Wall clock time and date at job start Sat Apr 11 2020 02:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30439 * 125.99217 * 2 1 4 4 N 1.39929 * 108.90076 * 179.97438 * 3 2 1 5 5 C 1.46501 * 125.75427 * 180.02562 * 4 3 2 6 6 C 1.52994 * 109.47830 * 304.97696 * 5 4 3 7 7 F 1.39897 * 109.47153 * 64.99665 * 6 5 4 8 8 F 1.39892 * 109.47885 * 184.99953 * 6 5 4 9 9 C 1.34257 * 108.49157 * 359.97438 * 4 3 2 10 10 C 1.38042 * 107.41780 * 0.02562 * 9 4 3 11 11 C 1.47428 * 126.41835 * 180.26423 * 10 9 4 12 12 O 1.21598 * 120.00379 * 179.68712 * 11 10 9 13 13 N 1.34783 * 119.99757 * 359.68651 * 11 10 9 14 14 C 1.46496 * 119.99910 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.46986 * 179.97438 * 14 13 11 16 16 H 1.08999 * 109.46844 * 54.99858 * 15 14 13 17 17 C 1.52997 * 109.47252 * 294.99912 * 15 14 13 18 18 C 1.53002 * 109.47152 * 174.99538 * 15 14 13 19 19 N 1.46498 * 109.47246 * 185.00018 * 18 15 14 20 20 C 1.36940 * 120.00045 * 180.02562 * 19 18 15 21 21 H 1.08005 * 119.99587 * 0.02562 * 20 19 18 22 22 C 1.38810 * 119.99877 * 180.02562 * 20 19 18 23 23 N 1.31610 * 119.99945 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 119.99718 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47113 * 90.00270 * 24 22 20 26 26 H 1.48496 * 109.47254 * 209.99877 * 24 22 20 27 27 H 1.48499 * 109.47397 * 330.00181 * 24 22 20 28 28 H 1.08993 * 109.47393 * 270.04752 * 1 2 3 29 29 H 1.09006 * 109.46979 * 30.04630 * 1 2 3 30 30 H 1.09010 * 109.47236 * 150.04145 * 1 2 3 31 31 H 1.09004 * 109.46849 * 64.97872 * 5 4 3 32 32 H 1.09002 * 109.47234 * 184.97261 * 5 4 3 33 33 H 1.09002 * 109.46678 * 305.00433 * 6 5 4 34 34 H 1.07999 * 126.29112 * 179.97438 * 9 4 3 35 35 H 0.96997 * 119.99754 * 359.97438 * 13 11 10 36 36 H 1.08999 * 109.47012 * 299.99854 * 14 13 11 37 37 H 1.08999 * 109.46984 * 59.99700 * 14 13 11 38 38 H 1.09001 * 109.47257 * 179.97438 * 17 15 14 39 39 H 1.08999 * 109.47151 * 299.99758 * 17 15 14 40 40 H 1.08993 * 109.47078 * 60.00147 * 17 15 14 41 41 H 1.09001 * 109.47176 * 305.00559 * 18 15 14 42 42 H 1.09001 * 109.46485 * 64.99937 * 18 15 14 43 43 H 0.97001 * 119.99623 * 0.02562 * 19 18 15 44 44 H 0.97011 * 120.00088 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0554 0.0000 4 7 3.6110 0.6441 0.0006 5 6 4.7787 1.5289 0.0013 6 6 4.6865 2.4963 -1.1804 7 9 3.5833 3.3391 -1.0082 8 9 5.8540 3.2640 -1.2470 9 6 3.6438 -0.6980 0.0015 10 6 2.3372 -1.1433 0.0009 11 6 1.8914 -2.5486 0.0071 12 8 0.7038 -2.8097 0.0116 13 7 2.8003 -3.5439 0.0077 14 6 2.3573 -4.9402 0.0132 15 6 3.5781 -5.8625 0.0121 16 1 4.2260 -5.6087 0.8511 17 6 4.3484 -5.6874 -1.2982 18 6 3.1193 -7.3162 0.1436 19 7 4.2899 -8.1889 0.2626 20 6 4.1247 -9.5422 0.3918 21 1 3.1314 -9.9660 0.4056 22 6 5.2339 -10.3690 0.5051 23 7 6.4442 -9.8524 0.4888 24 14 5.0086 -12.2150 0.6806 25 1 4.9888 -12.8415 -0.6657 26 1 6.1320 -12.7778 1.4719 27 1 3.7258 -12.4934 1.3750 28 1 -0.3634 0.0009 1.0276 29 1 -0.3633 0.8896 -0.5146 30 1 -0.3634 -0.8904 -0.5132 31 1 4.8052 2.0946 0.9327 32 1 5.6866 0.9324 -0.0874 33 1 4.5704 1.9304 -2.1048 34 1 4.5297 -1.3158 0.0018 35 1 3.7476 -3.3355 0.0037 36 1 1.7601 -5.1284 0.9054 37 1 1.7552 -5.1339 -0.8745 38 1 5.2184 -6.3441 -1.2988 39 1 3.7006 -5.9413 -2.1372 40 1 4.6753 -4.6519 -1.3919 41 1 2.4958 -7.4214 1.0315 42 1 2.5448 -7.5970 -0.7391 43 1 5.1819 -7.8082 0.2499 44 1 7.2194 -10.4303 0.5676 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753620286.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:36:33 Heat of formation + Delta-G solvation = -86.624890 kcal Electronic energy + Delta-G solvation = -27378.196772 eV Core-core repulsion = 23001.931884 eV Total energy + Delta-G solvation = -4376.264887 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.01953 -48.03634 -42.51635 -40.29487 -38.13646 -35.96375 -35.46692 -34.14304 -32.30484 -31.64495 -30.88583 -28.47207 -27.64762 -26.91343 -24.86097 -24.15763 -23.17197 -21.50523 -21.30590 -20.67355 -19.36158 -18.92456 -18.52889 -18.23772 -17.49469 -17.11871 -16.69557 -16.52405 -16.30035 -16.04217 -15.47240 -15.32167 -15.26385 -15.02460 -14.86182 -14.58681 -14.43470 -14.37798 -14.05147 -13.86958 -13.56677 -13.52047 -13.50430 -13.30686 -12.96878 -12.93757 -12.78057 -12.22493 -12.16675 -12.12312 -11.94058 -11.86177 -11.66012 -11.60669 -10.92234 -10.85705 -10.44986 -10.12162 -9.67656 -8.96399 -7.93873 -5.21259 0.43038 1.06630 1.12929 1.49409 1.50207 1.58731 2.27328 2.45143 2.58282 2.59012 3.15225 3.24725 3.40121 3.53084 3.65823 3.79186 3.80452 4.00108 4.03259 4.11822 4.23341 4.32192 4.34313 4.39779 4.46242 4.61241 4.75952 4.78336 4.86318 4.94840 4.96283 5.00766 5.10994 5.18507 5.39138 5.46329 5.49661 5.52621 5.56670 5.72507 6.29480 6.45381 6.70102 7.35513 7.36530 8.12259 8.36610 9.29529 Molecular weight = 330.16amu Principal moments of inertia in cm(-1) A = 0.019331 B = 0.001965 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.079102 B =14246.035483 C =15481.850665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.120 3.880 3 N -0.317 5.317 4 N -0.364 5.364 5 C 0.082 3.918 6 C 0.253 3.747 7 F -0.211 7.211 8 F -0.201 7.201 9 C 0.134 3.866 10 C -0.310 4.310 11 C 0.592 3.408 12 O -0.583 6.583 13 N -0.710 5.710 14 C 0.141 3.859 15 C -0.093 4.093 16 H 0.081 0.919 17 C -0.135 4.135 18 C 0.155 3.845 19 N -0.741 5.741 20 C -0.245 4.245 21 H 0.072 0.928 22 C -0.074 4.074 23 N -0.967 5.967 24 Si 0.971 3.029 25 H -0.287 1.287 26 H -0.295 1.295 27 H -0.272 1.272 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.117 0.883 32 H 0.180 0.820 33 H 0.132 0.868 34 H 0.235 0.765 35 H 0.412 0.588 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.041 0.959 39 H 0.049 0.951 40 H 0.080 0.920 41 H 0.018 0.982 42 H 0.020 0.980 43 H 0.377 0.623 44 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.529 27.493 -2.924 27.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.048 4.048 3 N -0.138 5.138 4 N -0.142 5.142 5 C -0.039 4.039 6 C 0.198 3.802 7 F -0.193 7.193 8 F -0.182 7.182 9 C -0.016 4.016 10 C -0.325 4.325 11 C 0.380 3.620 12 O -0.464 6.464 13 N -0.362 5.362 14 C 0.017 3.983 15 C -0.112 4.112 16 H 0.100 0.900 17 C -0.193 4.193 18 C 0.028 3.972 19 N -0.384 5.384 20 C -0.377 4.377 21 H 0.090 0.910 22 C -0.266 4.266 23 N -0.618 5.618 24 Si 0.800 3.200 25 H -0.215 1.215 26 H -0.221 1.221 27 H -0.197 1.197 28 H 0.100 0.900 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.135 0.865 32 H 0.197 0.803 33 H 0.150 0.850 34 H 0.252 0.748 35 H 0.249 0.751 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.060 0.940 39 H 0.068 0.932 40 H 0.099 0.901 41 H 0.036 0.964 42 H 0.038 0.962 43 H 0.210 0.790 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.302 28.571 -2.898 28.810 hybrid contribution 0.657 -1.683 0.180 1.816 sum -1.645 26.887 -2.718 27.074 Atomic orbital electron populations 1.20309 0.85604 1.03809 1.03701 1.22758 0.97908 0.89240 0.94915 1.77352 0.86883 1.22493 1.27113 1.48258 1.05441 1.05166 1.55332 1.23143 0.86745 0.93768 1.00249 1.22262 0.71067 0.84664 1.02173 1.93037 1.54847 1.74437 1.96946 1.93022 1.49387 1.78239 1.97600 1.23778 0.99413 0.84579 0.93875 1.20243 0.93547 0.93386 1.25284 1.17458 0.85189 0.84229 0.75087 1.90733 1.18102 1.84863 1.52659 1.45645 1.10129 1.05206 1.75208 1.21097 0.95844 0.79608 1.01795 1.21322 0.96544 0.93462 0.99854 0.90049 1.21730 0.99719 1.02021 0.95795 1.20745 0.89593 0.89320 0.97575 1.42497 1.04382 1.03105 1.88406 1.19619 0.92782 0.84784 1.40493 0.90968 1.25504 0.95118 1.02231 1.03787 1.69789 0.97420 1.35309 1.59256 0.85180 0.76917 0.80556 0.77357 1.21464 1.22119 1.19707 0.89962 0.90090 0.89932 0.86472 0.80307 0.85043 0.74843 0.75071 0.92284 0.91902 0.93953 0.93223 0.90081 0.96360 0.96198 0.78995 0.93982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.53 9.91 71.24 0.71 -0.82 16 2 C 0.12 2.57 7.26 43.52 0.32 2.88 16 3 N -0.32 -6.36 11.63 -46.68 -0.54 -6.90 16 4 N -0.36 -4.23 3.65 -346.30 -1.26 -5.50 16 5 C 0.08 0.34 6.71 86.38 0.58 0.92 16 6 C 0.25 2.07 5.50 71.98 0.40 2.46 16 7 F -0.21 -3.60 16.55 44.97 0.74 -2.85 16 8 F -0.20 -2.04 17.34 44.97 0.78 -1.26 16 9 C 0.13 1.32 10.94 84.28 0.92 2.24 16 10 C -0.31 -5.85 6.13 -20.15 -0.12 -5.97 16 11 C 0.59 13.94 7.81 86.66 0.68 14.62 16 12 O -0.58 -18.46 14.92 -4.02 -0.06 -18.52 16 13 N -0.71 -13.55 5.27 -466.38 -2.46 -16.01 16 14 C 0.14 3.45 5.06 86.38 0.44 3.89 16 15 C -0.09 -2.53 2.46 -10.79 -0.03 -2.55 16 16 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 17 C -0.14 -3.41 8.94 71.98 0.64 -2.77 16 18 C 0.15 5.87 5.65 86.38 0.49 6.35 16 19 N -0.74 -36.15 5.33 -343.45 -1.83 -37.98 16 20 C -0.24 -13.48 9.99 84.03 0.84 -12.64 16 21 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16 22 C -0.07 -4.18 5.50 84.86 0.47 -3.72 16 23 N -0.97 -57.60 13.06 21.65 0.28 -57.32 16 24 Si 0.97 45.56 29.55 68.60 2.03 47.59 16 25 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 26 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 27 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 28 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 30 H 0.08 1.91 6.56 -2.38 -0.02 1.89 16 31 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.18 -0.93 8.06 -2.39 -0.02 -0.95 16 33 H 0.13 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.24 -0.20 7.46 -2.91 -0.02 -0.22 16 35 H 0.41 4.91 6.58 -92.71 -0.61 4.30 16 36 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.04 1.32 7.18 -2.39 -0.02 1.30 16 39 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.08 1.38 7.18 -2.39 -0.02 1.36 16 41 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.02 0.77 8.14 -2.39 -0.02 0.76 16 43 H 0.38 19.16 6.85 -92.71 -0.64 18.52 16 44 H 0.25 14.52 8.31 -92.70 -0.77 13.75 16 Total: -1.00 -78.98 377.94 3.80 -75.19 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: -0.20 Total: 18.65 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: 6.32 Total: 4.90 kcal Atomic # 7 Polarization: -117.89 SS G_CDS: -5.81 Total: -123.70 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.06 Total: -18.52 kcal Atomic # 9 Polarization: -5.64 SS G_CDS: 1.52 Total: -4.11 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -78.98 3.80 -75.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753620286.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.438 kcal (2) G-P(sol) polarization free energy of solvation -78.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds