Wall clock time and date at job start Sat Apr 11 2020 02:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34775 * 119.99988 * 2 1 4 4 O 1.21279 * 120.00239 * 184.88826 * 3 2 1 5 5 C 1.50703 * 119.99876 * 4.88288 * 3 2 1 6 6 C 1.53001 * 109.43767 * 166.27426 * 5 3 2 7 7 C 1.53069 * 109.44113 * 286.19295 * 5 3 2 8 8 C 1.53404 * 108.29422 * 168.25050 * 7 5 3 9 9 O 1.42829 * 108.37302 * 295.25485 * 8 7 5 10 10 C 1.35846 * 117.86246 * 49.14979 * 9 8 7 11 11 C 1.39139 * 118.49929 * 162.98350 * 10 9 8 12 12 C 1.37973 * 120.21795 * 179.81756 * 11 10 9 13 13 C 1.38289 * 119.95216 * 359.97438 * 12 11 10 14 14 C 1.38106 * 119.98760 * 0.08037 * 13 12 11 15 15 C 1.38314 * 121.79052 * 342.88599 * 10 9 8 16 16 C 1.46502 * 120.00083 * 179.97438 * 2 1 3 17 17 C 1.53492 * 114.20898 * 299.99954 * 16 2 1 18 18 N 1.47069 * 87.98818 * 87.51784 * 17 16 2 19 19 C 1.36932 * 136.06080 * 207.08391 * 18 17 16 20 20 H 1.07997 * 119.99875 * 0.02562 * 19 18 17 21 21 C 1.38815 * 120.00046 * 180.02562 * 19 18 17 22 22 N 1.31621 * 120.00085 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99895 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47266 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47231 * 120.00439 * 23 21 19 26 26 H 1.48502 * 109.47025 * 240.00042 * 23 21 19 27 27 C 1.47075 * 87.88304 * 27.12050 * 18 17 16 28 28 H 1.09002 * 109.46859 * 264.61967 * 1 2 3 29 29 H 1.08993 * 109.47072 * 24.62567 * 1 2 3 30 30 H 1.09002 * 109.46815 * 144.62441 * 1 2 3 31 31 H 1.08997 * 109.46960 * 59.99859 * 6 5 3 32 32 H 1.08994 * 109.47291 * 180.02562 * 6 5 3 33 33 H 1.09006 * 109.46957 * 300.00568 * 6 5 3 34 34 H 1.08998 * 109.69956 * 287.95253 * 7 5 3 35 35 H 1.09001 * 109.69812 * 48.54955 * 7 5 3 36 36 H 1.09002 * 109.68164 * 54.97460 * 8 7 5 37 37 H 1.09004 * 109.68586 * 175.53208 * 8 7 5 38 38 H 1.07997 * 119.89581 * 359.78848 * 11 10 9 39 39 H 1.07996 * 120.02334 * 179.97438 * 12 11 10 40 40 H 1.08002 * 120.00459 * 180.02562 * 13 12 11 41 41 H 1.08005 * 119.84113 * 179.97438 * 14 13 12 42 42 H 1.09002 * 113.41223 * 166.79517 * 16 2 1 43 43 H 1.09003 * 113.46487 * 332.73830 * 17 16 2 44 44 H 1.08994 * 113.46874 * 202.30288 * 17 16 2 45 45 H 0.96996 * 120.00350 * 179.97438 * 22 21 19 46 46 H 1.08997 * 113.46606 * 87.65734 * 27 18 17 47 47 H 1.08989 * 113.46749 * 218.04338 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3484 1.1691 -0.0895 5 6 1.3894 2.4699 0.1111 6 6 2.3731 3.5976 0.4301 7 6 0.6859 2.7677 -1.2153 8 6 -0.2962 3.9245 -0.9905 9 8 -1.3074 3.4863 -0.0819 10 6 -0.9095 2.8778 1.0656 11 6 -1.8220 2.7691 2.1103 12 6 -1.4567 2.1544 3.2903 13 6 -0.1799 1.6437 3.4363 14 6 0.7289 1.7509 2.4018 15 6 0.3676 2.3683 1.2151 16 6 2.1975 -1.2687 0.0006 17 6 1.9061 -2.1633 1.2133 18 7 0.7743 -2.7256 0.4612 19 6 -0.4280 -3.3020 0.7733 20 1 -0.7170 -3.4222 1.8069 21 6 -1.2751 -3.7320 -0.2388 22 7 -0.9226 -3.5860 -1.4985 23 14 -2.9154 -4.5177 0.1870 24 1 -3.0736 -4.5646 1.6627 25 1 -4.0168 -3.7151 -0.4031 26 1 -2.9603 -5.8974 -0.3603 27 6 1.5023 -2.3972 -0.7737 28 1 -0.3633 -0.0964 1.0232 29 1 -0.3633 0.9341 -0.4282 30 1 -0.3633 -0.8380 -0.5950 31 1 3.1130 3.6705 -0.3669 32 1 1.8316 4.5400 0.5110 33 1 2.8755 3.3853 1.3739 34 1 1.4229 3.0521 -1.9664 35 1 0.1424 1.8839 -1.5494 36 1 0.2329 4.7782 -0.5670 37 1 -0.7526 4.2083 -1.9388 38 1 -2.8195 3.1675 1.9975 39 1 -2.1674 2.0720 4.0993 40 1 0.1069 1.1620 4.3594 41 1 1.7256 1.3516 2.5186 42 1 3.2575 -1.1570 -0.2280 43 1 1.6040 -1.6067 2.1006 44 1 2.6943 -2.8878 1.4177 45 1 -1.5144 -3.8868 -2.2057 46 1 2.1830 -3.1840 -1.0986 47 1 0.8569 -2.0405 -1.5763 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044192517.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:34:30 Heat of formation + Delta-G solvation = 34.775471 kcal Electronic energy + Delta-G solvation = -30747.850683 eV Core-core repulsion = 26898.786889 eV Total energy + Delta-G solvation = -3849.063794 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.58676 -39.43547 -37.87434 -37.47964 -35.16787 -33.84158 -32.03941 -30.71093 -30.28167 -28.39707 -27.90430 -26.11429 -25.26317 -24.58815 -23.85959 -23.01923 -22.39263 -20.59235 -19.19561 -18.33066 -17.79126 -17.13908 -16.64999 -16.32869 -15.98954 -15.54141 -15.00151 -14.82122 -14.57376 -14.24222 -14.01889 -13.86889 -13.74277 -13.62869 -13.13046 -12.81562 -12.68068 -12.46725 -12.30679 -12.13423 -11.93080 -11.81993 -11.68416 -11.37492 -11.29372 -11.00403 -10.91759 -10.89862 -10.64052 -10.59108 -10.52610 -10.07499 -9.87269 -9.45935 -9.41897 -8.87670 -8.63058 -8.08666 -7.91440 -6.92055 -5.81325 -3.13339 1.35277 1.50438 2.87172 3.25050 3.35530 3.41935 3.42862 3.43980 3.80019 4.42101 4.45532 4.49380 4.60411 4.74936 4.93918 5.09937 5.12649 5.16981 5.24025 5.33370 5.42031 5.45398 5.47456 5.50983 5.52276 5.62715 5.71908 5.78119 5.88611 6.00280 6.08195 6.12434 6.18326 6.18989 6.33381 6.37456 6.48461 6.50321 6.57832 6.61903 6.75896 6.81239 7.00126 7.15084 7.28866 7.43907 7.50860 7.90754 8.00031 8.55155 8.99570 9.65788 10.59232 11.35734 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.012227 B = 0.005196 C = 0.004530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.508078 B = 5387.582196 C = 6178.866955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.565 5.565 3 C 0.524 3.476 4 O -0.553 6.553 5 C -0.033 4.033 6 C -0.122 4.122 7 C -0.159 4.159 8 C 0.065 3.935 9 O -0.315 6.315 10 C 0.136 3.864 11 C -0.149 4.149 12 C -0.084 4.084 13 C -0.146 4.146 14 C -0.069 4.069 15 C -0.141 4.141 16 C 0.081 3.919 17 C 0.106 3.894 18 N -0.604 5.604 19 C -0.211 4.211 20 H 0.080 0.920 21 C -0.006 4.006 22 N -0.920 5.920 23 Si 0.908 3.092 24 H -0.280 1.280 25 H -0.290 1.290 26 H -0.291 1.291 27 C 0.145 3.855 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.102 0.898 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.067 0.933 37 H 0.110 0.890 38 H 0.129 0.871 39 H 0.127 0.873 40 H 0.122 0.878 41 H 0.119 0.881 42 H 0.098 0.902 43 H 0.041 0.959 44 H 0.041 0.959 45 H 0.253 0.747 46 H 0.036 0.964 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.722 16.406 4.034 16.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.294 5.294 3 C 0.311 3.689 4 O -0.432 6.432 5 C -0.036 4.036 6 C -0.179 4.179 7 C -0.196 4.196 8 C -0.010 4.010 9 O -0.229 6.229 10 C 0.091 3.909 11 C -0.168 4.168 12 C -0.102 4.102 13 C -0.164 4.164 14 C -0.087 4.087 15 C -0.143 4.143 16 C -0.024 4.024 17 C -0.021 4.021 18 N -0.330 5.330 19 C -0.338 4.338 20 H 0.098 0.902 21 C -0.203 4.203 22 N -0.567 5.567 23 Si 0.738 3.262 24 H -0.205 1.205 25 H -0.217 1.217 26 H -0.218 1.218 27 C 0.019 3.981 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.120 0.880 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.110 0.890 35 H 0.113 0.887 36 H 0.085 0.915 37 H 0.128 0.872 38 H 0.147 0.853 39 H 0.145 0.855 40 H 0.140 0.860 41 H 0.137 0.863 42 H 0.116 0.884 43 H 0.059 0.941 44 H 0.059 0.941 45 H 0.063 0.937 46 H 0.054 0.946 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.810 16.259 3.860 16.809 hybrid contribution -0.719 -0.903 0.176 1.168 sum 1.090 15.356 4.036 15.915 Atomic orbital electron populations 1.22204 0.78175 1.02843 1.03149 1.47269 1.07598 1.04404 1.70083 1.20097 0.87389 0.84744 0.76625 1.90639 1.13938 1.87270 1.51321 1.19629 0.94673 0.95109 0.94166 1.21720 0.97729 0.95432 1.03059 1.22525 0.99813 1.00855 0.96457 1.22992 0.89236 0.95687 0.93107 1.85999 1.35317 1.72900 1.28646 1.18567 0.92288 0.94000 0.86080 1.20527 0.99736 1.04639 0.91883 1.20901 0.96216 0.96443 0.96650 1.20966 0.93929 1.02153 0.99389 1.20859 0.99597 0.96306 0.91972 1.19381 0.94005 1.04544 0.96327 1.22695 0.95643 0.83685 1.00423 1.22816 0.90921 0.93421 0.94948 1.45664 1.14005 1.71326 1.02043 1.18926 0.90331 1.32082 0.92487 0.90242 1.24733 0.98733 1.01596 0.95214 1.69819 1.36900 1.52029 0.97965 0.86106 0.83705 0.78839 0.77520 1.20502 1.21677 1.21809 1.22448 0.92391 0.90778 0.92487 0.92632 0.92284 0.87969 0.91117 0.92242 0.91788 0.89001 0.88699 0.91456 0.87180 0.85341 0.85542 0.85965 0.86292 0.88413 0.94114 0.94108 0.93685 0.94612 0.90495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.50 7.46 59.85 0.45 1.95 16 2 N -0.56 -10.47 2.92 -173.71 -0.51 -10.98 16 3 C 0.52 9.07 5.28 -10.98 -0.06 9.02 16 4 O -0.55 -10.82 15.50 5.56 0.09 -10.74 16 5 C -0.03 -0.45 0.39 -156.74 -0.06 -0.51 16 6 C -0.12 -1.47 7.63 37.16 0.28 -1.19 16 7 C -0.16 -1.93 4.56 -26.49 -0.12 -2.05 16 8 C 0.06 0.66 6.96 37.37 0.26 0.92 16 9 O -0.31 -4.13 10.27 -19.26 -0.20 -4.32 16 10 C 0.14 1.88 5.66 -39.22 -0.22 1.65 16 11 C -0.15 -1.92 9.94 -39.34 -0.39 -2.31 16 12 C -0.08 -1.02 10.04 -39.66 -0.40 -1.42 16 13 C -0.15 -1.90 10.04 -39.61 -0.40 -2.30 16 14 C -0.07 -0.99 7.59 -39.51 -0.30 -1.29 16 15 C -0.14 -2.00 2.39 -104.44 -0.25 -2.25 16 16 C 0.08 1.60 4.69 -67.81 -0.32 1.28 16 17 C 0.11 2.20 8.32 -8.50 -0.07 2.13 16 18 N -0.60 -14.74 2.52 -184.77 -0.47 -15.20 16 19 C -0.21 -5.63 10.55 -15.06 -0.16 -5.79 16 20 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 21 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 22 N -0.92 -26.05 11.51 55.49 0.64 -25.41 16 23 Si 0.91 21.61 29.55 -169.99 -5.02 16.58 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 27 C 0.15 3.34 6.43 -8.50 -0.05 3.28 16 28 H 0.06 1.12 6.96 -51.93 -0.36 0.76 16 29 H 0.06 1.02 3.01 -51.93 -0.16 0.86 16 30 H 0.10 2.37 5.73 -51.93 -0.30 2.07 16 31 H 0.07 0.85 7.95 -51.93 -0.41 0.44 16 32 H 0.06 0.60 6.65 -51.93 -0.35 0.25 16 33 H 0.06 0.81 8.12 -51.93 -0.42 0.39 16 34 H 0.09 0.97 8.10 -51.93 -0.42 0.55 16 35 H 0.09 1.33 5.64 -51.93 -0.29 1.03 16 36 H 0.07 0.59 6.56 -51.93 -0.34 0.25 16 37 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 39 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 40 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 41 H 0.12 1.79 7.36 -52.48 -0.39 1.41 16 42 H 0.10 1.89 7.28 -51.93 -0.38 1.51 16 43 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 46 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 47 H 0.08 1.94 6.15 -51.93 -0.32 1.62 16 LS Contribution 359.42 15.07 5.42 5.42 Total: -1.00 -30.52 359.42 -8.60 -39.12 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -6.64 Total: 4.67 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -1.91 Total: 0.86 kcal Atomic # 7 Polarization: -51.26 SS G_CDS: -0.33 Total: -51.59 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.11 Total: -15.06 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.52 -8.60 -39.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044192517.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.896 kcal (2) G-P(sol) polarization free energy of solvation -30.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds