Wall clock time and date at job start Sat Apr 11 2020 02:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30444 * 125.99082 * 2 1 4 4 N 1.39936 * 108.90037 * 179.97438 * 3 2 1 5 5 C 1.46505 * 125.75540 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.46782 * 304.97149 * 5 4 3 7 7 F 1.39894 * 109.47241 * 65.00465 * 6 5 4 8 8 F 1.39904 * 109.46505 * 185.00026 * 6 5 4 9 9 C 1.34261 * 108.48993 * 359.74210 * 4 3 2 10 10 C 1.38047 * 107.41393 * 0.39776 * 9 4 3 11 11 C 1.47431 * 126.40969 * 179.86694 * 10 9 4 12 12 O 1.21609 * 119.99549 * 179.69240 * 11 10 9 13 13 N 1.34771 * 120.00397 * 359.69260 * 11 10 9 14 14 C 1.46500 * 120.00026 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.47129 * 179.97438 * 14 13 11 16 16 H 1.08999 * 109.47217 * 305.00580 * 15 14 13 17 17 C 1.53008 * 109.46816 * 65.00299 * 15 14 13 18 18 C 1.52996 * 109.47336 * 184.99981 * 15 14 13 19 19 N 1.46498 * 109.47059 * 175.00083 * 18 15 14 20 20 C 1.36943 * 119.99752 * 179.72430 * 19 18 15 21 21 H 1.08002 * 119.99793 * 0.27665 * 20 19 18 22 22 C 1.38811 * 120.00012 * 180.27737 * 20 19 18 23 23 N 1.31624 * 119.99698 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00072 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47213 * 60.00246 * 24 22 20 26 26 H 1.48502 * 109.47317 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47081 * 299.99875 * 24 22 20 28 28 H 1.08996 * 109.47540 * 270.01118 * 1 2 3 29 29 H 1.09009 * 109.46426 * 30.00761 * 1 2 3 30 30 H 1.08995 * 109.46680 * 150.00500 * 1 2 3 31 31 H 1.09000 * 109.46664 * 64.97244 * 5 4 3 32 32 H 1.09001 * 109.46971 * 184.96935 * 5 4 3 33 33 H 1.08998 * 109.47154 * 304.99957 * 6 5 4 34 34 H 1.07994 * 126.29378 * 180.25014 * 9 4 3 35 35 H 0.97004 * 119.99945 * 359.97438 * 13 11 10 36 36 H 1.09005 * 109.47000 * 60.00500 * 14 13 11 37 37 H 1.08996 * 109.47381 * 300.00104 * 14 13 11 38 38 H 1.09000 * 109.46973 * 59.99593 * 17 15 14 39 39 H 1.08995 * 109.47053 * 180.02562 * 17 15 14 40 40 H 1.09001 * 109.46930 * 299.99894 * 17 15 14 41 41 H 1.09004 * 109.47066 * 55.00351 * 18 15 14 42 42 H 1.08994 * 109.46974 * 295.00498 * 18 15 14 43 43 H 0.97001 * 120.00384 * 0.02562 * 19 18 15 44 44 H 0.96999 * 119.99739 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0554 0.0000 4 7 3.6111 0.6442 0.0006 5 6 4.7788 1.5290 0.0013 6 6 4.6864 2.4962 -1.1806 7 9 3.5833 3.3391 -1.0084 8 9 5.8541 3.2639 -1.2471 9 6 3.6439 -0.6980 0.0067 10 6 2.3372 -1.1432 0.0008 11 6 1.8916 -2.5485 0.0016 12 8 0.7038 -2.8097 0.0016 13 7 2.8003 -3.5438 0.0023 14 6 2.3574 -4.9402 0.0036 15 6 3.5782 -5.8625 0.0035 16 1 4.2230 -5.6118 -0.8388 17 6 4.3534 -5.6825 1.3103 18 6 3.1189 -7.3166 -0.1209 19 7 4.2891 -8.1897 -0.2410 20 6 4.1236 -9.5440 -0.3593 21 1 3.1303 -9.9678 -0.3685 22 6 5.2326 -10.3719 -0.4674 23 7 6.4431 -9.8553 -0.4556 24 14 5.0068 -12.2190 -0.6295 25 1 4.2171 -12.5159 -1.8516 26 1 6.3362 -12.8735 -0.7275 27 1 4.2877 -12.7363 0.5624 28 1 -0.3634 0.0002 1.0276 29 1 -0.3632 0.8900 -0.5140 30 1 -0.3632 -0.8900 -0.5137 31 1 4.8053 2.0948 0.9326 32 1 5.6868 0.9325 -0.0874 33 1 4.5705 1.9303 -2.1050 34 1 4.5297 -1.3158 0.0125 35 1 3.7478 -3.3354 0.0019 36 1 1.7576 -5.1319 -0.8862 37 1 1.7580 -5.1304 0.8938 38 1 3.7086 -5.9332 2.1527 39 1 5.2233 -6.3392 1.3101 40 1 4.6806 -4.6466 1.3989 41 1 2.4921 -7.4252 -1.0060 42 1 2.5478 -7.5942 0.7650 43 1 5.1813 -7.8091 -0.2324 44 1 7.2180 -10.4338 -0.5315 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753620287.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:36:37 Heat of formation + Delta-G solvation = -61.766972 kcal Electronic energy + Delta-G solvation = -27372.916058 eV Core-core repulsion = 22997.729091 eV Total energy + Delta-G solvation = -4375.186967 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.161 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.54858 -47.53378 -41.85802 -39.32965 -36.81914 -34.98462 -34.36808 -32.65916 -31.37039 -30.48877 -29.82800 -27.77855 -26.48482 -25.36653 -24.07170 -22.90821 -22.21757 -20.55090 -20.38454 -19.73092 -18.57031 -18.06487 -17.75929 -17.12171 -16.78910 -16.13914 -15.85550 -15.70131 -15.11190 -14.77786 -14.49780 -14.42148 -14.17841 -13.96272 -13.88311 -13.82739 -13.57903 -13.21951 -13.05246 -12.96824 -12.82176 -12.63698 -12.31480 -12.27365 -12.06208 -11.77555 -11.19146 -11.08068 -10.91947 -10.71686 -10.59229 -10.44777 -10.12110 -9.88560 -9.78961 -9.67477 -9.22123 -8.91130 -8.88414 -6.94204 -5.79011 -3.07255 1.02292 1.60844 1.85814 2.94309 3.20177 3.32655 3.43440 3.47738 3.48758 3.50770 3.56747 3.93728 4.12914 4.27816 4.48205 4.57871 4.59729 4.78534 4.95199 5.06791 5.13104 5.20531 5.35762 5.50261 5.56151 5.63473 5.73129 5.79250 5.94928 5.98990 6.08721 6.19402 6.20578 6.24151 6.37363 6.49420 6.62455 6.75328 6.84988 7.14316 7.51539 7.68610 8.23610 8.40409 9.51588 10.08767 10.43445 11.43988 Molecular weight = 330.16amu Principal moments of inertia in cm(-1) A = 0.018647 B = 0.001971 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.184175 B =14199.589349 C =15420.045635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.137 3.863 3 N -0.289 5.289 4 N -0.370 5.370 5 C 0.085 3.915 6 C 0.258 3.742 7 F -0.185 7.185 8 F -0.196 7.196 9 C 0.102 3.898 10 C -0.277 4.277 11 C 0.591 3.409 12 O -0.540 6.540 13 N -0.723 5.723 14 C 0.128 3.872 15 C -0.110 4.110 16 H 0.076 0.924 17 C -0.141 4.141 18 C 0.160 3.840 19 N -0.731 5.731 20 C -0.239 4.239 21 H 0.070 0.930 22 C -0.015 4.015 23 N -0.936 5.936 24 Si 0.908 3.092 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.098 0.902 31 H 0.113 0.887 32 H 0.132 0.868 33 H 0.115 0.885 34 H 0.187 0.813 35 H 0.395 0.605 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.053 0.947 39 H 0.069 0.931 40 H 0.040 0.960 41 H 0.022 0.978 42 H 0.023 0.977 43 H 0.384 0.616 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.862 26.824 0.849 26.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.032 4.032 3 N -0.109 5.109 4 N -0.149 5.149 5 C -0.038 4.038 6 C 0.203 3.797 7 F -0.167 7.167 8 F -0.177 7.177 9 C -0.047 4.047 10 C -0.292 4.292 11 C 0.378 3.622 12 O -0.418 6.418 13 N -0.374 5.374 14 C 0.005 3.995 15 C -0.129 4.129 16 H 0.094 0.906 17 C -0.198 4.198 18 C 0.032 3.968 19 N -0.375 5.375 20 C -0.370 4.370 21 H 0.088 0.912 22 C -0.211 4.211 23 N -0.584 5.584 24 Si 0.739 3.261 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 H 0.100 0.900 29 H 0.091 0.909 30 H 0.116 0.884 31 H 0.131 0.869 32 H 0.150 0.850 33 H 0.132 0.868 34 H 0.204 0.796 35 H 0.230 0.770 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.072 0.928 39 H 0.088 0.912 40 H 0.059 0.941 41 H 0.039 0.961 42 H 0.040 0.960 43 H 0.218 0.782 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.622 27.855 0.837 28.102 hybrid contribution 1.054 -1.579 -0.021 1.899 sum -2.568 26.276 0.816 26.413 Atomic orbital electron populations 1.20381 0.85323 1.04244 1.03761 1.22605 0.97488 0.88591 0.94477 1.77403 0.85179 1.22150 1.26206 1.48019 1.05700 1.04378 1.56771 1.22778 0.86618 0.93646 1.00769 1.21947 0.72158 0.84984 1.00574 1.93085 1.53371 1.73453 1.96749 1.93037 1.49227 1.77980 1.97496 1.23169 0.99304 0.84638 0.97606 1.20375 0.91935 0.94846 1.22014 1.17178 0.85710 0.83305 0.76049 1.90756 1.16251 1.84175 1.50649 1.45893 1.09351 1.06540 1.75639 1.21414 0.96938 0.78628 1.02528 1.21553 0.95954 0.96391 0.99045 0.90598 1.21790 1.01161 1.00161 0.96725 1.20579 0.91178 0.86990 0.98068 1.42330 1.03237 1.03293 1.88680 1.19199 0.92701 0.83049 1.42029 0.91185 1.24734 0.95232 0.98070 1.03020 1.69645 0.96909 1.34234 1.57647 0.86250 0.76512 0.85379 0.77948 1.21252 1.21721 1.21260 0.90034 0.90946 0.88357 0.86858 0.84973 0.86762 0.79632 0.77040 0.91233 0.91227 0.92760 0.91189 0.94068 0.96068 0.95961 0.78245 0.93496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 9.92 36.01 0.36 -0.41 16 2 C 0.14 1.50 7.26 -82.02 -0.60 0.91 16 3 N -0.29 -3.07 11.63 33.89 0.39 -2.68 16 4 N -0.37 -2.73 3.65 -60.81 -0.22 -2.96 16 5 C 0.08 0.33 6.71 -4.04 -0.03 0.31 16 6 C 0.26 1.38 5.51 37.16 0.20 1.58 16 7 F -0.19 -1.67 16.55 2.25 0.04 -1.63 16 8 F -0.20 -1.22 17.34 2.25 0.04 -1.18 16 9 C 0.10 0.71 10.95 -16.56 -0.18 0.53 16 10 C -0.28 -2.87 6.13 -105.07 -0.64 -3.51 16 11 C 0.59 7.33 7.81 -12.52 -0.10 7.23 16 12 O -0.54 -8.48 14.92 5.27 0.08 -8.40 16 13 N -0.72 -7.80 5.27 -61.38 -0.32 -8.12 16 14 C 0.13 1.66 5.06 -4.04 -0.02 1.64 16 15 C -0.11 -1.59 2.46 -90.62 -0.22 -1.81 16 16 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 17 C -0.14 -1.94 8.94 37.16 0.33 -1.60 16 18 C 0.16 3.07 5.65 -4.04 -0.02 3.05 16 19 N -0.73 -17.87 5.33 -59.91 -0.32 -18.19 16 20 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16 21 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 22 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 23 N -0.94 -27.75 13.06 55.49 0.72 -27.02 16 24 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 27 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 28 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 30 H 0.10 1.07 6.55 -51.93 -0.34 0.73 16 31 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.13 0.04 8.06 -51.93 -0.42 -0.38 16 33 H 0.12 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.19 0.52 7.46 -52.49 -0.39 0.13 16 35 H 0.40 3.18 6.58 -40.82 -0.27 2.91 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 1.14 7.18 -51.93 -0.37 0.77 16 40 H 0.04 0.43 7.18 -51.93 -0.37 0.06 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.38 9.72 6.85 -40.82 -0.28 9.44 16 44 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 377.93 15.07 5.70 5.70 Total: -1.00 -35.36 377.93 -6.30 -41.66 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -6.22 Total: 4.99 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -1.16 Total: 0.66 kcal Atomic # 7 Polarization: -59.22 SS G_CDS: 0.25 Total: -58.96 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: 0.08 Total: -8.40 kcal Atomic # 9 Polarization: -2.88 SS G_CDS: 0.08 Total: -2.81 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.36 -6.30 -41.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753620287.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.106 kcal (2) G-P(sol) polarization free energy of solvation -35.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds