Wall clock time and date at job start Sat Apr 11 2020 02:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53007 * 109.47256 * 2 1 4 4 C 1.52999 * 109.47224 * 239.99755 * 2 1 3 5 5 N 1.46504 * 109.47320 * 119.99728 * 2 1 3 6 6 C 1.46821 * 124.33625 * 179.97438 * 5 2 1 7 7 C 1.54478 * 105.44079 * 197.00276 * 6 5 2 8 8 C 1.54622 * 101.80052 * 334.62852 * 7 6 5 9 9 H 1.09003 * 110.48420 * 143.46153 * 8 7 6 10 10 N 1.46500 * 110.48732 * 265.97117 * 8 7 6 11 11 C 1.34780 * 120.00242 * 205.00430 * 10 8 7 12 12 O 1.21552 * 119.99584 * 359.97438 * 11 10 8 13 13 C 1.47882 * 120.00022 * 180.02562 * 11 10 8 14 14 C 1.39915 * 120.02841 * 359.72308 * 13 11 10 15 15 C 1.38331 * 120.36029 * 179.78812 * 14 13 11 16 16 C 1.37754 * 120.40930 * 0.46718 * 15 14 13 17 17 C 1.40747 * 120.03827 * 359.78312 * 16 15 14 18 18 C 1.41444 * 120.17537 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99993 * 24.44554 * 18 17 16 20 20 C 1.39935 * 119.99987 * 204.45246 * 18 17 16 21 21 N 1.30831 * 119.99939 * 17.88704 * 20 18 17 22 22 Si 1.86804 * 119.99802 * 197.88556 * 20 18 17 23 23 H 1.48505 * 109.46865 * 90.00049 * 22 20 18 24 24 H 1.48499 * 109.46948 * 209.99572 * 22 20 18 25 25 H 1.48496 * 109.47246 * 330.00276 * 22 20 18 26 26 C 1.39000 * 120.02416 * 179.97438 * 13 11 10 27 27 C 1.34414 * 124.34505 * 359.97438 * 5 2 1 28 28 O 1.21288 * 124.94624 * 359.54674 * 27 5 2 29 29 H 1.09007 * 109.47345 * 300.00011 * 1 2 3 30 30 H 1.09003 * 109.47207 * 60.00108 * 1 2 3 31 31 H 1.09003 * 109.47675 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47232 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.46645 * 299.99709 * 3 2 1 34 34 H 1.08990 * 109.46963 * 59.99743 * 3 2 1 35 35 H 1.08993 * 109.47220 * 300.00177 * 4 2 1 36 36 H 1.09003 * 109.46917 * 59.99959 * 4 2 1 37 37 H 1.09003 * 109.47304 * 179.97438 * 4 2 1 38 38 H 1.08997 * 110.23486 * 78.02294 * 6 5 2 39 39 H 1.08997 * 110.28089 * 316.00431 * 6 5 2 40 40 H 1.09006 * 110.96547 * 216.49379 * 7 6 5 41 41 H 1.08995 * 110.96991 * 92.77292 * 7 6 5 42 42 H 0.97006 * 120.00013 * 24.99628 * 10 8 7 43 43 H 1.08001 * 119.81796 * 359.97438 * 14 13 11 44 44 H 1.07998 * 119.79541 * 180.23364 * 15 14 13 45 45 H 1.07997 * 119.97484 * 179.76632 * 16 15 14 46 46 H 0.97003 * 119.99385 * 180.02562 * 21 20 18 47 47 H 1.08002 * 120.19650 * 359.97438 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 2.0183 -0.6906 1.1962 6 6 3.4374 -0.8793 1.5221 7 6 3.4695 -1.9971 2.5879 8 6 2.0642 -1.8713 3.2205 9 1 1.6720 -2.8553 3.4773 10 7 2.1111 -1.0137 4.4073 11 6 1.1851 -1.1533 5.3767 12 8 0.3109 -1.9905 5.2659 13 6 1.2322 -0.2872 6.5744 14 6 2.2410 0.6735 6.7046 15 6 2.2890 1.4902 7.8201 16 6 1.3501 1.3610 8.8198 17 6 0.3309 0.3967 8.7088 18 6 -0.6349 0.2619 9.7333 19 1 -0.8540 1.0970 10.3822 20 6 -1.3065 -0.9535 9.9063 21 7 -0.8209 -2.0495 9.3821 22 14 -2.8962 -1.0111 10.8855 23 1 -4.0474 -0.7897 9.9739 24 1 -3.0287 -2.3392 11.5365 25 1 -2.8764 0.0498 11.9244 26 6 0.2772 -0.4304 7.5742 27 6 1.2248 -1.2326 2.1361 28 8 0.0122 -1.2122 2.1176 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.6766 -1.7489 -1.2492 36 1 1.6766 -0.2075 -2.1392 37 1 3.1299 -0.7209 -1.2494 38 1 3.8566 0.0412 1.9282 39 1 3.9909 -1.1877 0.6353 40 1 4.2483 -1.8090 3.3270 41 1 3.6025 -2.9745 2.1242 42 1 2.8087 -0.3454 4.4956 43 1 2.9846 0.7799 5.9287 44 1 3.0696 2.2312 7.9094 45 1 1.3965 1.9998 9.6894 46 1 -1.2867 -2.8919 9.5017 47 1 -0.5012 -1.1731 7.4795 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565008708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:36:23 Heat of formation + Delta-G solvation = -71.032752 kcal Electronic energy + Delta-G solvation = -28572.928223 eV Core-core repulsion = 24719.276240 eV Total energy + Delta-G solvation = -3853.651983 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.10328 -40.63159 -38.83992 -37.82898 -37.19545 -35.65075 -34.58036 -32.12720 -31.30118 -30.51492 -28.69735 -28.21561 -27.83449 -27.12717 -24.47067 -23.22102 -22.84990 -22.06209 -21.39844 -19.66504 -19.58247 -18.26972 -17.79008 -17.41696 -16.90010 -16.47789 -16.45031 -16.16130 -15.83362 -15.37300 -15.17524 -14.96843 -14.93146 -14.74382 -14.51287 -14.29657 -14.17059 -14.00398 -13.49648 -13.34648 -13.04263 -12.98137 -12.88532 -12.84080 -12.65507 -12.55509 -12.44147 -12.34906 -12.17492 -12.03787 -12.00185 -11.90219 -11.51819 -11.17476 -11.10063 -10.82753 -9.95597 -9.66087 -9.48804 -9.39926 -8.68553 -6.39835 0.34727 0.99374 1.28448 1.33817 1.46419 1.48522 1.87983 2.09759 2.17266 2.38479 2.76641 3.33929 3.39944 3.68851 3.80217 3.89251 3.93039 3.99429 4.07658 4.15551 4.41476 4.54449 4.57883 4.60847 4.63276 4.69848 4.78280 4.83423 4.88637 4.92154 4.94331 4.96090 5.02754 5.07027 5.17722 5.18066 5.25647 5.29172 5.35389 5.38612 5.49870 5.72855 5.84546 5.90134 6.03860 6.10957 6.26882 6.46007 6.64132 6.86019 6.93387 7.16070 7.26233 8.28260 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.018182 B = 0.002931 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.581433 B = 9549.668263 C =10005.321040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.165 3.835 3 C -0.150 4.150 4 C -0.148 4.148 5 N -0.601 5.601 6 C 0.096 3.904 7 C -0.123 4.123 8 C 0.106 3.894 9 H 0.089 0.911 10 N -0.694 5.694 11 C 0.559 3.441 12 O -0.581 6.581 13 C -0.139 4.139 14 C -0.194 4.194 15 C -0.094 4.094 16 C -0.216 4.216 17 C 0.067 3.933 18 C -0.498 4.498 19 H 0.085 0.915 20 C 0.028 3.972 21 N -0.825 5.825 22 Si 0.982 3.018 23 H -0.270 1.270 24 H -0.268 1.268 25 H -0.247 1.247 26 C -0.133 4.133 27 C 0.493 3.507 28 O -0.567 6.567 29 H 0.031 0.969 30 H 0.079 0.921 31 H 0.040 0.960 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.038 0.962 35 H 0.046 0.954 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.117 0.883 40 H 0.125 0.875 41 H 0.116 0.884 42 H 0.418 0.582 43 H 0.141 0.859 44 H 0.143 0.857 45 H 0.110 0.890 46 H 0.286 0.714 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.946 4.025 -19.841 25.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.082 3.918 3 C -0.208 4.208 4 C -0.206 4.206 5 N -0.336 5.336 6 C -0.025 4.025 7 C -0.160 4.160 8 C -0.003 4.003 9 H 0.107 0.893 10 N -0.349 5.349 11 C 0.350 3.650 12 O -0.461 6.461 13 C -0.142 4.142 14 C -0.214 4.214 15 C -0.112 4.112 16 C -0.236 4.236 17 C 0.064 3.936 18 C -0.527 4.527 19 H 0.103 0.897 20 C -0.187 4.187 21 N -0.450 5.450 22 Si 0.803 3.197 23 H -0.195 1.195 24 H -0.193 1.193 25 H -0.171 1.171 26 C -0.154 4.154 27 C 0.278 3.722 28 O -0.444 6.444 29 H 0.050 0.950 30 H 0.098 0.902 31 H 0.059 0.941 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.111 0.889 39 H 0.135 0.865 40 H 0.143 0.857 41 H 0.135 0.865 42 H 0.258 0.742 43 H 0.159 0.841 44 H 0.161 0.839 45 H 0.128 0.872 46 H 0.096 0.904 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 13.670 3.231 -20.042 24.475 hybrid contribution -1.269 -0.262 0.877 1.565 sum 12.401 2.970 -19.165 23.020 Atomic orbital electron populations 1.22016 0.94737 1.01568 1.01233 1.20687 0.93600 0.93176 0.84346 1.22142 1.02768 0.93413 1.02484 1.22121 1.02794 0.99978 0.95670 1.48592 1.08297 1.54930 1.21772 1.22459 0.80274 0.99586 1.00228 1.23013 0.92756 1.01628 0.98651 1.21716 0.99386 0.95005 0.84208 0.89261 1.45422 1.31596 1.39932 1.17990 1.18895 0.80454 0.82359 0.83328 1.90713 1.37482 1.37800 1.80058 1.19741 1.00094 0.99787 0.94586 1.20854 1.00342 0.99215 1.00945 1.20948 0.98241 0.98705 0.93257 1.21431 0.97362 1.03927 1.00838 1.17945 0.92292 0.91592 0.91740 1.19878 1.19681 0.98407 1.14714 0.89682 1.26875 1.01405 0.94290 0.96161 1.69896 1.37677 1.00191 1.37256 0.85200 0.76846 0.79093 0.78586 1.19505 1.19257 1.17056 1.21432 0.99132 1.01542 0.93252 1.21652 0.87388 0.78844 0.84271 1.90731 1.15520 1.60197 1.77974 0.94981 0.90181 0.94068 0.89720 0.89740 0.94293 0.93443 0.89788 0.89673 0.88901 0.86461 0.85654 0.86517 0.74189 0.84126 0.83908 0.87185 0.90380 0.88835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.51 6.99 71.98 0.50 -3.01 16 2 C 0.16 2.96 1.20 3.60 0.00 2.97 16 3 C -0.15 -2.03 8.54 71.98 0.61 -1.42 16 4 C -0.15 -1.69 8.49 71.98 0.61 -1.08 16 5 N -0.60 -12.31 2.76 -770.90 -2.13 -14.43 16 6 C 0.10 0.99 6.60 86.82 0.57 1.56 16 7 C -0.12 -1.54 6.78 31.65 0.21 -1.33 16 8 C 0.11 2.96 3.28 44.98 0.15 3.11 16 9 H 0.09 3.05 7.55 -2.39 -0.02 3.03 16 10 N -0.69 -22.23 5.05 -445.41 -2.25 -24.48 16 11 C 0.56 26.02 7.77 86.80 0.67 26.70 16 12 O -0.58 -32.94 15.98 -3.88 -0.06 -33.00 16 13 C -0.14 -6.78 5.87 -20.13 -0.12 -6.90 16 14 C -0.19 -7.54 9.55 22.70 0.22 -7.32 16 15 C -0.09 -3.66 10.01 22.18 0.22 -3.44 16 16 C -0.22 -10.15 9.78 22.77 0.22 -9.93 16 17 C 0.07 3.71 5.57 -21.32 -0.12 3.59 16 18 C -0.50 -27.86 9.05 23.47 0.21 -27.65 16 19 H 0.09 4.48 7.91 -2.91 -0.02 4.45 16 20 C 0.03 1.49 5.14 85.25 0.44 1.93 16 21 N -0.82 -47.68 10.96 21.82 0.24 -47.44 16 22 Si 0.98 41.27 29.60 68.60 2.03 43.30 16 23 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 24 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 25 H -0.25 -9.69 7.11 99.48 0.71 -8.98 16 26 C -0.13 -7.69 8.24 23.01 0.19 -7.50 16 27 C 0.49 15.78 7.49 87.90 0.66 16.43 16 28 O -0.57 -24.86 13.99 -3.06 -0.04 -24.90 16 29 H 0.03 1.04 7.06 -2.38 -0.02 1.03 16 30 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.04 1.25 7.08 -2.39 -0.02 1.23 16 32 H 0.08 0.73 7.90 -2.39 -0.02 0.71 16 33 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.08 0.56 7.21 -2.39 -0.02 0.54 16 38 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.12 0.47 7.13 -2.39 -0.02 0.45 16 40 H 0.13 1.02 8.06 -2.38 -0.02 1.00 16 41 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.42 10.00 6.65 -92.70 -0.62 9.38 16 43 H 0.14 3.93 6.38 -2.91 -0.02 3.91 16 44 H 0.14 4.22 8.06 -2.91 -0.02 4.19 16 45 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 46 H 0.29 15.28 8.30 -92.71 -0.77 14.51 16 47 H 0.09 6.10 5.74 -2.91 -0.02 6.09 16 Total: -1.00 -85.88 380.09 3.42 -82.46 By element: Atomic # 1 Polarization: 31.41 SS G_CDS: 0.37 Total: 31.78 kcal Atomic # 6 Polarization: -18.55 SS G_CDS: 5.27 Total: -13.28 kcal Atomic # 7 Polarization: -82.21 SS G_CDS: -4.14 Total: -86.35 kcal Atomic # 8 Polarization: -57.80 SS G_CDS: -0.10 Total: -57.90 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Total: -85.88 3.42 -82.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565008708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.423 kcal (2) G-P(sol) polarization free energy of solvation -85.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds