Wall clock time and date at job start Sat Apr 11 2020 02:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 110.65965 * 2 1 4 4 C 1.54690 * 110.74860 * 123.20887 * 2 1 3 5 5 C 1.51682 * 101.91730 * 93.03934 * 4 2 1 6 6 C 1.37308 * 132.05554 * 195.63160 * 5 4 2 7 7 C 1.39813 * 119.85177 * 178.79541 * 6 5 4 8 8 C 1.47608 * 120.26438 * 180.29599 * 7 6 5 9 9 O 1.21582 * 119.99599 * 332.95231 * 8 7 6 10 10 N 1.34777 * 120.00161 * 152.95235 * 8 7 6 11 11 C 1.47427 * 125.64636 * 3.80917 * 10 8 7 12 12 C 1.54911 * 104.82936 * 204.08899 * 11 10 8 13 13 C 1.55155 * 101.58256 * 322.98832 * 12 11 10 14 14 H 1.09000 * 110.71918 * 276.96815 * 13 12 11 15 15 N 1.46500 * 110.72098 * 153.86549 * 13 12 11 16 16 C 1.36936 * 119.99882 * 86.45210 * 15 13 12 17 17 H 1.08000 * 119.99846 * 0.02562 * 16 15 13 18 18 C 1.38810 * 119.99863 * 179.97438 * 16 15 13 19 19 N 1.31622 * 120.00013 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99847 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47343 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47089 * 120.00456 * 20 18 16 23 23 H 1.48498 * 109.47299 * 240.00228 * 20 18 16 24 24 C 1.47016 * 125.64919 * 183.49419 * 10 8 7 25 25 H 1.08996 * 109.88406 * 298.39682 * 24 10 8 26 26 C 1.52997 * 109.88239 * 59.56388 * 24 10 8 27 27 C 1.39752 * 119.47016 * 0.56402 * 7 6 5 28 28 C 1.37464 * 120.20036 * 359.63992 * 27 7 6 29 29 C 1.39173 * 107.00303 * 15.15499 * 5 4 2 30 30 O 1.35998 * 111.15946 * 1.46331 * 29 5 4 31 31 H 1.09005 * 109.46881 * 296.78715 * 1 2 3 32 32 H 1.08993 * 109.47508 * 56.78751 * 1 2 3 33 33 H 1.08999 * 109.46998 * 176.79782 * 1 2 3 34 34 H 1.09003 * 110.94122 * 334.88245 * 4 2 1 35 35 H 1.08996 * 110.97377 * 211.20794 * 4 2 1 36 36 H 1.07997 * 120.07854 * 359.11052 * 6 5 4 37 37 H 1.09004 * 110.36580 * 322.92532 * 11 10 8 38 38 H 1.08997 * 110.37078 * 85.13984 * 11 10 8 39 39 H 1.08998 * 111.00350 * 81.06388 * 12 11 10 40 40 H 1.08997 * 111.00067 * 204.87482 * 12 11 10 41 41 H 0.96998 * 119.99530 * 266.45441 * 15 13 12 42 42 H 0.97005 * 119.99518 * 179.97438 * 19 18 16 43 43 H 1.08998 * 109.47218 * 58.54383 * 26 24 10 44 44 H 1.08998 * 109.47327 * 178.54585 * 26 24 10 45 45 H 1.09008 * 109.47079 * 298.54320 * 26 24 10 46 46 H 1.07995 * 119.89706 * 179.97438 * 27 7 6 47 47 H 1.08001 * 119.78747 * 180.27144 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9146 1.0200 0.0000 4 6 2.0780 -0.7923 1.2103 5 6 2.2626 -2.1774 0.6204 6 6 2.4482 -3.4075 1.2017 7 6 2.5679 -4.5457 0.3987 8 6 2.7612 -5.8734 1.0142 9 8 3.2941 -5.9668 2.1030 10 7 2.3469 -6.9819 0.3692 11 6 1.7611 -7.0208 -0.9831 12 6 0.9181 -8.3202 -1.0128 13 6 1.8003 -9.2831 -0.1751 14 1 2.5828 -9.7245 -0.7924 15 7 0.9821 -10.3273 0.4465 16 6 0.6932 -11.4733 -0.2452 17 1 1.0690 -11.6075 -1.2487 18 6 -0.0816 -12.4629 0.3440 19 7 -0.5391 -12.2994 1.5673 20 14 -0.4762 -14.0259 -0.5998 21 1 0.1514 -13.9642 -1.9442 22 1 0.0548 -15.1986 0.1406 23 1 -1.9481 -14.1577 -0.7457 24 6 2.4104 -8.3534 0.8951 25 1 3.4477 -8.6309 1.0823 26 6 1.6006 -8.4524 2.1894 27 6 2.5087 -4.4158 -0.9915 28 6 2.3268 -3.1790 -1.5633 29 6 2.2049 -2.0414 -0.7635 30 8 2.0392 -0.7401 -1.1223 31 1 -0.3633 0.4632 0.9174 32 1 -0.3634 0.5628 -0.8597 33 1 -0.3633 -1.0261 -0.0574 34 1 1.3541 -0.8091 2.0250 35 1 3.0303 -0.3820 1.5464 36 1 2.4966 -3.4962 2.2769 37 1 1.1239 -6.1515 -1.1456 38 1 2.5478 -7.0598 -1.7364 39 1 -0.0518 -8.1675 -0.5394 40 1 0.7994 -8.6856 -2.0328 41 1 0.6449 -10.2067 1.3480 42 1 -1.0809 -12.9909 1.9788 43 1 0.5669 -8.1670 1.9939 44 1 1.6309 -9.4771 2.5595 45 1 2.0270 -7.7834 2.9369 46 1 2.6007 -5.2904 -1.6184 47 1 2.2776 -3.0868 -2.6382 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074969708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:35:42 Heat of formation + Delta-G solvation = -28.314599 kcal Electronic energy + Delta-G solvation = -28250.895386 eV Core-core repulsion = 24399.095801 eV Total energy + Delta-G solvation = -3851.799585 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.36799 -41.39453 -39.13440 -38.06301 -35.97958 -34.21452 -33.59420 -32.30625 -31.79450 -31.48016 -30.29128 -27.85509 -26.82882 -25.69692 -24.94557 -23.65083 -22.73000 -22.52557 -21.24083 -20.13437 -19.43592 -18.52338 -18.23415 -17.24975 -17.13331 -17.00758 -16.66917 -16.38875 -15.90205 -15.41281 -15.26182 -15.13896 -14.80259 -14.64521 -14.33384 -14.23067 -13.97594 -13.77629 -13.60339 -13.51393 -13.24891 -13.12516 -13.00288 -12.98315 -12.90281 -12.87814 -12.51542 -12.15386 -12.05817 -12.00015 -11.84115 -11.74706 -11.55899 -11.49962 -10.97303 -10.90735 -10.01894 -9.72608 -9.22325 -8.99578 -7.92489 -5.21435 -0.18176 0.24784 1.50404 1.51057 1.60795 1.67986 1.85885 2.22645 2.58703 2.68569 3.33224 3.39662 3.44424 3.58218 3.70350 3.80736 3.84346 3.93784 3.95438 4.11376 4.16776 4.18800 4.26977 4.36371 4.38103 4.47152 4.55117 4.63170 4.64156 4.72457 4.76712 4.81021 4.83621 4.90386 5.02801 5.04052 5.09018 5.19155 5.22416 5.23744 5.24611 5.26671 5.34347 5.45699 5.51497 5.57078 6.09554 6.29260 6.50038 7.07090 7.36567 8.10013 8.33479 9.31526 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.024768 B = 0.002425 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.206947 B =11544.857086 C =11857.053345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.073 3.927 3 H 0.145 0.855 4 C -0.105 4.105 5 C -0.188 4.188 6 C -0.026 4.026 7 C -0.173 4.173 8 C 0.572 3.428 9 O -0.583 6.583 10 N -0.602 5.602 11 C 0.094 3.906 12 C -0.145 4.145 13 C 0.166 3.834 14 H 0.071 0.929 15 N -0.733 5.733 16 C -0.234 4.234 17 H 0.083 0.917 18 C -0.078 4.078 19 N -0.972 5.972 20 Si 0.972 3.028 21 H -0.262 1.262 22 H -0.299 1.299 23 H -0.297 1.297 24 C 0.135 3.865 25 H 0.068 0.932 26 C -0.144 4.144 27 C -0.057 4.057 28 C -0.146 4.146 29 C 0.122 3.878 30 O -0.309 6.309 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.045 0.955 34 H 0.107 0.893 35 H 0.104 0.896 36 H 0.126 0.874 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.055 0.945 40 H 0.093 0.907 41 H 0.380 0.620 42 H 0.249 0.751 43 H 0.047 0.953 44 H 0.059 0.941 45 H 0.054 0.946 46 H 0.168 0.832 47 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.489 27.378 -7.547 28.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.018 3.982 3 H 0.162 0.838 4 C -0.142 4.142 5 C -0.189 4.189 6 C -0.045 4.045 7 C -0.176 4.176 8 C 0.364 3.636 9 O -0.464 6.464 10 N -0.334 5.334 11 C -0.027 4.027 12 C -0.186 4.186 13 C 0.056 3.944 14 H 0.089 0.911 15 N -0.376 5.376 16 C -0.366 4.366 17 H 0.101 0.899 18 C -0.270 4.270 19 N -0.623 5.623 20 Si 0.802 3.198 21 H -0.186 1.186 22 H -0.226 1.226 23 H -0.224 1.224 24 C 0.031 3.969 25 H 0.086 0.914 26 C -0.203 4.203 27 C -0.075 4.075 28 C -0.165 4.165 29 C 0.076 3.924 30 O -0.223 6.223 31 H 0.114 0.886 32 H 0.093 0.907 33 H 0.064 0.936 34 H 0.125 0.875 35 H 0.122 0.878 36 H 0.144 0.856 37 H 0.118 0.882 38 H 0.122 0.878 39 H 0.073 0.927 40 H 0.112 0.888 41 H 0.216 0.784 42 H 0.058 0.942 43 H 0.066 0.934 44 H 0.078 0.922 45 H 0.073 0.927 46 H 0.186 0.814 47 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 4.823 27.372 -7.292 28.734 hybrid contribution -0.543 -1.325 0.676 1.583 sum 4.280 26.047 -6.616 27.213 Atomic orbital electron populations 1.22275 0.93426 1.02593 1.04490 1.23770 0.95400 0.97145 0.81908 0.83796 1.22001 1.03962 0.89157 0.99038 1.20896 1.07660 0.95969 0.94402 1.20290 0.94409 0.89768 1.00074 1.19591 1.11072 0.91948 0.94986 1.18213 0.77531 0.83861 0.84009 1.90734 1.45600 1.87259 1.22849 1.48462 1.60854 1.05599 1.18479 1.22953 0.97539 0.99331 0.82923 1.23397 0.98515 0.94679 1.01961 1.21392 0.92952 0.87923 0.92092 0.91127 1.42867 1.60316 1.17086 1.17282 1.19693 1.24560 0.94414 0.97912 0.89869 1.25557 1.01771 1.02100 0.97533 1.69836 1.41542 1.35569 1.15342 0.85081 0.76950 0.79485 0.78278 1.18573 1.22616 1.22412 1.21606 0.99122 0.81604 0.94617 0.91399 1.21816 0.99483 1.01482 0.97470 1.21763 0.94084 0.98574 0.93030 1.20491 1.06236 0.88472 1.01266 1.20095 0.93697 0.85641 0.92964 1.86852 1.79584 1.16097 1.39727 0.88608 0.90726 0.93554 0.87476 0.87763 0.85645 0.88237 0.87752 0.92655 0.88806 0.78407 0.94171 0.93371 0.92216 0.92700 0.81444 0.82392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.65 9.50 71.98 0.68 -0.97 16 2 C 0.07 0.80 4.31 31.17 0.13 0.94 16 3 H 0.14 0.80 8.14 -2.38 -0.02 0.79 16 4 C -0.10 -1.31 6.65 30.74 0.20 -1.11 16 5 C -0.19 -3.72 6.25 -19.55 -0.12 -3.85 16 6 C -0.03 -0.64 9.58 22.43 0.21 -0.43 16 7 C -0.17 -4.45 5.70 -20.06 -0.11 -4.57 16 8 C 0.57 18.54 7.40 86.72 0.64 19.18 16 9 O -0.58 -23.20 15.69 -3.97 -0.06 -23.27 16 10 N -0.60 -18.26 3.08 -791.68 -2.44 -20.70 16 11 C 0.09 2.15 5.02 86.86 0.44 2.59 16 12 C -0.14 -4.35 6.77 31.99 0.22 -4.13 16 13 C 0.17 6.17 3.45 46.18 0.16 6.33 16 14 H 0.07 2.54 8.12 -2.39 -0.02 2.52 16 15 N -0.73 -35.45 5.02 -317.31 -1.59 -37.05 16 16 C -0.23 -12.38 9.98 84.03 0.84 -11.54 16 17 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 18 C -0.08 -4.35 5.50 84.86 0.47 -3.88 16 19 N -0.97 -58.94 13.06 21.65 0.28 -58.66 16 20 Si 0.97 45.16 29.55 68.60 2.03 47.19 16 21 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 22 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 23 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 24 C 0.13 4.82 3.47 45.35 0.16 4.98 16 25 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 26 C -0.14 -5.71 7.94 71.98 0.57 -5.14 16 27 C -0.06 -1.10 7.92 22.45 0.18 -0.92 16 28 C -0.15 -2.58 10.05 22.41 0.23 -2.35 16 29 C 0.12 2.38 6.90 22.82 0.16 2.54 16 30 O -0.31 -5.44 10.81 -93.53 -1.01 -6.45 16 31 H 0.10 0.56 8.14 -2.38 -0.02 0.54 16 32 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.05 0.63 8.07 -2.39 -0.02 0.61 16 34 H 0.11 1.06 7.92 -2.39 -0.02 1.05 16 35 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.13 3.17 7.89 -2.91 -0.02 3.15 16 37 H 0.10 1.91 6.15 -2.39 -0.01 1.89 16 38 H 0.10 1.75 7.29 -2.39 -0.02 1.73 16 39 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 41 H 0.38 19.98 4.94 -92.71 -0.46 19.52 16 42 H 0.25 14.74 8.31 -92.70 -0.77 13.97 16 43 H 0.05 1.95 8.05 -2.39 -0.02 1.93 16 44 H 0.06 2.59 6.73 -2.39 -0.02 2.58 16 45 H 0.05 2.18 6.86 -2.38 -0.02 2.17 16 46 H 0.17 2.52 4.55 -2.91 -0.01 2.50 16 47 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 Total: -1.00 -71.54 372.69 2.79 -68.75 By element: Atomic # 1 Polarization: 31.96 SS G_CDS: 0.53 Total: 32.49 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: 5.05 Total: -2.32 kcal Atomic # 7 Polarization: -112.65 SS G_CDS: -3.75 Total: -116.40 kcal Atomic # 8 Polarization: -28.64 SS G_CDS: -1.07 Total: -29.71 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -71.54 2.79 -68.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074969708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.439 kcal (2) G-P(sol) polarization free energy of solvation -71.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds