Wall clock time and date at job start Sat Apr 11 2020 02:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30439 * 125.99217 * 2 1 4 4 N 1.39929 * 108.90076 * 179.97438 * 3 2 1 5 5 C 1.46501 * 125.75427 * 180.02562 * 4 3 2 6 6 C 1.52994 * 109.47830 * 304.97696 * 5 4 3 7 7 F 1.39897 * 109.47153 * 64.99665 * 6 5 4 8 8 F 1.39892 * 109.47885 * 184.99953 * 6 5 4 9 9 C 1.34257 * 108.49157 * 359.97438 * 4 3 2 10 10 C 1.38042 * 107.41780 * 0.02562 * 9 4 3 11 11 C 1.47428 * 126.41835 * 180.26423 * 10 9 4 12 12 O 1.21598 * 120.00379 * 179.68712 * 11 10 9 13 13 N 1.34783 * 119.99757 * 359.68651 * 11 10 9 14 14 C 1.46496 * 119.99910 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.46986 * 179.97438 * 14 13 11 16 16 H 1.08999 * 109.46844 * 54.99858 * 15 14 13 17 17 C 1.52997 * 109.47252 * 294.99912 * 15 14 13 18 18 C 1.53002 * 109.47152 * 174.99538 * 15 14 13 19 19 N 1.46498 * 109.47246 * 185.00018 * 18 15 14 20 20 C 1.36940 * 120.00045 * 180.02562 * 19 18 15 21 21 H 1.08005 * 119.99587 * 0.02562 * 20 19 18 22 22 C 1.38810 * 119.99877 * 180.02562 * 20 19 18 23 23 N 1.31610 * 119.99945 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 119.99718 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47113 * 90.00270 * 24 22 20 26 26 H 1.48496 * 109.47254 * 209.99877 * 24 22 20 27 27 H 1.48499 * 109.47397 * 330.00181 * 24 22 20 28 28 H 1.08993 * 109.47393 * 270.04752 * 1 2 3 29 29 H 1.09006 * 109.46979 * 30.04630 * 1 2 3 30 30 H 1.09010 * 109.47236 * 150.04145 * 1 2 3 31 31 H 1.09004 * 109.46849 * 64.97872 * 5 4 3 32 32 H 1.09002 * 109.47234 * 184.97261 * 5 4 3 33 33 H 1.09002 * 109.46678 * 305.00433 * 6 5 4 34 34 H 1.07999 * 126.29112 * 179.97438 * 9 4 3 35 35 H 0.96997 * 119.99754 * 359.97438 * 13 11 10 36 36 H 1.08999 * 109.47012 * 299.99854 * 14 13 11 37 37 H 1.08999 * 109.46984 * 59.99700 * 14 13 11 38 38 H 1.09001 * 109.47257 * 179.97438 * 17 15 14 39 39 H 1.08999 * 109.47151 * 299.99758 * 17 15 14 40 40 H 1.08993 * 109.47078 * 60.00147 * 17 15 14 41 41 H 1.09001 * 109.47176 * 305.00559 * 18 15 14 42 42 H 1.09001 * 109.46485 * 64.99937 * 18 15 14 43 43 H 0.97001 * 119.99623 * 0.02562 * 19 18 15 44 44 H 0.97011 * 120.00088 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0554 0.0000 4 7 3.6110 0.6441 0.0006 5 6 4.7787 1.5289 0.0013 6 6 4.6865 2.4963 -1.1804 7 9 3.5833 3.3391 -1.0082 8 9 5.8540 3.2640 -1.2470 9 6 3.6438 -0.6980 0.0015 10 6 2.3372 -1.1433 0.0009 11 6 1.8914 -2.5486 0.0071 12 8 0.7038 -2.8097 0.0116 13 7 2.8003 -3.5439 0.0077 14 6 2.3573 -4.9402 0.0132 15 6 3.5781 -5.8625 0.0121 16 1 4.2260 -5.6087 0.8511 17 6 4.3484 -5.6874 -1.2982 18 6 3.1193 -7.3162 0.1436 19 7 4.2899 -8.1889 0.2626 20 6 4.1247 -9.5422 0.3918 21 1 3.1314 -9.9660 0.4056 22 6 5.2339 -10.3690 0.5051 23 7 6.4442 -9.8524 0.4888 24 14 5.0086 -12.2150 0.6806 25 1 4.9888 -12.8415 -0.6657 26 1 6.1320 -12.7778 1.4719 27 1 3.7258 -12.4934 1.3750 28 1 -0.3634 0.0009 1.0276 29 1 -0.3633 0.8896 -0.5146 30 1 -0.3634 -0.8904 -0.5132 31 1 4.8052 2.0946 0.9327 32 1 5.6866 0.9324 -0.0874 33 1 4.5704 1.9304 -2.1048 34 1 4.5297 -1.3158 0.0018 35 1 3.7476 -3.3355 0.0037 36 1 1.7601 -5.1284 0.9054 37 1 1.7552 -5.1339 -0.8745 38 1 5.2184 -6.3441 -1.2988 39 1 3.7006 -5.9413 -2.1372 40 1 4.6753 -4.6519 -1.3919 41 1 2.4958 -7.4214 1.0315 42 1 2.5448 -7.5970 -0.7391 43 1 5.1819 -7.8082 0.2499 44 1 7.2194 -10.4303 0.5676 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753620286.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:36:34 Heat of formation + Delta-G solvation = -61.866513 kcal Electronic energy + Delta-G solvation = -27377.123168 eV Core-core repulsion = 23001.931884 eV Total energy + Delta-G solvation = -4375.191284 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.161 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.55270 -47.53718 -41.85976 -39.33144 -36.82130 -34.98600 -34.37006 -32.66148 -31.37146 -30.49053 -29.83030 -27.77922 -26.48662 -25.36855 -24.07446 -22.90947 -22.21921 -20.55110 -20.38543 -19.73227 -18.57352 -18.06657 -17.75992 -17.12465 -16.79845 -16.14510 -15.84879 -15.65642 -15.21636 -14.68398 -14.50010 -14.43174 -14.21616 -13.96688 -13.87939 -13.81013 -13.59481 -13.22651 -13.03789 -12.96875 -12.83425 -12.62125 -12.34319 -12.25635 -12.07040 -11.77794 -11.19021 -11.08330 -10.93158 -10.71905 -10.59870 -10.44369 -10.09671 -9.88515 -9.79039 -9.67899 -9.22169 -8.91269 -8.88975 -6.94327 -5.79317 -3.07481 1.02282 1.60819 1.85798 2.94172 3.20171 3.32612 3.42569 3.48079 3.49499 3.50440 3.56455 3.93543 4.12861 4.27750 4.48016 4.57697 4.59710 4.78476 4.95154 5.06758 5.12976 5.20519 5.35575 5.50335 5.56079 5.63453 5.72955 5.79100 5.94599 5.99081 6.08592 6.19365 6.20390 6.24024 6.37050 6.49384 6.62275 6.75232 6.84837 7.14307 7.51518 7.68941 8.23584 8.40024 9.51373 10.08555 10.43236 11.43743 Molecular weight = 330.16amu Principal moments of inertia in cm(-1) A = 0.019331 B = 0.001965 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.079102 B =14246.035483 C =15481.850665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.137 3.863 3 N -0.289 5.289 4 N -0.370 5.370 5 C 0.085 3.915 6 C 0.258 3.742 7 F -0.185 7.185 8 F -0.196 7.196 9 C 0.102 3.898 10 C -0.277 4.277 11 C 0.591 3.409 12 O -0.540 6.540 13 N -0.723 5.723 14 C 0.129 3.871 15 C -0.110 4.110 16 H 0.076 0.924 17 C -0.141 4.141 18 C 0.160 3.840 19 N -0.731 5.731 20 C -0.238 4.238 21 H 0.071 0.929 22 C -0.015 4.015 23 N -0.935 5.935 24 Si 0.908 3.092 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.282 1.282 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.098 0.902 31 H 0.114 0.886 32 H 0.132 0.868 33 H 0.115 0.885 34 H 0.187 0.813 35 H 0.395 0.605 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.053 0.947 40 H 0.040 0.960 41 H 0.021 0.979 42 H 0.023 0.977 43 H 0.384 0.616 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.903 26.833 -2.850 27.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.032 4.032 3 N -0.109 5.109 4 N -0.149 5.149 5 C -0.038 4.038 6 C 0.203 3.797 7 F -0.167 7.167 8 F -0.177 7.177 9 C -0.047 4.047 10 C -0.292 4.292 11 C 0.378 3.622 12 O -0.418 6.418 13 N -0.374 5.374 14 C 0.005 3.995 15 C -0.130 4.130 16 H 0.094 0.906 17 C -0.198 4.198 18 C 0.032 3.968 19 N -0.376 5.376 20 C -0.369 4.369 21 H 0.089 0.911 22 C -0.211 4.211 23 N -0.584 5.584 24 Si 0.739 3.261 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.207 1.207 28 H 0.100 0.900 29 H 0.091 0.909 30 H 0.116 0.884 31 H 0.132 0.868 32 H 0.150 0.850 33 H 0.132 0.868 34 H 0.204 0.796 35 H 0.230 0.770 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.072 0.928 40 H 0.059 0.941 41 H 0.039 0.961 42 H 0.040 0.960 43 H 0.218 0.782 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.673 27.866 -2.820 28.248 hybrid contribution 1.068 -1.578 0.168 1.913 sum -2.605 26.288 -2.652 26.550 Atomic orbital electron populations 1.20380 0.85323 1.04223 1.03776 1.22605 0.97488 0.88590 0.94479 1.77399 0.85182 1.22154 1.26201 1.48014 1.05699 1.04376 1.56770 1.22778 0.86618 0.93643 1.00780 1.21947 0.72161 0.84989 1.00569 1.93086 1.53367 1.73456 1.96750 1.93034 1.49233 1.77976 1.97494 1.23169 0.99305 0.84640 0.97606 1.20375 0.91935 0.94847 1.22016 1.17177 0.85708 0.83303 0.76049 1.90753 1.16259 1.84170 1.50636 1.45894 1.09351 1.06540 1.75649 1.21412 0.96936 0.78631 1.02527 1.21552 0.95974 0.96398 0.99029 0.90601 1.21786 1.01183 1.00164 0.96689 1.20581 0.91173 0.86997 0.98068 1.42337 1.03218 1.03400 1.88596 1.19244 0.92729 0.83121 1.41808 0.91129 1.24732 0.95236 0.98082 1.03036 1.69652 0.96907 1.34136 1.57710 0.86176 0.76910 0.85503 0.77536 1.21729 1.21804 1.20736 0.90021 0.90950 0.88374 0.86837 0.84973 0.86782 0.79631 0.77042 0.91232 0.91232 0.91192 0.92758 0.94071 0.96069 0.95951 0.78249 0.93549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 9.91 36.00 0.36 -0.40 16 2 C 0.14 1.50 7.26 -82.02 -0.60 0.91 16 3 N -0.29 -3.07 11.63 33.89 0.39 -2.68 16 4 N -0.37 -2.73 3.65 -60.81 -0.22 -2.96 16 5 C 0.08 0.33 6.71 -4.04 -0.03 0.31 16 6 C 0.26 1.36 5.50 37.15 0.20 1.57 16 7 F -0.19 -1.66 16.55 2.25 0.04 -1.62 16 8 F -0.20 -1.21 17.34 2.25 0.04 -1.17 16 9 C 0.10 0.71 10.94 -16.56 -0.18 0.52 16 10 C -0.28 -2.86 6.13 -105.07 -0.64 -3.51 16 11 C 0.59 7.33 7.81 -12.52 -0.10 7.23 16 12 O -0.54 -8.48 14.92 5.28 0.08 -8.40 16 13 N -0.72 -7.79 5.27 -61.38 -0.32 -8.12 16 14 C 0.13 1.66 5.06 -4.04 -0.02 1.64 16 15 C -0.11 -1.59 2.46 -90.62 -0.22 -1.81 16 16 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 17 C -0.14 -1.92 8.94 37.16 0.33 -1.59 16 18 C 0.16 3.07 5.65 -4.04 -0.02 3.05 16 19 N -0.73 -17.87 5.33 -59.91 -0.32 -18.19 16 20 C -0.24 -6.56 9.99 -15.06 -0.15 -6.71 16 21 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 22 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 23 N -0.94 -27.74 13.06 55.49 0.72 -27.02 16 24 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 27 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 28 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.10 1.06 6.56 -51.92 -0.34 0.72 16 31 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.13 0.04 8.06 -51.93 -0.42 -0.38 16 33 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.19 0.52 7.46 -52.49 -0.39 0.13 16 35 H 0.40 3.18 6.58 -40.82 -0.27 2.91 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.07 1.14 7.18 -51.93 -0.37 0.77 16 39 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.04 0.43 7.18 -51.93 -0.37 0.06 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.38 9.72 6.85 -40.82 -0.28 9.44 16 44 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 377.94 15.07 5.70 5.70 Total: -1.00 -35.39 377.94 -6.30 -41.69 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -6.22 Total: 4.91 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -1.16 Total: 0.67 kcal Atomic # 7 Polarization: -59.21 SS G_CDS: 0.25 Total: -58.95 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: 0.08 Total: -8.40 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 0.08 Total: -2.79 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.39 -6.30 -41.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753620286.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.176 kcal (2) G-P(sol) polarization free energy of solvation -35.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds