Wall clock time and date at job start Sat Apr 11 2020 02:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.46960 * 2 1 4 4 C 1.50703 * 109.46983 * 240.00367 * 2 1 3 5 5 H 1.08002 * 120.00020 * 241.34594 * 4 2 1 6 6 C 1.37881 * 120.00132 * 61.34770 * 4 2 1 7 7 N 1.31512 * 119.99868 * 193.97673 * 6 4 2 8 8 Si 1.86800 * 120.00010 * 13.97435 * 6 4 2 9 9 H 1.48499 * 109.47164 * 84.54917 * 8 6 4 10 10 H 1.48498 * 109.47041 * 204.55364 * 8 6 4 11 11 H 1.48501 * 109.47157 * 324.55008 * 8 6 4 12 12 C 1.52997 * 109.47458 * 120.00463 * 2 1 3 13 13 N 1.46506 * 109.46665 * 299.99885 * 12 2 1 14 14 C 1.34774 * 119.99572 * 179.97438 * 13 12 2 15 15 O 1.21348 * 120.00139 * 0.02562 * 14 13 12 16 16 C 1.49447 * 119.99761 * 180.02562 * 14 13 12 17 17 O 1.21348 * 120.00100 * 359.97438 * 16 14 13 18 18 N 1.34780 * 120.00185 * 180.02562 * 16 14 13 19 19 C 1.47809 * 134.58148 * 359.94599 * 18 16 14 20 20 C 1.53942 * 86.16282 * 204.58246 * 19 18 16 21 21 C 1.47585 * 134.49576 * 180.02562 * 18 16 14 22 22 H 1.08999 * 113.76679 * 269.77715 * 21 18 16 23 23 C 1.50701 * 113.76577 * 41.06366 * 21 18 16 24 24 C 1.38234 * 119.99432 * 198.65681 * 23 21 18 25 25 C 1.38237 * 119.99854 * 179.97438 * 24 23 21 26 26 C 1.38237 * 119.99778 * 359.97088 * 25 24 23 27 27 C 1.38238 * 120.00094 * 0.02562 * 26 25 24 28 28 C 1.38229 * 119.99804 * 0.08983 * 27 26 25 29 29 H 1.08998 * 109.47352 * 309.36698 * 1 2 3 30 30 H 1.09003 * 109.47211 * 69.36839 * 1 2 3 31 31 H 1.09000 * 109.47118 * 189.36502 * 1 2 3 32 32 H 1.09001 * 109.47367 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47727 * 300.00213 * 3 2 1 34 34 H 1.09006 * 109.47201 * 60.00559 * 3 2 1 35 35 H 0.97000 * 119.99991 * 179.97438 * 7 6 4 36 36 H 1.08998 * 109.47591 * 180.02562 * 12 2 1 37 37 H 1.09002 * 109.46899 * 59.99874 * 12 2 1 38 38 H 0.96995 * 120.00140 * 359.97438 * 13 12 2 39 39 H 1.09007 * 113.66868 * 90.26782 * 19 18 16 40 40 H 1.09006 * 113.83819 * 318.91165 * 19 18 16 41 41 H 1.08998 * 113.73980 * 222.14209 * 20 19 18 42 42 H 1.09000 * 113.74649 * 90.82976 * 20 19 18 43 43 H 1.08001 * 120.00239 * 359.97438 * 24 23 21 44 44 H 1.07992 * 119.99994 * 180.02562 * 25 24 23 45 45 H 1.07996 * 119.99840 * 179.72507 * 26 25 24 46 46 H 1.08004 * 119.99933 * 179.97438 * 27 26 25 47 47 H 1.08003 * 120.00056 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6352 -1.6010 -1.1317 6 6 1.7223 -0.2232 -2.4826 7 7 1.9157 -0.9724 -3.5461 8 14 1.0275 1.5008 -2.6684 9 1 2.1416 2.4818 -2.7083 10 1 0.2468 1.5867 -3.9287 11 1 0.1417 1.8044 -1.5158 12 6 2.0401 -0.7213 1.2491 13 7 1.5517 -0.0307 2.4454 14 6 1.8770 -0.4915 3.6694 15 8 2.5746 -1.4782 3.7807 16 6 1.3784 0.2126 4.8897 17 8 0.6811 1.1995 4.7784 18 7 1.7040 -0.2479 6.1138 19 6 2.5063 -1.3834 6.6156 20 6 1.6551 -1.2855 7.8945 21 6 1.4011 0.1788 7.4938 22 1 2.1271 0.8795 7.9062 23 6 -0.0248 0.6243 7.6926 24 6 -0.3607 1.3981 8.7876 25 6 -1.6686 1.8072 8.9698 26 6 -2.6403 1.4429 8.0565 27 6 -2.3042 0.6691 6.9614 28 6 -0.9969 0.2580 6.7806 29 1 -0.3634 0.6518 0.7945 30 1 -0.3634 0.3621 -0.9618 31 1 -0.3633 -1.0140 0.1672 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.6973 -0.6299 -4.4269 36 1 3.1301 -0.7209 1.2494 37 1 1.6767 -1.7490 1.2490 38 1 0.9944 0.7581 2.3564 39 1 3.5583 -1.1422 6.7683 40 1 2.3573 -2.3084 6.0584 41 1 2.2303 -1.3955 8.8139 42 1 0.7600 -1.9072 7.8748 43 1 0.3985 1.6832 9.5008 44 1 -1.9310 2.4122 9.8250 45 1 -3.6628 1.7588 8.2012 46 1 -3.0635 0.3841 6.2481 47 1 -0.7344 -0.3469 5.9253 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000422492423.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:34:54 Heat of formation + Delta-G solvation = 14.895196 kcal Electronic energy + Delta-G solvation = -28392.952408 eV Core-core repulsion = 24543.026541 eV Total energy + Delta-G solvation = -3849.925867 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.15275 -39.61336 -38.49422 -37.63466 -36.78521 -33.41116 -31.79583 -31.51439 -31.05265 -30.01316 -26.80075 -26.38352 -26.11151 -25.07356 -23.68911 -22.85065 -22.12293 -21.05683 -19.56877 -19.00020 -17.88110 -17.42599 -16.94567 -16.14095 -15.95688 -15.60386 -15.53594 -15.04391 -14.86793 -14.64048 -14.31544 -13.97023 -13.64026 -13.50188 -13.16349 -13.07847 -12.91017 -12.88035 -12.64347 -12.53138 -12.24445 -12.08818 -12.04258 -11.74328 -11.41725 -11.37143 -11.21066 -10.93713 -10.49255 -10.33653 -10.18957 -10.08641 -9.39627 -9.15861 -9.13749 -9.01386 -8.82949 -8.71812 -8.69945 -8.48177 -6.17203 -4.14989 1.07853 1.24918 1.59525 2.25483 3.24486 3.32494 3.38363 3.38725 3.45417 3.66439 4.09244 4.34450 4.36989 4.54901 4.60902 4.75081 4.82331 4.89143 4.93559 5.07702 5.13753 5.23701 5.31126 5.33137 5.45421 5.58427 5.68829 5.75393 5.80782 5.87299 5.97833 6.03371 6.24064 6.33569 6.34354 6.39844 6.41523 6.47905 6.56713 6.60946 6.67236 6.80068 6.89573 7.16578 7.27682 7.38383 7.46411 7.68748 7.88200 8.25995 8.42011 8.87057 9.46671 10.95659 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.018696 B = 0.002859 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.298820 B = 9792.810951 C =10764.893117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.029 3.971 3 C -0.150 4.150 4 C -0.514 4.514 5 H 0.077 0.923 6 C 0.077 3.923 7 N -0.890 5.890 8 Si 0.884 3.116 9 H -0.285 1.285 10 H -0.305 1.305 11 H -0.248 1.248 12 C 0.140 3.860 13 N -0.688 5.688 14 C 0.500 3.500 15 O -0.527 6.527 16 C 0.525 3.475 17 O -0.513 6.513 18 N -0.619 5.619 19 C 0.112 3.888 20 C -0.146 4.146 21 C 0.177 3.823 22 H 0.106 0.894 23 C -0.094 4.094 24 C -0.107 4.107 25 C -0.125 4.125 26 C -0.117 4.117 27 C -0.120 4.120 28 C -0.078 4.078 29 H 0.024 0.976 30 H 0.058 0.942 31 H 0.047 0.953 32 H 0.054 0.946 33 H 0.043 0.957 34 H 0.031 0.969 35 H 0.265 0.735 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.409 0.591 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.092 0.908 42 H 0.096 0.904 43 H 0.122 0.878 44 H 0.121 0.879 45 H 0.120 0.880 46 H 0.121 0.879 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.172 2.761 27.092 27.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.028 3.972 3 C -0.207 4.207 4 C -0.552 4.552 5 H 0.095 0.905 6 C -0.126 4.126 7 N -0.527 5.527 8 Si 0.716 3.284 9 H -0.213 1.213 10 H -0.233 1.233 11 H -0.174 1.174 12 C 0.018 3.982 13 N -0.340 5.340 14 C 0.280 3.720 15 O -0.404 6.404 16 C 0.309 3.691 17 O -0.388 6.388 18 N -0.356 5.356 19 C -0.010 4.010 20 C -0.184 4.184 21 C 0.074 3.926 22 H 0.124 0.876 23 C -0.094 4.094 24 C -0.126 4.126 25 C -0.143 4.143 26 C -0.135 4.135 27 C -0.138 4.138 28 C -0.096 4.096 29 H 0.043 0.957 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.050 0.950 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.245 0.755 39 H 0.109 0.891 40 H 0.116 0.884 41 H 0.110 0.890 42 H 0.114 0.886 43 H 0.140 0.860 44 H 0.139 0.861 45 H 0.138 0.862 46 H 0.139 0.861 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.097 2.624 26.637 27.077 hybrid contribution -0.507 1.487 -0.517 1.654 sum -4.604 4.111 26.120 26.839 Atomic orbital electron populations 1.22317 0.97686 0.99947 1.00242 1.18733 0.92682 0.92339 0.93484 1.22384 1.01226 0.98253 0.98867 1.20678 1.34276 1.12365 0.87894 0.90454 1.24954 0.94583 0.97298 0.95756 1.69944 1.48042 1.35921 0.98752 0.87313 0.79449 0.85502 0.76103 1.21280 1.23322 1.17424 1.21714 0.98945 0.96000 0.81544 1.46205 1.51020 1.31574 1.05239 1.19914 0.82323 0.85158 0.84618 1.90714 1.37411 1.25631 1.86650 1.20195 0.81252 0.84157 0.83467 1.90789 1.36881 1.25195 1.85964 1.49978 1.50924 1.31194 1.03553 1.23295 0.95807 0.90405 0.91540 1.23692 1.01340 0.94784 0.98552 1.21781 0.93715 0.97212 0.79853 0.87605 1.19684 0.94305 0.99273 0.96163 1.20870 0.96716 0.97630 0.97369 1.21063 0.93124 1.00565 0.99581 1.21171 0.99398 0.98182 0.94763 1.21156 0.96413 0.98406 0.97822 1.20930 0.92508 0.98502 0.97704 0.95728 0.92352 0.93340 0.92701 0.93873 0.94985 0.92497 0.91344 0.91219 0.75462 0.89117 0.88367 0.88971 0.88559 0.86007 0.86066 0.86175 0.86060 0.86625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 7.53 37.16 0.28 -2.73 16 2 C 0.03 0.63 0.50 -155.66 -0.08 0.56 16 3 C -0.15 -3.14 7.52 37.16 0.28 -2.86 16 4 C -0.51 -13.72 8.62 -34.44 -0.30 -14.02 16 5 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16 6 C 0.08 2.14 5.32 -17.82 -0.09 2.04 16 7 N -0.89 -26.51 13.96 55.43 0.77 -25.74 16 8 Si 0.88 21.26 22.79 -169.99 -3.87 17.39 16 9 H -0.29 -6.84 7.10 56.52 0.40 -6.44 16 10 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 11 H -0.25 -5.50 4.65 56.52 0.26 -5.24 16 12 C 0.14 2.77 4.49 -4.04 -0.02 2.75 16 13 N -0.69 -12.06 5.00 -60.73 -0.30 -12.36 16 14 C 0.50 8.48 7.89 -11.59 -0.09 8.39 16 15 O -0.53 -9.63 15.10 5.50 0.08 -9.55 16 16 C 0.52 8.02 6.69 -11.58 -0.08 7.94 16 17 O -0.51 -8.78 15.18 5.50 0.08 -8.70 16 18 N -0.62 -7.42 3.06 -171.99 -0.53 -7.94 16 19 C 0.11 1.00 7.75 -2.85 -0.02 0.97 16 20 C -0.15 -0.97 7.85 -25.80 -0.20 -1.17 16 21 C 0.18 1.62 4.46 -68.02 -0.30 1.32 16 22 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 23 C -0.09 -0.99 5.09 -104.63 -0.53 -1.52 16 24 C -0.11 -0.96 9.74 -39.58 -0.39 -1.35 16 25 C -0.13 -1.09 10.05 -39.58 -0.40 -1.49 16 26 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 27 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16 28 C -0.08 -0.95 7.92 -39.59 -0.31 -1.27 16 29 H 0.02 0.44 7.13 -51.93 -0.37 0.07 16 30 H 0.06 1.29 4.30 -51.93 -0.22 1.06 16 31 H 0.05 0.98 8.12 -51.93 -0.42 0.56 16 32 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.04 0.95 2.25 -51.93 -0.12 0.83 16 34 H 0.03 0.58 6.86 -51.93 -0.36 0.22 16 35 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 38 H 0.41 6.93 5.73 -40.82 -0.23 6.70 16 39 H 0.09 0.68 8.14 -51.92 -0.42 0.26 16 40 H 0.10 0.98 7.43 -51.93 -0.39 0.59 16 41 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.10 0.67 8.09 -51.93 -0.42 0.25 16 43 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 44 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 45 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 46 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 47 H 0.12 1.57 6.05 -52.48 -0.32 1.25 16 LS Contribution 368.79 15.07 5.56 5.56 Total: -1.00 -32.07 368.79 -8.02 -40.10 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -6.77 Total: 6.90 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -3.05 Total: -5.65 kcal Atomic # 7 Polarization: -45.99 SS G_CDS: -0.06 Total: -46.04 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: 0.17 Total: -18.25 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -3.87 Total: 17.39 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.07 -8.02 -40.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422492423.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.991 kcal (2) G-P(sol) polarization free energy of solvation -32.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds