Wall clock time and date at job start Sat Apr 11 2020 02:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.46941 * 2 1 4 4 C 1.52995 * 109.47328 * 120.00627 * 2 1 3 5 5 H 1.08998 * 109.99979 * 179.73567 * 4 2 1 6 6 C 1.54311 * 109.77225 * 300.89173 * 4 2 1 7 7 C 1.55165 * 102.86531 * 141.88757 * 6 4 2 8 8 C 1.54911 * 101.57576 * 324.30208 * 7 6 4 9 9 N 1.47022 * 109.88200 * 58.63917 * 4 2 1 10 10 C 1.34775 * 125.64924 * 61.68117 * 9 4 2 11 11 O 1.21359 * 120.00200 * 4.89131 * 10 9 4 12 12 C 1.49361 * 120.00011 * 184.88947 * 10 9 4 13 13 O 1.21374 * 119.99716 * 359.97438 * 12 10 9 14 14 N 1.34775 * 120.00011 * 179.97438 * 12 10 9 15 15 C 1.39736 * 120.00120 * 175.45958 * 14 12 10 16 16 C 1.39348 * 119.95326 * 215.24687 * 15 14 12 17 17 C 1.38473 * 120.42070 * 180.02562 * 16 15 14 18 18 C 1.37688 * 120.33222 * 359.97384 * 17 16 15 19 19 C 1.40751 * 119.89699 * 0.02562 * 18 17 16 20 20 C 1.41406 * 120.20847 * 179.97438 * 19 18 17 21 21 H 1.07994 * 120.00165 * 325.36702 * 20 19 18 22 22 C 1.39935 * 119.99932 * 145.08980 * 20 19 18 23 23 N 1.30831 * 119.99980 * 4.29093 * 22 20 19 24 24 Si 1.86797 * 120.00210 * 184.28824 * 22 20 19 25 25 H 1.48501 * 109.47110 * 89.99976 * 24 22 20 26 26 H 1.48499 * 109.47318 * 210.00059 * 24 22 20 27 27 H 1.48506 * 109.47111 * 330.00079 * 24 22 20 28 28 C 1.38307 * 119.95324 * 35.49809 * 15 14 12 29 29 H 1.08998 * 109.47418 * 66.19784 * 1 2 3 30 30 H 1.09002 * 109.47025 * 186.19671 * 1 2 3 31 31 H 1.08997 * 109.46809 * 306.19179 * 1 2 3 32 32 H 1.09002 * 109.46458 * 240.00308 * 2 1 3 33 33 H 1.09003 * 109.46807 * 180.02562 * 3 2 1 34 34 H 1.08993 * 109.47466 * 300.00158 * 3 2 1 35 35 H 1.09003 * 109.46769 * 60.00801 * 3 2 1 36 36 H 1.08997 * 110.92643 * 23.46989 * 6 4 2 37 37 H 1.09004 * 110.58915 * 260.14301 * 6 4 2 38 38 H 1.09002 * 111.00062 * 206.23145 * 7 6 4 39 39 H 1.08993 * 111.03426 * 82.39230 * 7 6 4 40 40 H 1.09005 * 110.36529 * 278.16510 * 8 7 6 41 41 H 1.09002 * 110.36089 * 155.85248 * 8 7 6 42 42 H 0.97004 * 120.00151 * 355.46010 * 14 12 10 43 43 H 1.07994 * 119.78587 * 359.97120 * 16 15 14 44 44 H 1.08006 * 119.82919 * 179.97438 * 17 16 15 45 45 H 1.08006 * 120.05410 * 180.02562 * 18 17 16 46 46 H 0.97005 * 120.00048 * 180.02562 * 23 22 20 47 47 H 1.07997 * 120.16121 * 0.02579 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 1.2491 5 1 3.1300 -0.7305 1.2554 6 6 1.5112 -0.0127 2.5137 7 6 1.2057 -1.1955 3.4704 8 6 0.6977 -2.2730 2.4801 9 7 1.5284 -2.0994 1.2746 10 6 1.7816 -3.0486 0.3519 11 8 2.5574 -2.8229 -0.5537 12 6 1.1075 -4.3782 0.4438 13 8 0.3321 -4.6041 1.3498 14 7 1.3604 -5.3272 -0.4792 15 6 0.8044 -6.6017 -0.3413 16 6 1.5261 -7.7231 -0.7455 17 6 0.9843 -8.9906 -0.6139 18 6 -0.2744 -9.1569 -0.0811 19 6 -1.0155 -8.0337 0.3316 20 6 -2.3090 -8.1967 0.8792 21 1 -2.9548 -8.9816 0.5143 22 6 -2.7501 -7.3447 1.8978 23 7 -1.9998 -6.3456 2.2856 24 14 -4.4102 -7.6338 2.7039 25 1 -4.2432 -8.5365 3.8712 26 1 -4.9728 -6.3366 3.1577 27 1 -5.3345 -8.2583 1.7235 28 6 -0.4636 -6.7481 0.1913 29 1 -0.3634 0.4147 -0.9402 30 1 -0.3633 -1.0217 0.1109 31 1 -0.3633 0.6068 0.8294 32 1 1.8933 -0.5138 -0.8901 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9562 0.8901 36 1 0.6039 0.5499 2.2940 37 1 2.2766 0.6378 2.9370 38 1 0.4300 -0.9274 4.1878 39 1 2.1090 -1.5289 3.9811 40 1 -0.3533 -2.1058 2.2440 41 1 0.8395 -3.2695 2.8984 42 1 1.9283 -5.1255 -1.2393 43 1 2.5140 -7.6028 -1.1650 44 1 1.5520 -9.8531 -0.9306 45 1 -0.6925 -10.1476 0.0199 46 1 -2.3054 -5.7551 2.9920 47 1 -1.0257 -5.8794 0.5008 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453611368.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:35:38 Heat of formation + Delta-G solvation = -43.483426 kcal Electronic energy + Delta-G solvation = -29070.168825 eV Core-core repulsion = 25217.711470 eV Total energy + Delta-G solvation = -3852.457354 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.77892 -39.25064 -37.67041 -36.96457 -34.79106 -34.19586 -33.10116 -31.58404 -29.52310 -28.60660 -28.18296 -27.24764 -25.35031 -25.14233 -22.90458 -22.08416 -21.28900 -20.53569 -19.59027 -18.75956 -17.77348 -16.93156 -16.82826 -16.21356 -15.63336 -15.38129 -14.96702 -14.76164 -14.54838 -14.29612 -13.77432 -13.61927 -13.47448 -13.29565 -13.00304 -12.83922 -12.70399 -12.34117 -12.28722 -12.11451 -11.92576 -11.63292 -11.49297 -11.39619 -11.13437 -11.09695 -11.04474 -10.89016 -10.75782 -10.68846 -10.52272 -10.39057 -9.93797 -9.76321 -9.18052 -9.09836 -8.68728 -8.64618 -7.24892 -6.98782 -6.43317 -4.32217 1.78931 2.55746 2.82102 3.03020 3.13362 3.17267 3.22734 3.74008 3.87372 4.04154 4.42820 4.47676 4.65475 4.77343 4.90156 4.90732 4.97875 5.01100 5.25406 5.37290 5.44214 5.50045 5.61029 5.66190 5.72163 5.78753 5.80677 5.93216 5.97990 6.00399 6.08535 6.14279 6.19108 6.26768 6.39596 6.42203 6.68452 6.93582 6.97624 7.15055 7.31630 7.39151 7.52486 7.78313 7.84810 7.93066 8.11661 8.24043 8.42633 8.54934 8.80703 9.00184 9.01131 10.39866 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.013022 B = 0.003849 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.631471 B = 7272.422623 C = 8747.337369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.110 4.110 3 C -0.142 4.142 4 C 0.141 3.859 5 H 0.077 0.923 6 C -0.131 4.131 7 C -0.137 4.137 8 C 0.101 3.899 9 N -0.587 5.587 10 C 0.525 3.475 11 O -0.531 6.531 12 C 0.484 3.516 13 O -0.456 6.456 14 N -0.640 5.640 15 C 0.129 3.871 16 C -0.250 4.250 17 C -0.088 4.088 18 C -0.225 4.225 19 C 0.113 3.887 20 C -0.468 4.468 21 H 0.075 0.925 22 C 0.069 3.931 23 N -0.779 5.779 24 Si 0.909 3.091 25 H -0.272 1.272 26 H -0.279 1.279 27 H -0.265 1.265 28 C -0.143 4.143 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.082 0.918 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.101 0.899 42 H 0.406 0.594 43 H 0.091 0.909 44 H 0.092 0.908 45 H 0.094 0.906 46 H 0.277 0.723 47 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.482 14.806 1.091 15.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.129 4.129 3 C -0.200 4.200 4 C 0.038 3.962 5 H 0.095 0.905 6 C -0.169 4.169 7 C -0.175 4.175 8 C -0.021 4.021 9 N -0.321 5.321 10 C 0.309 3.691 11 O -0.408 6.408 12 C 0.264 3.736 13 O -0.327 6.327 14 N -0.286 5.286 15 C 0.038 3.962 16 C -0.271 4.271 17 C -0.107 4.107 18 C -0.245 4.245 19 C 0.110 3.890 20 C -0.499 4.499 21 H 0.093 0.907 22 C -0.149 4.149 23 N -0.404 5.404 24 Si 0.734 3.266 25 H -0.197 1.197 26 H -0.204 1.204 27 H -0.189 1.189 28 C -0.164 4.164 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.101 0.899 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.119 0.881 42 H 0.241 0.759 43 H 0.109 0.891 44 H 0.111 0.889 45 H 0.112 0.888 46 H 0.088 0.912 47 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 5.351 14.937 1.416 15.929 hybrid contribution -0.302 -0.076 0.073 0.320 sum 5.048 14.861 1.489 15.765 Atomic orbital electron populations 1.21863 0.94839 1.02270 1.01397 1.21449 0.96477 0.96256 0.98710 1.21787 1.00959 0.95354 1.01879 1.21703 0.98468 0.80529 0.95456 0.90491 1.22810 1.02175 0.97662 0.94207 1.22864 1.02073 0.95141 0.97417 1.22619 0.94783 1.01129 0.83577 1.48276 1.49359 1.10609 1.23834 1.20160 0.82248 0.85093 0.81644 1.90698 1.35342 1.80835 1.33883 1.19955 0.84299 0.85184 0.84149 1.90975 1.31318 1.78671 1.31708 1.43016 1.49727 1.10543 1.25345 1.17712 0.93782 0.81483 1.03272 1.20131 0.99759 0.91925 1.15320 1.20315 0.95742 0.94856 0.99791 1.21155 0.95459 0.97656 1.10186 1.17550 0.92883 0.90125 0.88399 1.19456 0.99464 1.13873 1.17074 0.90710 1.25904 0.98177 0.93936 0.96882 1.69860 1.35380 1.11525 1.23604 0.86313 0.82122 0.78337 0.79834 1.19699 1.20429 1.18877 1.21823 0.92872 0.99767 1.01962 0.92828 0.92397 0.92463 0.89924 0.92659 0.92500 0.92456 0.89771 0.90204 0.89702 0.90718 0.90670 0.88071 0.75860 0.89091 0.88942 0.88817 0.91172 0.83164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 8.72 37.16 0.32 -1.28 16 2 C -0.11 -1.21 2.65 -90.62 -0.24 -1.45 16 3 C -0.14 -1.19 8.97 37.15 0.33 -0.85 16 4 C 0.14 1.61 2.65 -66.96 -0.18 1.43 16 5 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 6 C -0.13 -1.12 5.18 -24.90 -0.13 -1.25 16 7 C -0.14 -1.31 7.08 -24.58 -0.17 -1.48 16 8 C 0.10 1.35 5.83 -2.53 -0.01 1.34 16 9 N -0.59 -8.42 2.17 -163.56 -0.35 -8.78 16 10 C 0.52 9.10 7.66 -11.63 -0.09 9.01 16 11 O -0.53 -9.69 15.71 5.49 0.09 -9.60 16 12 C 0.48 9.71 7.69 -11.63 -0.09 9.62 16 13 O -0.46 -10.23 11.30 5.48 0.06 -10.16 16 14 N -0.64 -12.94 5.32 -10.34 -0.05 -13.00 16 15 C 0.13 3.03 6.28 -83.82 -0.53 2.51 16 16 C -0.25 -5.55 9.97 -39.08 -0.39 -5.94 16 17 C -0.09 -1.97 10.01 -39.70 -0.40 -2.37 16 18 C -0.22 -5.52 9.79 -38.83 -0.38 -5.90 16 19 C 0.11 3.05 5.54 -106.85 -0.59 2.46 16 20 C -0.47 -12.55 9.04 -37.74 -0.34 -12.90 16 21 H 0.07 1.93 7.85 -52.49 -0.41 1.52 16 22 C 0.07 1.75 5.42 -17.34 -0.09 1.66 16 23 N -0.78 -20.45 10.57 55.55 0.59 -19.86 16 24 Si 0.91 19.15 29.56 -169.99 -5.03 14.12 16 25 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 26 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 27 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 28 C -0.14 -3.77 7.30 -38.66 -0.28 -4.05 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.77 7.32 -51.93 -0.38 0.39 16 31 H 0.06 0.54 6.28 -51.93 -0.33 0.21 16 32 H 0.08 1.12 7.05 -51.93 -0.37 0.75 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.41 7.11 -51.93 -0.37 0.04 16 36 H 0.08 0.67 5.58 -51.93 -0.29 0.38 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.08 1.04 8.12 -51.93 -0.42 0.62 16 41 H 0.10 1.61 6.49 -51.93 -0.34 1.27 16 42 H 0.41 7.19 8.30 -40.82 -0.34 6.85 16 43 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 44 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 45 H 0.09 2.15 8.06 -52.48 -0.42 1.73 16 46 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 47 H 0.15 4.19 4.36 -52.49 -0.23 3.96 16 LS Contribution 373.66 15.07 5.63 5.63 Total: -1.00 -29.47 373.66 -9.16 -38.63 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: -6.83 Total: 12.46 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: -3.26 Total: -9.44 kcal Atomic # 7 Polarization: -41.81 SS G_CDS: 0.18 Total: -41.63 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: 0.15 Total: -19.77 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.12 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.47 -9.16 -38.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453611368.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.849 kcal (2) G-P(sol) polarization free energy of solvation -29.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds