Wall clock time and date at job start Sat Apr 11 2020 02:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 110.65965 * 2 1 4 4 C 1.54690 * 110.74860 * 123.20887 * 2 1 3 5 5 C 1.51682 * 101.91730 * 93.03934 * 4 2 1 6 6 C 1.37308 * 132.05554 * 195.63160 * 5 4 2 7 7 C 1.39813 * 119.85177 * 178.79541 * 6 5 4 8 8 C 1.47608 * 120.26438 * 180.29599 * 7 6 5 9 9 O 1.21582 * 119.99599 * 332.95231 * 8 7 6 10 10 N 1.34777 * 120.00161 * 152.95235 * 8 7 6 11 11 C 1.47427 * 125.64636 * 3.80917 * 10 8 7 12 12 C 1.54911 * 104.82936 * 204.08899 * 11 10 8 13 13 C 1.55155 * 101.58256 * 322.98832 * 12 11 10 14 14 H 1.09000 * 110.71918 * 276.96815 * 13 12 11 15 15 N 1.46500 * 110.72098 * 153.86549 * 13 12 11 16 16 C 1.36936 * 119.99882 * 86.45210 * 15 13 12 17 17 H 1.08000 * 119.99846 * 0.02562 * 16 15 13 18 18 C 1.38810 * 119.99863 * 179.97438 * 16 15 13 19 19 N 1.31622 * 120.00013 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99847 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47343 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47089 * 120.00456 * 20 18 16 23 23 H 1.48498 * 109.47299 * 240.00228 * 20 18 16 24 24 C 1.47016 * 125.64919 * 183.49419 * 10 8 7 25 25 H 1.08996 * 109.88406 * 298.39682 * 24 10 8 26 26 C 1.52997 * 109.88239 * 59.56388 * 24 10 8 27 27 C 1.39752 * 119.47016 * 0.56402 * 7 6 5 28 28 C 1.37464 * 120.20036 * 359.63992 * 27 7 6 29 29 C 1.39173 * 107.00303 * 15.15499 * 5 4 2 30 30 O 1.35998 * 111.15946 * 1.46331 * 29 5 4 31 31 H 1.09005 * 109.46881 * 296.78715 * 1 2 3 32 32 H 1.08993 * 109.47508 * 56.78751 * 1 2 3 33 33 H 1.08999 * 109.46998 * 176.79782 * 1 2 3 34 34 H 1.09003 * 110.94122 * 334.88245 * 4 2 1 35 35 H 1.08996 * 110.97377 * 211.20794 * 4 2 1 36 36 H 1.07997 * 120.07854 * 359.11052 * 6 5 4 37 37 H 1.09004 * 110.36580 * 322.92532 * 11 10 8 38 38 H 1.08997 * 110.37078 * 85.13984 * 11 10 8 39 39 H 1.08998 * 111.00350 * 81.06388 * 12 11 10 40 40 H 1.08997 * 111.00067 * 204.87482 * 12 11 10 41 41 H 0.96998 * 119.99530 * 266.45441 * 15 13 12 42 42 H 0.97005 * 119.99518 * 179.97438 * 19 18 16 43 43 H 1.08998 * 109.47218 * 58.54383 * 26 24 10 44 44 H 1.08998 * 109.47327 * 178.54585 * 26 24 10 45 45 H 1.09008 * 109.47079 * 298.54320 * 26 24 10 46 46 H 1.07995 * 119.89706 * 179.97438 * 27 7 6 47 47 H 1.08001 * 119.78747 * 180.27144 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9146 1.0200 0.0000 4 6 2.0780 -0.7923 1.2103 5 6 2.2626 -2.1774 0.6204 6 6 2.4482 -3.4075 1.2017 7 6 2.5679 -4.5457 0.3987 8 6 2.7612 -5.8734 1.0142 9 8 3.2941 -5.9668 2.1030 10 7 2.3469 -6.9819 0.3692 11 6 1.7611 -7.0208 -0.9831 12 6 0.9181 -8.3202 -1.0128 13 6 1.8003 -9.2831 -0.1751 14 1 2.5828 -9.7245 -0.7924 15 7 0.9821 -10.3273 0.4465 16 6 0.6932 -11.4733 -0.2452 17 1 1.0690 -11.6075 -1.2487 18 6 -0.0816 -12.4629 0.3440 19 7 -0.5391 -12.2994 1.5673 20 14 -0.4762 -14.0259 -0.5998 21 1 0.1514 -13.9642 -1.9442 22 1 0.0548 -15.1986 0.1406 23 1 -1.9481 -14.1577 -0.7457 24 6 2.4104 -8.3534 0.8951 25 1 3.4477 -8.6309 1.0823 26 6 1.6006 -8.4524 2.1894 27 6 2.5087 -4.4158 -0.9915 28 6 2.3268 -3.1790 -1.5633 29 6 2.2049 -2.0414 -0.7635 30 8 2.0392 -0.7401 -1.1223 31 1 -0.3633 0.4632 0.9174 32 1 -0.3634 0.5628 -0.8597 33 1 -0.3633 -1.0261 -0.0574 34 1 1.3541 -0.8091 2.0250 35 1 3.0303 -0.3820 1.5464 36 1 2.4966 -3.4962 2.2769 37 1 1.1239 -6.1515 -1.1456 38 1 2.5478 -7.0598 -1.7364 39 1 -0.0518 -8.1675 -0.5394 40 1 0.7994 -8.6856 -2.0328 41 1 0.6449 -10.2067 1.3480 42 1 -1.0809 -12.9909 1.9788 43 1 0.5669 -8.1670 1.9939 44 1 1.6309 -9.4771 2.5595 45 1 2.0270 -7.7834 2.9369 46 1 2.6007 -5.2904 -1.6184 47 1 2.2776 -3.0868 -2.6382 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074969708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:35:43 Heat of formation + Delta-G solvation = -9.193869 kcal Electronic energy + Delta-G solvation = -28250.066249 eV Core-core repulsion = 24399.095801 eV Total energy + Delta-G solvation = -3850.970448 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.59909 -40.17630 -37.91220 -36.98180 -34.27823 -33.51203 -32.04085 -31.06957 -30.72884 -30.41771 -28.77368 -27.16590 -25.28365 -24.36957 -23.33775 -22.67551 -21.94032 -21.73018 -19.94940 -18.76641 -17.74320 -17.44011 -17.30577 -16.45165 -16.08027 -15.69247 -15.60338 -14.67030 -14.52836 -14.36791 -14.14794 -13.95750 -13.70681 -13.58117 -13.31489 -12.97404 -12.86091 -12.77723 -12.65771 -12.44146 -12.43051 -12.06501 -11.74161 -11.61270 -11.46020 -11.25039 -11.18757 -10.99579 -10.95062 -10.75726 -10.46924 -10.20945 -9.97804 -9.75791 -9.58724 -9.18424 -8.96088 -8.50567 -8.32278 -7.03544 -5.83038 -3.12821 0.73650 1.07283 2.74908 2.89823 3.13196 3.40046 3.45859 3.48109 3.62871 4.02103 4.17991 4.43908 4.51632 4.54003 4.58630 4.72589 4.82011 4.93003 5.07258 5.11105 5.18751 5.25688 5.31478 5.34502 5.41959 5.44466 5.49855 5.55707 5.62037 5.68462 5.74304 5.81014 5.91466 6.02597 6.07451 6.09575 6.12977 6.21556 6.25089 6.32028 6.54967 6.55270 6.70439 6.82036 6.85989 6.98020 7.65605 7.73627 8.32574 8.35933 9.47256 10.02282 10.37216 11.39505 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.024768 B = 0.002425 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.206947 B =11544.857086 C =11857.053345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.076 3.924 3 H 0.117 0.883 4 C -0.105 4.105 5 C -0.184 4.184 6 C -0.013 4.013 7 C -0.152 4.152 8 C 0.575 3.425 9 O -0.541 6.541 10 N -0.602 5.602 11 C 0.088 3.912 12 C -0.154 4.154 13 C 0.173 3.827 14 H 0.063 0.937 15 N -0.717 5.717 16 C -0.243 4.243 17 H 0.072 0.928 18 C -0.011 4.011 19 N -0.931 5.931 20 Si 0.908 3.092 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.292 1.292 24 C 0.129 3.871 25 H 0.073 0.927 26 C -0.158 4.158 27 C -0.063 4.063 28 C -0.146 4.146 29 C 0.126 3.874 30 O -0.298 6.298 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.135 0.865 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.391 0.609 42 H 0.256 0.744 43 H 0.056 0.944 44 H 0.080 0.920 45 H 0.059 0.941 46 H 0.151 0.849 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.172 25.061 -4.849 25.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.020 3.980 3 H 0.135 0.865 4 C -0.142 4.142 5 C -0.185 4.185 6 C -0.032 4.032 7 C -0.155 4.155 8 C 0.364 3.636 9 O -0.420 6.420 10 N -0.335 5.335 11 C -0.035 4.035 12 C -0.196 4.196 13 C 0.062 3.938 14 H 0.081 0.919 15 N -0.361 5.361 16 C -0.374 4.374 17 H 0.090 0.910 18 C -0.208 4.208 19 N -0.579 5.579 20 Si 0.739 3.261 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.219 1.219 24 C 0.026 3.974 25 H 0.091 0.909 26 C -0.217 4.217 27 C -0.081 4.081 28 C -0.165 4.165 29 C 0.080 3.920 30 O -0.212 6.212 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.112 0.888 35 H 0.110 0.890 36 H 0.153 0.847 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.229 0.771 42 H 0.066 0.934 43 H 0.075 0.925 44 H 0.099 0.901 45 H 0.078 0.922 46 H 0.168 0.832 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 4.486 25.008 -4.526 25.807 hybrid contribution -0.488 -0.775 -0.158 0.929 sum 3.998 24.233 -4.684 25.003 Atomic orbital electron populations 1.22266 0.93995 1.03536 1.03189 1.23458 0.94894 0.96362 0.83257 0.86531 1.21865 1.02852 0.91033 0.98443 1.20627 1.08671 0.95317 0.93872 1.20282 0.93488 0.89068 1.00386 1.19753 1.08477 0.93532 0.93754 1.17713 0.78461 0.82900 0.84510 1.90765 1.43659 1.86622 1.20941 1.48464 1.60851 1.06735 1.17457 1.22747 0.96725 1.00233 0.83761 1.23586 0.99768 0.94042 1.02160 1.21184 0.92763 0.88289 0.91607 0.91877 1.42680 1.59584 1.16315 1.17515 1.19277 1.26347 0.94083 0.97695 0.90993 1.24761 1.00652 0.98805 0.96538 1.69673 1.39912 1.34732 1.13542 0.86107 0.77705 0.83418 0.78854 1.20512 1.21839 1.21864 1.21846 0.99926 0.80127 0.95516 0.90858 1.21999 0.99851 1.03110 0.96695 1.21650 0.94821 0.97505 0.94171 1.20207 1.07261 0.89028 1.00007 1.19828 0.94400 0.84973 0.92792 1.86857 1.79588 1.16459 1.38302 0.90515 0.91269 0.91644 0.88752 0.88955 0.84714 0.90533 0.91279 0.90563 0.90476 0.77091 0.93425 0.92456 0.90118 0.92244 0.83213 0.84842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.05 9.50 37.16 0.35 -0.70 16 2 C 0.08 0.53 4.31 -25.84 -0.11 0.42 16 3 H 0.12 0.54 8.14 -51.93 -0.42 0.12 16 4 C -0.10 -0.78 6.65 -26.51 -0.18 -0.95 16 5 C -0.18 -1.96 6.25 -104.13 -0.65 -2.61 16 6 C -0.01 -0.16 9.58 -39.33 -0.38 -0.54 16 7 C -0.15 -2.03 5.70 -104.92 -0.60 -2.63 16 8 C 0.57 9.34 7.40 -12.44 -0.09 9.25 16 9 O -0.54 -10.46 15.69 5.29 0.08 -10.37 16 10 N -0.60 -9.40 3.08 -164.20 -0.51 -9.90 16 11 C 0.09 1.14 5.02 -2.53 -0.01 1.12 16 12 C -0.15 -2.46 6.77 -24.58 -0.17 -2.63 16 13 C 0.17 3.28 3.45 -66.09 -0.23 3.05 16 14 H 0.06 1.18 8.12 -51.93 -0.42 0.76 16 15 N -0.72 -17.14 5.02 -51.65 -0.26 -17.40 16 16 C -0.24 -6.45 9.98 -15.06 -0.15 -6.60 16 17 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 18 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 19 N -0.93 -27.42 13.06 55.49 0.72 -26.70 16 20 Si 0.91 21.81 29.55 -169.99 -5.02 16.79 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 C 0.13 2.29 3.47 -66.95 -0.23 2.06 16 25 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 26 C -0.16 -2.99 7.94 37.16 0.29 -2.70 16 27 C -0.06 -0.70 7.92 -39.30 -0.31 -1.01 16 28 C -0.15 -1.51 10.05 -39.36 -0.40 -1.90 16 29 C 0.13 1.37 6.90 -38.73 -0.27 1.10 16 30 O -0.30 -3.03 10.81 -19.74 -0.21 -3.24 16 31 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.50 8.07 -51.93 -0.42 0.08 16 34 H 0.09 0.57 7.92 -51.93 -0.41 0.16 16 35 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.14 1.64 7.89 -52.49 -0.41 1.23 16 37 H 0.08 0.87 6.15 -51.93 -0.32 0.55 16 38 H 0.07 0.74 7.29 -51.93 -0.38 0.36 16 39 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 41 H 0.39 9.92 4.94 -40.82 -0.20 9.71 16 42 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 43 H 0.06 1.11 8.05 -51.93 -0.42 0.69 16 44 H 0.08 1.65 6.73 -51.93 -0.35 1.30 16 45 H 0.06 1.12 6.86 -51.92 -0.36 0.77 16 46 H 0.15 1.42 4.55 -52.49 -0.24 1.18 16 47 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 372.69 15.07 5.62 5.62 Total: -1.00 -32.07 372.69 -9.65 -41.72 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -6.86 Total: 9.16 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: -3.22 Total: -5.66 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: -0.04 Total: -54.00 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -0.13 Total: -13.62 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.07 -9.65 -41.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074969708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.526 kcal (2) G-P(sol) polarization free energy of solvation -32.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds