -0.015 4.015 8 C -0.167 4.167 9 C -0.158 4.158 10 C 0.030 3.970 11 H 0.105 0.895 12 N -0.362 5.362 13 C 0.295 3.705 14 O -0.449 6.449 15 C -0.155 4.155 16 C 0.004 3.996 17 C -0.579 4.579 18 H 0.097 0.903 19 C -0.208 4.208 20 N -0.580 5.580 21 Si 0.801 3.199 22 H -0.173 1.173 23 H -0.208 1.208 24 H -0.204 1.204 25 C 0.285 3.715 26 O -0.455 6.455 27 C -0.137 4.137 28 C -0.136 4.136 29 H 0.107 0.893 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.160 0.840 33 H 0.135 0.865 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.092 0.908 37 H 0.150 0.850 38 H 0.120 0.880 39 H 0.128 0.872 40 H 0.260 0.740 41 H 0.133 0.867 42 H 0.118 0.882 43 H -0.009 1.009 44 H 0.002 0.998 45 H 0.071 0.929 46 H 0.146 0.854 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -8.076 -10.927 -28.963 31.992 hybrid contribution 0.108 0.787 1.021 1.294 sum -7.968 -10.140 -27.942 30.774 Atomic orbital electron populations 1.20855 0.88793 1.03644 1.03571 1.20372 0.97934 0.92686 0.97950 1.21210 0.93144 0.99096 1.00538 1.21411 0.95352 0.97282 1.00310 1.17806 0.83445 0.93772 1.03232 1.45128 1.03866 1.72548 1.07135 1.21883 0.93859 1.03755 0.82010 1.21985 0.93422 1.00366 1.00975 1.22081 1.01752 1.02550 0.89435 1.20923 0.88234 0.86354 1.01531 0.89457 1.45765 1.68519 1.13920 1.07967 1.21550 0.75850 0.90670 0.82428 1.90719 1.47435 1.56556 1.50206 1.21628 1.04004 0.91109 0.98725 1.18688 0.94343 0.95706 0.90833 1.21734 1.44469 0.98201 0.93469 0.90257 1.26221 0.95218 1.02732 0.96627 1.70214 1.48826 1.37876 1.01076 0.85214 0.77672 0.78153 0.78825 1.17268 1.20801 1.20446 1.21302 0.92124 0.75601 0.82502 1.90801 1.67387 1.49474 1.37847 1.21434 0.95217 0.97201 0.99888 1.21243 0.93182 0.98949 1.00240 0.89324 0.90585 0.91048 0.84045 0.86484 0.89136 0.89233 0.90844 0.84963 0.87977 0.87210 0.73953 0.86734 0.88176 1.00888 0.99844 0.92879 0.85377 0.83340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.40 10.01 71.24 0.71 -0.69 16 2 C -0.09 -1.72 5.88 -19.84 -0.12 -1.84 16 3 C -0.12 -2.63 9.69 22.25 0.22 -2.41 16 4 C -0.12 -3.16 9.97 22.39 0.22 -2.94 16 5 C 0.11 2.76 4.01 38.15 0.15 2.91 16 6 N -0.56 -12.95 2.85 -635.83 -1.81 -14.76 16 7 C 0.10 1.21 6.35 86.49 0.55 1.76 16 8 C -0.13 -0.96 5.98 30.68 0.18 -0.78 16 9 C -0.12 -1.44 5.59 30.73 0.17 -1.26 16 10 C 0.14 3.65 2.69 44.10 0.12 3.77 16 11 H 0.09 2.88 7.58 -2.39 -0.02 2.86 16 12 N -0.70 -19.87 4.97 -446.79 -2.22 -22.09 16 13 C 0.51 21.28 7.78 87.66 0.68 21.96 16 14 O -0.57 -31.32 15.21 -3.02 -0.05 -31.36 16 15 C -0.11 -4.85 5.64 29.85 0.17 -4.68 16 16 C 0.04 2.47 4.26 29.85 0.13 2.59 16 17 C -0.54 -31.77 9.11 25.60 0.23 -31.53 16 18 H 0.08 4.19 7.74 -2.91 -0.02 4.17 16 19 C -0.01 -0.65 5.46 84.66 0.46 -0.19 16 20 N -0.94 -61.91 13.29 21.45 0.28 -61.63 16 21 Si 0.98 45.41 29.54 68.60 2.03 47.43 16 22 H -0.25 -10.55 7.11 99.48 0.71 -9.84 16 23 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 24 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 25 C 0.50 15.97 6.96 87.71 0.61 16.58 16 26 O -0.58 -26.64 16.28 -3.02 -0.05 -26.69 16 27 C -0.12 -2.73 9.97 22.39 0.22 -2.51 16 28 C -0.12 -2.31 9.69 22.25 0.22 -2.10 16 29 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 30 H 0.08 0.83 8.08 -2.39 -0.02 0.81 16 31 H 0.07 0.86 8.08 -2.39 -0.02 0.84 16 32 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 33 H 0.12 2.95 8.06 -2.91 -0.02 2.93 16 34 H 0.09 0.86 8.08 -2.39 -0.02 0.84 16 35 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.07 0.61 6.96 -2.39 -0.02 0.59 16 37 H 0.13 0.06 8.14 -2.39 -0.02 0.04 16 38 H 0.10 0.95 8.13 -2.39 -0.02 0.93 16 39 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.42 7.94 7.49 -92.71 -0.69 7.24 16 41 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16 42 H 0.10 3.77 8.14 -2.39 -0.02 3.76 16 43 H -0.03 -1.86 8.10 -2.39 -0.02 -1.88 16 44 H -0.02 -1.11 8.10 -2.39 -0.02 -1.13 16 45 H 0.26 16.12 8.31 -92.71 -0.77 15.35 16 46 H 0.13 2.65 8.06 -2.91 -0.02 2.63 16 47 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -96.94 390.22 3.39 -93.55 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 0.27 Total: 16.89 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: 4.93 Total: -1.35 kcal Atomic # 7 Polarization: -94.73 SS G_CDS: -3.75 Total: -98.47 kcal Atomic # 8 Polarization: -57.96 SS G_CDS: -0.10 Total: -58.05 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.43 kcal Total: -96.94 3.39 -93.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292127708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.224 kcal (2) G-P(sol) polarization free energy of solvation -96.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds