Wall clock time and date at job start Sat Apr 11 2020 02:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.47316 * 2 1 4 4 C 1.46505 * 119.99925 * 274.77699 * 3 2 1 5 5 C 1.50701 * 109.46905 * 270.67918 * 4 3 2 6 6 H 1.08002 * 119.99759 * 5.26155 * 5 4 3 7 7 C 1.37876 * 119.99725 * 185.25708 * 5 4 3 8 8 N 1.31509 * 120.00063 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99685 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.47221 * 90.00452 * 9 7 5 11 11 H 1.48505 * 109.46974 * 209.99971 * 9 7 5 12 12 H 1.48500 * 109.47311 * 330.00299 * 9 7 5 13 13 C 1.34771 * 119.99980 * 94.77545 * 3 2 1 14 14 O 1.21283 * 120.00182 * 355.76640 * 13 3 2 15 15 C 1.50704 * 120.00040 * 176.04642 * 13 3 2 16 16 H 1.09003 * 110.43383 * 35.83145 * 15 13 3 17 17 C 1.54628 * 110.48948 * 158.51742 * 15 13 3 18 18 C 1.54473 * 101.76763 * 143.47555 * 17 15 13 19 19 N 1.46771 * 105.47354 * 334.58488 * 18 17 15 20 20 C 1.46497 * 124.35050 * 196.99621 * 19 18 17 21 21 C 1.50702 * 109.47061 * 270.04461 * 20 19 18 22 22 C 1.38236 * 120.00301 * 269.72956 * 21 20 19 23 23 C 1.38226 * 119.99973 * 179.76804 * 22 21 20 24 24 C 1.38231 * 120.00121 * 0.50433 * 23 22 21 25 25 C 1.38241 * 120.00110 * 359.74838 * 24 23 22 26 26 C 1.38230 * 119.99544 * 90.00029 * 21 20 19 27 27 C 1.34420 * 111.29708 * 17.01447 * 19 18 17 28 28 O 1.21287 * 124.94175 * 179.55979 * 27 19 18 29 29 H 1.09003 * 109.47029 * 184.99556 * 1 2 3 30 30 H 1.08997 * 109.46789 * 304.99936 * 1 2 3 31 31 H 1.09000 * 109.46665 * 65.00164 * 1 2 3 32 32 H 1.09006 * 109.47311 * 239.99844 * 2 1 3 33 33 H 1.08999 * 109.47438 * 120.00264 * 2 1 3 34 34 H 1.08998 * 109.47083 * 30.67479 * 4 3 2 35 35 H 1.08994 * 109.46861 * 150.68339 * 4 3 2 36 36 H 0.97000 * 119.99788 * 179.97438 * 8 7 5 37 37 H 1.09003 * 110.97067 * 261.59805 * 17 15 13 38 38 H 1.09001 * 110.96611 * 25.35227 * 17 15 13 39 39 H 1.08996 * 110.25025 * 215.59167 * 18 17 15 40 40 H 1.08999 * 110.32274 * 93.61899 * 18 17 15 41 41 H 1.08998 * 109.47164 * 30.04761 * 20 19 18 42 42 H 1.09003 * 109.47252 * 150.04779 * 20 19 18 43 43 H 1.08002 * 119.99454 * 359.97438 * 22 21 20 44 44 H 1.08002 * 120.00084 * 180.22835 * 23 22 21 45 45 H 1.08003 * 120.00308 * 179.72714 * 24 23 22 46 46 H 1.07994 * 120.00298 * 179.97438 * 25 24 23 47 47 H 1.08004 * 120.00516 * 0.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1630 2.1070 -1.2644 5 6 3.5418 1.8704 -1.8246 6 1 4.2106 1.1760 -1.3378 7 6 3.9495 2.5403 -2.9586 8 7 3.1353 3.3862 -3.5510 9 14 5.6584 2.2465 -3.6533 10 1 5.6099 1.1300 -4.6314 11 1 6.1355 3.4784 -4.3317 12 1 6.5883 1.8974 -2.5494 13 6 2.3346 1.9841 1.1631 14 8 2.1428 1.4114 2.2148 15 6 2.9208 3.3725 1.1572 16 1 2.4802 3.9682 0.3577 17 6 2.7058 4.0566 2.5271 18 6 4.0156 4.8597 2.6872 19 7 5.0120 4.1495 1.8767 20 6 6.4603 4.3307 2.0014 21 6 6.9101 5.4327 1.0770 22 6 7.2971 5.1352 -0.2163 23 6 7.7050 6.1466 -1.0656 24 6 7.7359 7.4543 -0.6184 25 6 7.3539 7.7512 0.6766 26 6 6.9409 6.7403 1.5242 27 6 4.4247 3.3116 1.0049 28 8 5.0146 2.6094 0.2113 29 1 -0.3633 -1.0238 0.0895 30 1 -0.3633 0.5894 0.8418 31 1 -0.3633 0.4343 -0.9314 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.4164 1.7518 -1.9747 35 1 2.0199 3.1733 -1.0895 36 1 3.4222 3.8578 -4.3486 37 1 1.8418 4.7207 2.5002 38 1 2.6024 3.3166 3.3207 39 1 4.3226 4.8761 3.7329 40 1 3.8839 5.8765 2.3172 41 1 6.7061 4.5960 3.0296 42 1 6.9669 3.4032 1.7344 43 1 7.2775 4.1129 -0.5641 44 1 8.0039 5.9147 -2.0772 45 1 8.0589 8.2440 -1.2806 46 1 7.3784 8.7727 1.0261 47 1 6.6431 6.9722 2.5362 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930464554.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:36:16 Heat of formation + Delta-G solvation = -33.850197 kcal Electronic energy + Delta-G solvation = -29702.138378 eV Core-core repulsion = 25850.098752 eV Total energy + Delta-G solvation = -3852.039626 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.49254 -39.12201 -38.22934 -35.87872 -35.10682 -33.48058 -32.54756 -30.89881 -30.76402 -29.94661 -27.52945 -26.79857 -26.03345 -23.22970 -22.92419 -22.44003 -21.65383 -21.11666 -19.42094 -18.04269 -16.98075 -16.73757 -16.54161 -16.06338 -15.65044 -15.46073 -15.18772 -14.79844 -14.41633 -14.21151 -13.83359 -13.48708 -13.31857 -13.23771 -13.02472 -12.80248 -12.71703 -12.42723 -12.22140 -12.11578 -11.97593 -11.83734 -11.56602 -11.38945 -11.35036 -11.11880 -10.85436 -10.82594 -10.76571 -10.51749 -10.34931 -9.93327 -9.61125 -9.15097 -8.99731 -8.78628 -8.63199 -8.34655 -8.31494 -7.66763 -5.96928 -3.95143 1.38925 1.53786 3.03282 3.26733 3.36160 3.42509 3.51535 3.55143 3.97555 4.04649 4.55849 4.71992 4.77000 4.88305 4.98795 5.09744 5.14007 5.20233 5.34598 5.37274 5.40847 5.49911 5.57888 5.61445 5.71585 5.75899 5.80595 5.83891 5.86085 5.91210 6.06196 6.09367 6.18231 6.29129 6.34997 6.44215 6.53766 6.65779 6.66845 6.73609 6.82479 6.88924 7.12326 7.24052 7.49284 7.59793 8.03025 8.23680 8.35374 8.81011 8.93597 9.15719 9.68787 11.11387 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.010693 B = 0.005588 C = 0.004028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2617.947442 B = 5009.314664 C = 6949.553562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.115 3.885 3 N -0.584 5.584 4 C 0.235 3.765 5 C -0.496 4.496 6 H 0.071 0.929 7 C 0.062 3.938 8 N -0.906 5.906 9 Si 0.890 3.110 10 H -0.286 1.286 11 H -0.290 1.290 12 H -0.268 1.268 13 C 0.536 3.464 14 O -0.573 6.573 15 C -0.140 4.140 16 H 0.131 0.869 17 C -0.121 4.121 18 C 0.109 3.891 19 N -0.625 5.625 20 C 0.172 3.828 21 C -0.107 4.107 22 C -0.090 4.090 23 C -0.120 4.120 24 C -0.119 4.119 25 C -0.128 4.128 26 C -0.108 4.108 27 C 0.530 3.470 28 O -0.462 6.462 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.033 0.967 35 H 0.036 0.964 36 H 0.259 0.741 37 H 0.086 0.914 38 H 0.098 0.902 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.127 0.873 44 H 0.120 0.880 45 H 0.118 0.882 46 H 0.118 0.882 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.493 7.217 10.863 13.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.009 4.009 3 N -0.312 5.312 4 C 0.115 3.885 5 C -0.534 4.534 6 H 0.089 0.911 7 C -0.138 4.138 8 N -0.547 5.547 9 Si 0.718 3.282 10 H -0.212 1.212 11 H -0.216 1.216 12 H -0.192 1.192 13 C 0.323 3.677 14 O -0.455 6.455 15 C -0.165 4.165 16 H 0.148 0.852 17 C -0.159 4.159 18 C -0.014 4.014 19 N -0.362 5.362 20 C 0.050 3.950 21 C -0.108 4.108 22 C -0.108 4.108 23 C -0.138 4.138 24 C -0.137 4.137 25 C -0.147 4.147 26 C -0.126 4.126 27 C 0.315 3.685 28 O -0.331 6.331 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.051 0.949 35 H 0.053 0.947 36 H 0.069 0.931 37 H 0.105 0.895 38 H 0.116 0.884 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.101 0.899 42 H 0.106 0.894 43 H 0.145 0.855 44 H 0.138 0.862 45 H 0.136 0.864 46 H 0.136 0.864 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.776 6.598 10.765 13.179 hybrid contribution 0.876 0.281 -0.855 1.256 sum 4.652 6.879 9.910 12.929 Atomic orbital electron populations 1.22101 0.96778 1.01201 1.01934 1.21256 0.93417 0.83687 1.02520 1.48198 1.61432 1.13458 1.08154 1.19529 0.97928 0.91854 0.79159 1.21474 0.98310 1.24626 1.09024 0.91110 1.24792 0.97061 0.95098 0.96840 1.69928 1.35886 1.28199 1.20667 0.86592 0.85566 0.77170 0.78857 1.21211 1.21635 1.19226 1.19588 0.77665 0.86829 0.83659 1.90568 1.56933 1.66572 1.31448 1.22016 0.96322 0.97385 1.00749 0.85175 1.22609 0.96932 0.99574 0.96804 1.21989 0.88225 0.95820 0.95411 1.48238 1.05055 1.43676 1.39271 1.20134 0.79893 0.97182 0.97773 1.20291 0.99822 0.95033 0.95658 1.21266 0.96369 1.00191 0.92986 1.21199 0.99914 0.93028 0.99687 1.21137 1.00108 0.96466 0.95996 1.21055 1.00522 0.98863 0.94210 1.20968 0.99860 0.92259 0.99552 1.20104 0.88658 0.79731 0.79972 1.90904 1.69126 1.39466 1.33643 0.92454 0.92861 0.92520 0.90501 0.91051 0.94928 0.94660 0.93139 0.89528 0.88400 0.90781 0.91642 0.89919 0.89351 0.85476 0.86219 0.86392 0.86371 0.86385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 10.24 37.16 0.38 -2.22 16 2 C 0.11 2.19 6.15 -4.04 -0.02 2.16 16 3 N -0.58 -12.72 2.46 -175.05 -0.43 -13.15 16 4 C 0.23 5.73 4.98 -5.19 -0.03 5.70 16 5 C -0.50 -13.44 6.99 -34.44 -0.24 -13.68 16 6 H 0.07 2.04 6.81 -52.49 -0.36 1.69 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.91 -25.99 13.29 55.43 0.74 -25.26 16 9 Si 0.89 22.35 29.54 -169.99 -5.02 17.33 16 10 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 12 H -0.27 -6.83 7.11 56.52 0.40 -6.42 16 13 C 0.54 11.41 6.77 -10.99 -0.07 11.33 16 14 O -0.57 -12.79 15.15 5.56 0.08 -12.70 16 15 C -0.14 -2.65 2.64 -91.78 -0.24 -2.89 16 16 H 0.13 2.56 6.09 -51.93 -0.32 2.24 16 17 C -0.12 -1.70 6.62 -25.10 -0.17 -1.86 16 18 C 0.11 1.33 7.35 -3.12 -0.02 1.31 16 19 N -0.63 -9.86 2.92 -173.79 -0.51 -10.37 16 20 C 0.17 2.37 6.06 -5.19 -0.03 2.34 16 21 C -0.11 -1.54 5.46 -104.62 -0.57 -2.11 16 22 C -0.09 -1.49 9.70 -39.59 -0.38 -1.87 16 23 C -0.12 -1.82 10.05 -39.59 -0.40 -2.22 16 24 C -0.12 -1.54 10.05 -39.58 -0.40 -1.93 16 25 C -0.13 -1.53 10.05 -39.58 -0.40 -1.92 16 26 C -0.11 -1.32 9.70 -39.58 -0.38 -1.70 16 27 C 0.53 10.72 7.43 -10.86 -0.08 10.64 16 28 O -0.46 -11.20 13.82 5.55 0.08 -11.13 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.08 1.46 8.11 -51.93 -0.42 1.04 16 33 H 0.07 1.37 7.34 -51.93 -0.38 0.99 16 34 H 0.03 0.82 8.08 -51.93 -0.42 0.41 16 35 H 0.04 0.89 5.92 -51.93 -0.31 0.59 16 36 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 37 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.10 1.46 6.90 -51.93 -0.36 1.11 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.08 0.86 8.09 -51.93 -0.42 0.44 16 42 H 0.09 1.32 7.87 -51.93 -0.41 0.91 16 43 H 0.13 2.38 8.06 -52.49 -0.42 1.96 16 44 H 0.12 1.72 8.06 -52.49 -0.42 1.29 16 45 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 46 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 47 H 0.12 1.14 8.06 -52.48 -0.42 0.71 16 LS Contribution 386.83 15.07 5.83 5.83 Total: -1.00 -32.90 386.83 -9.57 -42.47 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -7.18 Total: 4.26 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: -3.16 Total: 2.71 kcal Atomic # 7 Polarization: -48.57 SS G_CDS: -0.20 Total: -48.77 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: 0.16 Total: -23.83 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.90 -9.57 -42.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930464554.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.617 kcal (2) G-P(sol) polarization free energy of solvation -32.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds