Wall clock time and date at job start Sat Apr 11 2020 02:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.20759 * 119.99549 * 2 1 4 4 C 1.50690 * 120.00216 * 179.97438 * 2 1 3 5 5 H 1.08996 * 109.47269 * 44.99813 * 4 2 1 6 6 C 1.53003 * 109.47164 * 285.00028 * 4 2 1 7 7 C 1.50699 * 109.47457 * 174.99954 * 6 4 2 8 8 C 1.38241 * 119.99909 * 89.99672 * 7 6 4 9 9 C 1.38234 * 119.99731 * 179.72430 * 8 7 6 10 10 C 1.38236 * 120.00165 * 0.26745 * 9 8 7 11 11 C 1.38239 * 120.00132 * 359.97438 * 10 9 8 12 12 C 1.38234 * 119.99604 * 0.02562 * 11 10 9 13 13 N 1.46505 * 109.47392 * 165.00471 * 4 2 1 14 14 C 1.34779 * 119.99341 * 274.99928 * 13 4 2 15 15 O 1.21276 * 120.00386 * 359.97438 * 14 13 4 16 16 C 1.50700 * 119.99616 * 179.97438 * 14 13 4 17 17 N 1.46499 * 109.47224 * 179.97438 * 16 14 13 18 18 C 1.36934 * 120.00199 * 270.00365 * 17 16 14 19 19 H 1.07999 * 120.00510 * 192.63216 * 18 17 16 20 20 C 1.38811 * 120.00229 * 12.62951 * 18 17 16 21 21 N 1.31623 * 119.99744 * 25.32620 * 20 18 17 22 22 Si 1.86793 * 120.00416 * 205.32409 * 20 18 17 23 23 H 1.48500 * 109.47176 * 90.00047 * 22 20 18 24 24 H 1.48505 * 109.47382 * 210.00140 * 22 20 18 25 25 H 1.48504 * 109.47255 * 329.99743 * 22 20 18 26 26 C 1.46500 * 119.99785 * 90.00281 * 17 16 14 27 27 C 1.53002 * 117.49751 * 194.08074 * 26 17 16 28 28 C 1.52999 * 59.99997 * 252.50790 * 27 26 17 29 29 H 1.09000 * 109.46475 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47229 * 300.00373 * 1 2 3 31 31 H 1.08993 * 109.46813 * 60.00844 * 1 2 3 32 32 H 1.08997 * 109.47296 * 54.99876 * 6 4 2 33 33 H 1.09003 * 109.47374 * 295.00282 * 6 4 2 34 34 H 1.07998 * 120.00056 * 0.02562 * 8 7 6 35 35 H 1.08004 * 119.99741 * 180.27965 * 9 8 7 36 36 H 1.07997 * 119.99911 * 180.02562 * 10 9 8 37 37 H 1.07991 * 119.99743 * 180.02562 * 11 10 9 38 38 H 1.08003 * 119.99902 * 180.02562 * 12 11 10 39 39 H 0.96996 * 120.00292 * 94.99919 * 13 4 2 40 40 H 1.08998 * 109.47211 * 300.00420 * 16 14 13 41 41 H 1.09007 * 109.46944 * 60.00472 * 16 14 13 42 42 H 0.97000 * 120.00240 * 175.04083 * 21 20 18 43 43 H 1.08996 * 115.54993 * 339.78105 * 26 17 16 44 44 H 1.09003 * 117.49847 * 0.02562 * 27 26 17 45 45 H 1.09003 * 117.49987 * 145.01600 * 27 26 17 46 46 H 1.09001 * 117.49918 * 252.51270 * 28 27 26 47 47 H 1.08997 * 117.51358 * 107.48060 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2606 -1.3050 0.0006 5 1 1.8130 -1.9833 -0.7257 6 6 2.1923 -1.9327 1.3942 7 6 2.8392 -3.2935 1.3646 8 6 4.1906 -3.4221 1.6258 9 6 4.7829 -4.6709 1.6042 10 6 4.0250 -5.7905 1.3160 11 6 2.6747 -5.6613 1.0499 12 6 2.0824 -4.4125 1.0715 13 7 3.6602 -1.0610 -0.3569 14 6 4.0238 -1.0003 -1.6533 15 8 3.1924 -1.1481 -2.5238 16 6 5.4634 -0.7487 -2.0211 17 7 5.5985 -0.7291 -3.4797 18 6 5.8665 -1.8879 -4.1582 19 1 6.1669 -1.8497 -5.1949 20 6 5.7523 -3.1119 -3.5136 21 7 4.9489 -3.2381 -2.4786 22 14 6.7384 -4.5800 -4.1149 23 1 8.0487 -4.6154 -3.4170 24 1 5.9904 -5.8302 -3.8273 25 1 6.9601 -4.4614 -5.5785 26 6 5.4468 0.5304 -4.2125 27 6 5.2688 0.4479 -5.7299 28 6 6.5886 0.9497 -5.1407 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.1500 -2.0326 1.6971 33 1 2.7179 -1.2959 2.1058 34 1 4.7826 -2.5475 1.8515 35 1 5.8378 -4.7719 1.8128 36 1 4.4877 -6.7662 1.2996 37 1 2.0826 -6.5360 0.8252 38 1 1.0273 -4.3115 0.8640 39 1 4.3252 -0.9431 0.3393 40 1 5.7801 0.2113 -1.6135 41 1 6.0875 -1.5420 -1.6095 42 1 4.8138 -4.1088 -2.0728 43 1 4.9115 1.3197 -3.6849 44 1 5.2641 -0.5435 -6.1829 45 1 4.6161 1.1830 -6.2008 46 1 6.8042 2.0149 -5.2239 47 1 7.4528 0.2886 -5.2058 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355963708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:36:31 Heat of formation + Delta-G solvation = 14.136091 kcal Electronic energy + Delta-G solvation = -29488.399583 eV Core-core repulsion = 25638.440799 eV Total energy + Delta-G solvation = -3849.958785 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.86892 -38.73750 -37.90279 -36.60930 -34.69109 -33.24396 -31.82173 -30.67189 -30.55052 -30.32446 -28.18762 -26.34212 -24.25336 -23.41383 -22.35751 -21.36295 -20.92845 -20.05483 -19.52060 -19.10174 -16.78163 -16.48457 -15.91168 -15.82456 -15.62135 -15.47275 -14.85965 -14.73971 -14.48305 -14.27215 -13.87824 -13.79727 -13.17895 -12.99330 -12.86640 -12.77233 -12.60991 -12.25191 -12.16629 -12.08918 -11.86451 -11.62672 -11.23986 -11.13712 -10.91091 -10.79145 -10.76355 -10.63286 -10.43242 -10.25257 -9.94266 -9.73177 -9.57734 -9.31948 -8.62810 -8.49085 -8.44337 -8.23910 -7.93381 -6.72111 -5.77539 -3.03993 1.59738 1.69938 2.24451 3.38748 3.46647 3.47915 3.93563 4.07772 4.18506 4.46745 4.68013 4.93750 4.95330 5.01059 5.17900 5.21120 5.24737 5.25611 5.32276 5.41636 5.46946 5.48052 5.59881 5.63641 5.75003 5.86100 5.92841 6.00922 6.07065 6.13110 6.23096 6.26461 6.28238 6.38413 6.50477 6.60318 6.70528 6.75887 6.77318 6.83825 6.96790 7.10196 7.14689 7.26987 7.39255 7.81779 7.85747 8.29867 8.67883 9.18583 9.76445 9.92664 10.29795 11.30990 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.009420 B = 0.005738 C = 0.003911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2971.598563 B = 4878.266159 C = 7158.015246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.345 3.655 3 O -0.452 6.452 4 C 0.112 3.888 5 H 0.112 0.888 6 C -0.077 4.077 7 C -0.072 4.072 8 C -0.096 4.096 9 C -0.112 4.112 10 C -0.122 4.122 11 C -0.119 4.119 12 C -0.112 4.112 13 N -0.730 5.730 14 C 0.538 3.462 15 O -0.526 6.526 16 C 0.168 3.832 17 N -0.536 5.536 18 C -0.255 4.255 19 H 0.079 0.921 20 C 0.005 3.995 21 N -0.884 5.884 22 Si 0.901 3.099 23 H -0.289 1.289 24 H -0.295 1.295 25 H -0.282 1.282 26 C 0.133 3.867 27 C -0.201 4.201 28 C -0.223 4.223 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.386 0.614 40 H 0.040 0.960 41 H 0.096 0.904 42 H 0.255 0.745 43 H 0.088 0.912 44 H 0.096 0.904 45 H 0.074 0.926 46 H 0.074 0.926 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.624 0.480 11.985 13.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.218 3.782 3 O -0.325 6.325 4 C 0.004 3.996 5 H 0.129 0.871 6 C -0.115 4.115 7 C -0.072 4.072 8 C -0.114 4.114 9 C -0.130 4.130 10 C -0.140 4.140 11 C -0.137 4.137 12 C -0.130 4.130 13 N -0.385 5.385 14 C 0.325 3.675 15 O -0.399 6.399 16 C 0.038 3.962 17 N -0.251 5.251 18 C -0.384 4.384 19 H 0.097 0.903 20 C -0.194 4.194 21 N -0.528 5.528 22 Si 0.732 3.268 23 H -0.216 1.216 24 H -0.221 1.221 25 H -0.208 1.208 26 C 0.023 3.977 27 C -0.240 4.240 28 C -0.264 4.264 29 H 0.099 0.901 30 H 0.105 0.895 31 H 0.108 0.892 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.132 0.868 37 H 0.133 0.867 38 H 0.135 0.865 39 H 0.219 0.781 40 H 0.058 0.942 41 H 0.114 0.886 42 H 0.066 0.934 43 H 0.106 0.894 44 H 0.114 0.886 45 H 0.092 0.908 46 H 0.092 0.908 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.872 0.744 11.430 12.872 hybrid contribution 0.524 -1.152 -0.253 1.291 sum -5.347 -0.407 11.178 12.398 Atomic orbital electron populations 1.22262 0.95107 1.04401 1.04287 1.25351 0.91728 0.91213 0.69931 1.90353 1.72010 1.35008 1.35094 1.21146 0.86468 0.94748 0.97201 0.87082 1.20699 1.01584 0.93733 0.95504 1.19526 0.94069 0.94024 0.99556 1.20873 0.93928 0.97137 0.99422 1.21035 0.99410 0.92771 0.99766 1.21050 0.94252 0.98484 1.00221 1.21008 0.95148 0.97221 1.00331 1.20907 0.99571 0.92358 1.00213 1.46006 1.06285 1.77402 1.08803 1.21834 0.92494 0.72972 0.80193 1.90501 1.53103 1.48081 1.48193 1.20545 0.92271 0.98710 0.84697 1.43470 1.78250 1.02821 1.00577 1.19132 1.39224 0.83518 0.96516 0.90325 1.24739 0.98793 0.97158 0.98664 1.69776 1.34498 1.22982 1.25540 0.86286 0.80097 0.82198 0.78215 1.21632 1.22131 1.20760 1.20884 0.97911 0.90354 0.88586 1.23100 0.99533 1.01985 0.99348 1.23400 0.93826 0.99211 1.09984 0.90140 0.89462 0.89205 0.89720 0.90469 0.86610 0.86543 0.86772 0.86663 0.86547 0.78125 0.94180 0.88594 0.93422 0.89377 0.88558 0.90777 0.90765 0.89370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.23 10.28 36.01 0.37 -1.86 16 2 C 0.34 5.29 6.51 -29.04 -0.19 5.10 16 3 O -0.45 -8.47 17.24 6.00 0.10 -8.36 16 4 C 0.11 1.77 2.21 -69.08 -0.15 1.61 16 5 H 0.11 2.04 7.58 -51.93 -0.39 1.65 16 6 C -0.08 -0.91 4.86 -27.88 -0.14 -1.05 16 7 C -0.07 -0.98 4.95 -104.62 -0.52 -1.49 16 8 C -0.10 -1.34 9.10 -39.58 -0.36 -1.70 16 9 C -0.11 -1.58 10.05 -39.58 -0.40 -1.98 16 10 C -0.12 -1.69 10.05 -39.58 -0.40 -2.09 16 11 C -0.12 -1.62 10.05 -39.58 -0.40 -2.01 16 12 C -0.11 -1.52 9.70 -39.58 -0.38 -1.90 16 13 N -0.73 -13.41 4.07 -54.93 -0.22 -13.64 16 14 C 0.54 12.51 5.75 -10.98 -0.06 12.44 16 15 O -0.53 -14.52 15.51 5.56 0.09 -14.43 16 16 C 0.17 3.91 5.48 -5.19 -0.03 3.88 16 17 N -0.54 -13.52 2.38 -167.02 -0.40 -13.92 16 18 C -0.25 -6.94 8.89 -15.06 -0.13 -7.08 16 19 H 0.08 2.16 6.27 -52.49 -0.33 1.83 16 20 C 0.01 0.15 4.83 -17.43 -0.08 0.06 16 21 N -0.88 -24.10 8.85 55.49 0.49 -23.61 16 22 Si 0.90 21.82 29.63 -169.99 -5.04 16.78 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 25 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 26 C 0.13 2.99 6.60 -67.93 -0.45 2.54 16 27 C -0.20 -4.22 9.77 -26.73 -0.26 -4.48 16 28 C -0.22 -4.39 10.13 -26.73 -0.27 -4.66 16 29 H 0.08 0.72 8.00 -51.93 -0.42 0.31 16 30 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.08 0.77 8.04 -51.93 -0.42 0.36 16 33 H 0.08 0.82 8.09 -51.93 -0.42 0.40 16 34 H 0.12 1.45 7.57 -52.49 -0.40 1.05 16 35 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 36 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 37 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 38 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 39 H 0.39 6.23 7.83 -40.82 -0.32 5.91 16 40 H 0.04 0.83 8.07 -51.93 -0.42 0.41 16 41 H 0.10 2.33 6.61 -51.93 -0.34 1.99 16 42 H 0.26 6.99 8.32 -40.82 -0.34 6.65 16 43 H 0.09 1.92 8.14 -51.93 -0.42 1.49 16 44 H 0.10 2.21 6.44 -51.93 -0.33 1.88 16 45 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 46 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 47 H 0.09 1.82 8.14 -51.93 -0.42 1.39 16 LS Contribution 392.10 15.07 5.91 5.91 Total: -1.00 -33.81 392.10 -10.07 -43.89 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: -7.15 Total: 12.04 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -3.85 Total: -4.66 kcal Atomic # 7 Polarization: -51.03 SS G_CDS: -0.13 Total: -51.16 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: 0.19 Total: -22.79 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.04 Total: 16.78 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.81 -10.07 -43.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355963708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.023 kcal (2) G-P(sol) polarization free energy of solvation -33.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds