Wall clock time and date at job start Sat Apr 11 2020 02:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.20759 * 119.99549 * 2 1 4 4 C 1.50690 * 120.00216 * 179.97438 * 2 1 3 5 5 H 1.08996 * 109.47269 * 44.99813 * 4 2 1 6 6 C 1.53003 * 109.47164 * 285.00028 * 4 2 1 7 7 C 1.50699 * 109.47457 * 174.99954 * 6 4 2 8 8 C 1.38241 * 119.99909 * 89.99672 * 7 6 4 9 9 C 1.38234 * 119.99731 * 179.72430 * 8 7 6 10 10 C 1.38236 * 120.00165 * 0.26745 * 9 8 7 11 11 C 1.38239 * 120.00132 * 359.97438 * 10 9 8 12 12 C 1.38234 * 119.99604 * 0.02562 * 11 10 9 13 13 N 1.46505 * 109.47392 * 165.00471 * 4 2 1 14 14 C 1.34779 * 119.99341 * 274.99928 * 13 4 2 15 15 O 1.21276 * 120.00386 * 359.97438 * 14 13 4 16 16 C 1.50700 * 119.99616 * 179.97438 * 14 13 4 17 17 N 1.46499 * 109.47224 * 179.97438 * 16 14 13 18 18 C 1.36934 * 120.00199 * 270.00365 * 17 16 14 19 19 H 1.07999 * 120.00510 * 192.63216 * 18 17 16 20 20 C 1.38811 * 120.00229 * 12.62951 * 18 17 16 21 21 N 1.31623 * 119.99744 * 25.32620 * 20 18 17 22 22 Si 1.86793 * 120.00416 * 205.32409 * 20 18 17 23 23 H 1.48500 * 109.47176 * 90.00047 * 22 20 18 24 24 H 1.48505 * 109.47382 * 210.00140 * 22 20 18 25 25 H 1.48504 * 109.47255 * 329.99743 * 22 20 18 26 26 C 1.46500 * 119.99785 * 90.00281 * 17 16 14 27 27 C 1.53002 * 117.49751 * 194.08074 * 26 17 16 28 28 C 1.52999 * 59.99997 * 252.50790 * 27 26 17 29 29 H 1.09000 * 109.46475 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47229 * 300.00373 * 1 2 3 31 31 H 1.08993 * 109.46813 * 60.00844 * 1 2 3 32 32 H 1.08997 * 109.47296 * 54.99876 * 6 4 2 33 33 H 1.09003 * 109.47374 * 295.00282 * 6 4 2 34 34 H 1.07998 * 120.00056 * 0.02562 * 8 7 6 35 35 H 1.08004 * 119.99741 * 180.27965 * 9 8 7 36 36 H 1.07997 * 119.99911 * 180.02562 * 10 9 8 37 37 H 1.07991 * 119.99743 * 180.02562 * 11 10 9 38 38 H 1.08003 * 119.99902 * 180.02562 * 12 11 10 39 39 H 0.96996 * 120.00292 * 94.99919 * 13 4 2 40 40 H 1.08998 * 109.47211 * 300.00420 * 16 14 13 41 41 H 1.09007 * 109.46944 * 60.00472 * 16 14 13 42 42 H 0.97000 * 120.00240 * 175.04083 * 21 20 18 43 43 H 1.08996 * 115.54993 * 339.78105 * 26 17 16 44 44 H 1.09003 * 117.49847 * 0.02562 * 27 26 17 45 45 H 1.09003 * 117.49987 * 145.01600 * 27 26 17 46 46 H 1.09001 * 117.49918 * 252.51270 * 28 27 26 47 47 H 1.08997 * 117.51358 * 107.48060 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2606 -1.3050 0.0006 5 1 1.8130 -1.9833 -0.7257 6 6 2.1923 -1.9327 1.3942 7 6 2.8392 -3.2935 1.3646 8 6 4.1906 -3.4221 1.6258 9 6 4.7829 -4.6709 1.6042 10 6 4.0250 -5.7905 1.3160 11 6 2.6747 -5.6613 1.0499 12 6 2.0824 -4.4125 1.0715 13 7 3.6602 -1.0610 -0.3569 14 6 4.0238 -1.0003 -1.6533 15 8 3.1924 -1.1481 -2.5238 16 6 5.4634 -0.7487 -2.0211 17 7 5.5985 -0.7291 -3.4797 18 6 5.8665 -1.8879 -4.1582 19 1 6.1669 -1.8497 -5.1949 20 6 5.7523 -3.1119 -3.5136 21 7 4.9489 -3.2381 -2.4786 22 14 6.7384 -4.5800 -4.1149 23 1 8.0487 -4.6154 -3.4170 24 1 5.9904 -5.8302 -3.8273 25 1 6.9601 -4.4614 -5.5785 26 6 5.4468 0.5304 -4.2125 27 6 5.2688 0.4479 -5.7299 28 6 6.5886 0.9497 -5.1407 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.1500 -2.0326 1.6971 33 1 2.7179 -1.2959 2.1058 34 1 4.7826 -2.5475 1.8515 35 1 5.8378 -4.7719 1.8128 36 1 4.4877 -6.7662 1.2996 37 1 2.0826 -6.5360 0.8252 38 1 1.0273 -4.3115 0.8640 39 1 4.3252 -0.9431 0.3393 40 1 5.7801 0.2113 -1.6135 41 1 6.0875 -1.5420 -1.6095 42 1 4.8138 -4.1088 -2.0728 43 1 4.9115 1.3197 -3.6849 44 1 5.2641 -0.5435 -6.1829 45 1 4.6161 1.1830 -6.2008 46 1 6.8042 2.0149 -5.2239 47 1 7.4528 0.2886 -5.2058 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355963708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:36:30 Heat of formation + Delta-G solvation = -4.891226 kcal Electronic energy + Delta-G solvation = -29489.224670 eV Core-core repulsion = 25638.440799 eV Total energy + Delta-G solvation = -3850.783871 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.17700 -39.83828 -39.59660 -38.32404 -36.06640 -35.13535 -33.23033 -32.34772 -31.70055 -31.53204 -29.45173 -28.03493 -25.81566 -24.91364 -23.41066 -23.00572 -21.98614 -21.79050 -21.22420 -20.44484 -18.44629 -17.78255 -17.56035 -17.37002 -17.11077 -16.87518 -16.09733 -16.01020 -15.81205 -15.75781 -15.60247 -15.17110 -14.73216 -14.44256 -14.20270 -14.05912 -13.88364 -13.61509 -13.54373 -13.24579 -13.09810 -13.00838 -12.81062 -12.71981 -12.43844 -12.34729 -12.24195 -12.10182 -11.93984 -11.84857 -11.76409 -11.67441 -11.02414 -10.94826 -10.39843 -10.19259 -9.69742 -9.57996 -9.36839 -8.63219 -7.81588 -5.08935 0.53547 0.64571 1.04900 1.44327 1.46955 1.53865 2.45013 2.51933 2.66569 2.97032 3.15183 3.33194 3.46816 3.51152 3.91022 4.00151 4.10161 4.22785 4.23439 4.28666 4.32650 4.37479 4.43125 4.48942 4.54217 4.62584 4.68533 4.70006 4.72757 4.87149 4.89820 4.92380 4.95686 5.06126 5.13744 5.19762 5.26070 5.27307 5.30035 5.49051 5.66327 5.72411 5.74098 5.77776 5.93955 6.24986 6.30576 6.61145 7.02136 7.19871 7.84855 8.12106 8.31066 9.22971 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.009420 B = 0.005738 C = 0.003911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2971.598563 B = 4878.266159 C = 7158.015246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.345 3.655 3 O -0.492 6.492 4 C 0.110 3.890 5 H 0.086 0.914 6 C -0.067 4.067 7 C -0.082 4.082 8 C -0.111 4.111 9 C -0.130 4.130 10 C -0.137 4.137 11 C -0.132 4.132 12 C -0.124 4.124 13 N -0.720 5.720 14 C 0.542 3.458 15 O -0.577 6.577 16 C 0.166 3.834 17 N -0.553 5.553 18 C -0.264 4.264 19 H 0.069 0.931 20 C -0.037 4.037 21 N -0.891 5.891 22 Si 0.956 3.044 23 H -0.284 1.284 24 H -0.302 1.302 25 H -0.282 1.282 26 C 0.103 3.897 27 C -0.202 4.202 28 C -0.191 4.191 29 H 0.103 0.897 30 H 0.116 0.884 31 H 0.086 0.914 32 H 0.121 0.879 33 H 0.092 0.908 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.127 0.873 37 H 0.133 0.867 38 H 0.137 0.863 39 H 0.397 0.603 40 H 0.062 0.938 41 H 0.080 0.920 42 H 0.246 0.754 43 H 0.093 0.907 44 H 0.071 0.929 45 H 0.098 0.902 46 H 0.110 0.890 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.345 1.090 12.889 14.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.221 3.779 3 O -0.368 6.368 4 C 0.003 3.997 5 H 0.103 0.897 6 C -0.104 4.104 7 C -0.082 4.082 8 C -0.129 4.129 9 C -0.148 4.148 10 C -0.155 4.155 11 C -0.150 4.150 12 C -0.141 4.141 13 N -0.373 5.373 14 C 0.329 3.671 15 O -0.454 6.454 16 C 0.036 3.964 17 N -0.269 5.269 18 C -0.394 4.394 19 H 0.087 0.913 20 C -0.235 4.235 21 N -0.535 5.535 22 Si 0.786 3.214 23 H -0.211 1.211 24 H -0.229 1.229 25 H -0.208 1.208 26 C -0.006 4.006 27 C -0.241 4.241 28 C -0.232 4.232 29 H 0.122 0.878 30 H 0.134 0.866 31 H 0.105 0.895 32 H 0.139 0.861 33 H 0.111 0.889 34 H 0.142 0.858 35 H 0.142 0.858 36 H 0.145 0.855 37 H 0.151 0.849 38 H 0.155 0.845 39 H 0.232 0.768 40 H 0.080 0.920 41 H 0.098 0.902 42 H 0.056 0.944 43 H 0.111 0.889 44 H 0.089 0.911 45 H 0.116 0.884 46 H 0.128 0.872 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.587 1.369 12.377 14.088 hybrid contribution 0.738 -1.323 -0.531 1.605 sum -5.850 0.047 11.846 13.212 Atomic orbital electron populations 1.22279 0.91240 1.06438 1.05421 1.25778 0.93830 0.90007 0.68259 1.90348 1.73202 1.35961 1.37245 1.21328 0.84456 0.95191 0.98742 0.89651 1.20721 1.03976 0.92580 0.93139 1.19760 0.94052 0.94960 0.99444 1.21123 0.94554 0.97496 0.99722 1.21286 1.00102 0.93187 1.00226 1.21334 0.94734 0.99135 1.00276 1.21336 0.95357 0.98166 1.00149 1.21264 1.00779 0.92339 0.99765 1.45735 1.08160 1.75825 1.07601 1.21665 0.91972 0.72303 0.81138 1.90466 1.54234 1.50723 1.49963 1.20551 0.92414 0.99209 0.84214 1.43573 1.78977 1.03081 1.01280 1.19210 1.39168 0.84647 0.96345 0.91330 1.25312 0.99668 0.99011 0.99476 1.69931 1.35019 1.22477 1.26121 0.85442 0.78896 0.79398 0.77641 1.21054 1.22940 1.20808 1.21140 1.00367 0.89800 0.89272 1.23087 1.01256 1.01532 0.98179 1.23350 0.92325 1.00904 1.06596 0.87781 0.86569 0.89532 0.86126 0.88945 0.85769 0.85765 0.85488 0.84940 0.84506 0.76847 0.91966 0.90153 0.94412 0.88898 0.91093 0.88384 0.87221 0.90478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.78 10.28 71.24 0.73 -3.05 16 2 C 0.34 10.11 6.51 29.10 0.19 10.30 16 3 O -0.49 -18.07 17.24 -1.45 -0.02 -18.10 16 4 C 0.11 3.36 2.21 44.24 0.10 3.45 16 5 H 0.09 3.13 7.58 -2.39 -0.02 3.11 16 6 C -0.07 -1.43 4.86 29.85 0.15 -1.28 16 7 C -0.08 -2.13 4.95 -19.86 -0.10 -2.23 16 8 C -0.11 -3.06 9.10 22.27 0.20 -2.85 16 9 C -0.13 -3.66 10.05 22.27 0.22 -3.44 16 10 C -0.14 -3.75 10.05 22.27 0.22 -3.53 16 11 C -0.13 -3.48 10.05 22.27 0.22 -3.26 16 12 C -0.12 -3.17 9.70 22.27 0.22 -2.96 16 13 N -0.72 -26.40 4.07 -446.10 -1.81 -28.21 16 14 C 0.54 25.56 5.75 87.66 0.50 26.06 16 15 O -0.58 -32.57 15.51 -3.02 -0.05 -32.62 16 16 C 0.17 7.83 5.48 85.63 0.47 8.30 16 17 N -0.55 -28.23 2.38 -682.34 -1.62 -29.85 16 18 C -0.26 -14.64 8.89 84.03 0.75 -13.89 16 19 H 0.07 3.85 6.27 -2.91 -0.02 3.84 16 20 C -0.04 -2.06 4.83 84.86 0.41 -1.65 16 21 N -0.89 -49.53 8.85 21.65 0.19 -49.34 16 22 Si 0.96 45.63 29.63 68.60 2.03 47.67 16 23 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 24 H -0.30 -14.70 7.11 99.48 0.71 -13.99 16 25 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 26 C 0.10 4.60 6.60 44.99 0.30 4.90 16 27 C -0.20 -8.34 9.77 30.59 0.30 -8.04 16 28 C -0.19 -7.19 10.13 30.59 0.31 -6.88 16 29 H 0.10 1.50 8.00 -2.39 -0.02 1.49 16 30 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.12 1.74 8.04 -2.39 -0.02 1.72 16 33 H 0.09 1.73 8.09 -2.39 -0.02 1.71 16 34 H 0.12 3.05 7.57 -2.91 -0.02 3.03 16 35 H 0.12 3.14 8.06 -2.91 -0.02 3.12 16 36 H 0.13 3.00 8.06 -2.91 -0.02 2.97 16 37 H 0.13 2.89 8.06 -2.92 -0.02 2.87 16 38 H 0.14 2.83 8.06 -2.91 -0.02 2.80 16 39 H 0.40 12.71 7.83 -92.71 -0.73 11.98 16 40 H 0.06 2.58 8.07 -2.39 -0.02 2.56 16 41 H 0.08 3.99 6.61 -2.38 -0.02 3.98 16 42 H 0.25 13.76 8.32 -92.71 -0.77 12.99 16 43 H 0.09 4.00 8.14 -2.39 -0.02 3.98 16 44 H 0.07 3.30 6.44 -2.39 -0.02 3.28 16 45 H 0.10 3.53 8.14 -2.39 -0.02 3.51 16 46 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 47 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 Total: -1.00 -75.06 392.10 4.15 -70.91 By element: Atomic # 1 Polarization: 39.35 SS G_CDS: 0.25 Total: 39.60 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: 5.19 Total: -0.06 kcal Atomic # 7 Polarization: -104.16 SS G_CDS: -3.24 Total: -107.40 kcal Atomic # 8 Polarization: -50.64 SS G_CDS: -0.07 Total: -50.71 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.67 kcal Total: -75.06 4.15 -70.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355963708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.014 kcal (2) G-P(sol) polarization free energy of solvation -75.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds